CV885190

Overview
NameCV885190
Unique NameCV885190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_ANADE (Glycogen synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=glgA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.003e-23
Identity = 63/157 (40.13%), Postives = 93/157 (59.24%), Query Frame = -3
Query:  375 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 842
            P  +  +VQ+++LG+G    E+   +    +P++      F+  LAH I AGAD  L+PSRFEPCGL Q++++RYGTVP+V S GGL DTVE+ F GF  G+     E        A+ T  RRAL  +   +A   +++ GMA+D SW+  A ++E
Sbjct:  316 PALLARDVQVVLLGSGDPAYEEAFARAAREHPDRVAARIGFDEGLAHRIEAGADLFLMPSRFEPCGLNQMYSLRYGTVPVVRSVGGLADTVED-FDGFARGTGFRFAEYTP----QALLTATRRALDVFRDRRAWRGLVERGMAEDNSWERSAARYE 467          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_ACIBL (Glycogen synthase OS=Acidobacteria bacterium (strain Ellin345) GN=glgA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.416e-23
Identity = 63/154 (40.91%), Postives = 92/154 (59.74%), Query Frame = -3
Query:  378 KENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKW 830
            +E    +VLG+G K  E  + +L   YP +      ++  LAH I AG+D  L+PSR+EPCGL Q++++RYGTVPIV +TGGL DT+E  +  T    G   V+    D +D      TVR+AL  +  + A  ++M+NGMA+D SW   AK++
Sbjct:  321 REEAIFVVLGSGDKTYEDLMRRLSKQYPNRFAVRVAYDNALAHKIEAGSDMFLMPSRYEPCGLNQIYSLRYGTVPIVRATGGLDDTIENWDPITNRGTGFKFVEYSGEDMLD------TVRKALELFKDKTAWQKLMRNGMARDFSWNTAAKEY 468          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_BACSU (Glycogen synthase OS=Bacillus subtilis GN=glgA PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.462e-23
Identity = 64/171 (37.43%), Postives = 94/171 (54.97%), Query Frame = -3
Query:  339 KENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----EEGF-TGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSE 830
            ++++Q++VLGTG++  E      E  + EK R    F+ PLAH I AG+D  L+PS+FEPCGL QL A++YG +PIV  TGGL DTV     EEG   GF   +F+             +  T+ RAL+ Y  Q +   ++K  M  D SW   AK+++     +  +G +
Sbjct:  321 EQDIQLVVLGTGEREFEDYFRYAEFAFHEKCRAYIGFDEPLAHQIYAGSDMFLMPSKFEPCGLGQLIALQYGAIPIVRETGGLYDTVRAYQEEEGTGNGFTFSAFNAH----------DLKFTIERALSFYCQQDVWKSIVKTAMNADYSWGKSAKEYQRIFEQVTRSGRD 481          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_ANAD2 (Glycogen synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=glgA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.827e-23
Identity = 62/157 (39.49%), Postives = 93/157 (59.24%), Query Frame = -3
Query:  375 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 842
            P  +  +VQ+++LG+G    E+   +    +P++      F+  LAH I AGAD  L+PSRFEPCGL Q++++RYGTVP+V + GGL DTVE+ F GF  G+     E        A+ T  RRAL  +   +A   +++ GMA+D SW+  A ++E
Sbjct:  316 PALLARDVQVVLLGSGDAAYEQAFARAAREHPDRVAARIGFDEGLAHRIEAGADLFLMPSRFEPCGLNQMYSLRYGTVPVVRAVGGLADTVED-FDGFARGTGFRFSEYTP----QALLTATRRALDVFRDRRAWRGLVERGMAEDNSWERSAARYE 467          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA2_NITOC (Glycogen synthase 2 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.827e-23
Identity = 64/165 (38.79%), Postives = 91/165 (55.15%), Query Frame = -3
Query:  378 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV---------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKW 842
            P  + E +Q++ LG G++  +  L+QL   YP +      ++  LAH + AGAD  L+PSRFEPCGL QL+A+RYGTVPI   TGGL DT+         +E  TGF     S           +A+ T ++RALA Y  ++    +   GMAQ+ SW+  AK +
Sbjct:  318 PKLLAEKIQVVFLGEGEERHQNALQQLASRYPNQIGVSISYDERLAHGVQAGADIFLMPSRFEPCGLTQLYALRYGTVPIARRTGGLSDTIVDATEKNLRQELATGFTFTESS----------PSALLTAIQRALACYAQSRQWRRLALTGMAQNFSWQTSAKAY 472          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA2_GEOMG (Glycogen synthase 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.827e-23
Identity = 69/165 (41.82%), Postives = 87/165 (52.73%), Query Frame = -3
Query:  372 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWEE 842
            P F  E +Q+++LGTG   +  QL +      +       F  PLA  I AG D  L+PSRFEPCGL QL A+ YGTVPIV  TGGL DTV        EG  GF    FS D          A    V+RALA Y   +   ++M+ GM +D+SW+  A K+EE
Sbjct:  320 PRFAAEELQLVILGTGDLRLMHQLHEFRNKGVKNVSINLGFKEPLAPKIYAGCDMFLMPSRFEPCGLSQLIALSYGTVPIVRRTGGLADTVIDVTANPREG-NGFSFTEFSAD----------ACWDAVQRALAAYRDREGWRKIMRRGMLRDVSWRSAAGKYEE 473          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPS (Glycogen synthase OS=Rhodopseudomonas palustris (strain BisB5) GN=glgA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.939e-23
Identity = 63/162 (38.89%), Postives = 85/162 (52.47%), Query Frame = -3
Query:  378 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMG-SFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 842
            P  + +  Q+ +LG G  P+E       + YP +   V  ++  LAH I AGAD +L+PSRFEPCGL QL A+RYG VP+VA  GGL DTV +       TG   G  FS       PV    ++  + +  A Y   A    +  NGM  D+SWK PA+ +
Sbjct:  318 PGMLADGAQLALLGAGDAPLEAGFRDAALKYPGQVGAVIGYDEALAHQIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFS-------PVTADMLTAALTKTRALYADHATWRNLQINGMTTDVSWKNPAQHY 472          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_RHOP2 (Glycogen synthase OS=Rhodopseudomonas palustris (strain HaA2) GN=glgA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.939e-23
Identity = 63/162 (38.89%), Postives = 86/162 (53.09%), Query Frame = -3
Query:  378 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMG-SFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 842
            P  + E  Q+ +LG G  P+E+      + YP +   V  ++  LAH I AGAD +L+PSRFEPCGL QL A+RYG VP+VA  GGL DTV +       TG   G  FS       PV    ++  + +  A +   A    +  NGM  D+SWK PA+ +
Sbjct:  318 PGMLAEGAQLALLGAGDTPLEQGFRAAALKYPGQVGAVIGYDEALAHQIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFS-------PVTAQMLAKALTKTAALHADHAAWRNLQINGMTTDVSWKNPAQHY 472          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_FERNB (Glycogen synthase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=glgA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.298e-22
Identity = 62/150 (41.33%), Postives = 90/150 (60.00%), Query Frame = -3
Query:  378 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT-QALAEMMKNGMAQDLSWKGPAKKW 824
            ++Q ++LGTG++  E   ++L   YPEK     KF+I LA  I AG D  L+PSR+EPCGL Q++++RYGT+PIV  TGGL DTV+E     + G+     E  DP   A +   + RA+  Y + +    ++KN M  DLSW   AK++
Sbjct:  327 DIQFVLLGTGEEKYENMFKKLGEKYPEKYSINLKFDIVLAQKIYAGCDMFLMPSRYEPCGLGQMYSLRYGTIPIVRYTGGLADTVKEYNPETKEGN-GFGFEGFDP---AHLLKAMARAIYFYNSKEDWNTLIKNAMTMDLSWDKSAKEY 472          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_ACICJ (Glycogen synthase OS=Acidiphilium cryptum (strain JF-5) GN=glgA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.298e-22
Identity = 63/157 (40.13%), Postives = 83/157 (52.87%), Query Frame = -3
Query:  378 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG---------FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKW 818
            Q+ VLGTG+  +E  L +     P +   +  F   L+H+I  GAD IL+PSRFEPCGL QL A RYG +P+V+  GGLVDTV +           TG Q G          PV  A +S  +RR  A Y      + M +N MA D+SW  PA+ +
Sbjct:  323 QLAVLGTGETGIEASLREAVAARPGRVAAIIGFEESLSHLIQGGADAILVPSRFEPCGLTQLAAQRYGAIPVVSLVGGLVDTVIDANPVAISAGVATGIQFG----------PVSEAGLSDGLRRTAALYADPDKWSRMQRNAMALDVSWTEPARNY 469          
The following BLAST results are available for this feature:
BLAST of CV885190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
GLGA_ANADE2.003e-2340.13Glycogen synthase OS=Anaeromyxobacter dehalogenans... [more]
GLGA_ACIBL3.416e-2340.91Glycogen synthase OS=Acidobacteria bacterium (stra... [more]
GLGA_BACSU4.462e-2337.43Glycogen synthase OS=Bacillus subtilis GN=glgA PE=... [more]
GLGA_ANAD25.827e-2339.49Glycogen synthase OS=Anaeromyxobacter dehalogenans... [more]
GLGA2_NITOC5.827e-2338.79Glycogen synthase 2 OS=Nitrosococcus oceani (strai... [more]
GLGA2_GEOMG5.827e-2341.82Glycogen synthase 2 OS=Geobacter metallireducens (... [more]
GLGA_RHOPS9.939e-2338.89Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_RHOP29.939e-2338.89Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_FERNB1.298e-2241.33Glycogen synthase OS=Fervidobacterium nodosum (str... [more]
GLGA_ACICJ1.298e-2240.13Glycogen synthase OS=Acidiphilium cryptum (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885190 ID=CV885190; Name=CV885190; organism=Citrus sinensis; type=EST; length=844bp
TTTTTTTTTTTTGATCTATAAACTTGTTCAGTTGAACTTTTTCATTTCAG
GAGAGTGGCGACAGCCCTCAGAGCCCTTTTACAAAACTGTAAAACAGAAC
TTAATATTTCATTATACAAGGTAAACACTAATGTCTCAACTCCAAACCAT
TATTGAAAATAGCGCATGCTGCATATACTGCCAACCTATGTTATTTCCTA
AGTAATATCTTGGGTTGTGGAGAATTACAGGAACATGTTTGCGGTCCAAA
ATAAAAGTGGAGATTTTTGTAGCCTCGATCAAGGAGTGGCCACATTTTCC
TTGGCAAGAGGAGCAATTTCTTCGCCGTCAATTCCAGGTTCACTACCAGC
AACTTCCAGGTTAAGTAGGGTCTCCTCCCATTTCTTAGCTGGTCCTTTCC
ATGAAAGATCTTGAGCCATGCCATTTTTCATCATTTCAGCCAAAGCTTGA
GTACCATAGGTTGCAAGAGCTCTTCTGACGGTTGTGGACACTGCAGCCAC
ATCTACTGGATCCACAGCCTCACAGTCAACACTGAAGCTTCCCATCTGGA
ATCCTGTAAAGCCTTCTTCCACAGTGTCAACCAAACCACCAGTGGAAGCC
ACGATAGGTACGGTTCCATAACGCATGGCATGTAATTGAATGAGACCACA
AGGTTCAAATCTGCTTGGAATCAAAATAAAATCAGCTCCTGCTATTATCA
TATGCGCCAGAGGAATATTGAATTTCGCTACTCCTCTGGCTTTCTCAGGG
TACAGTATCTCCAACTGTTCAAGCTGCTTCTCCATTGGTTTTTTGCCCGT
ACCAAGGACTATTATCTGAACATTCTCTTTGATGAAATGGGGAA
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