CV885190

Overview
NameCV885190
Unique NameCV885190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_JANSC (Glycogen synthase OS=Jannaschia sp. (strain CCS1) GN=glgA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.283e-16
Identity = 51/148 (34.46%), Postives = 77/148 (52.03%), Query Frame = -3
Query:  378 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKW 818
            Q+ VLG+G   +E  L +     P  A  +  ++  L+H ++AG D IL+PSRFEPCGL QL+ +RYGT+P+VA TGGL DTV            +   +   P+   A++    R    Y   +    M++N M Q + W   A ++
Sbjct:  317 QVAVLGSGAPDLEVCLLERADAEPNLAVKIG-YDEALSHRMMAGGDCILVPSRFEPCGLTQLYGLRYGTLPLVALTGGLADTVINASPAALARRVATGIQ-FSPITAEALANAFSRLCDLYADRKTWTAMVRNAMKQPVGWDMSASRY 462          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_DEIDV (Glycogen synthase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=glgA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.283e-16
Identity = 57/150 (38.00%), Postives = 76/150 (50.67%), Query Frame = -3
Query:  378 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKW 824
            N  ++VLG G   +   LE        +       N  LAH I AG+D   +PSRFEPCGL Q+ AMRYGT+P+V  TGGLVDTV     GF+            P    A+    ++A A +  Q+  E  +   MA D SW GPA+++
Sbjct:  300 NWNVVVLGGGDPLLTAALEGWA--QHPRVSFAQGMNEALAHQIYAGSDAFAMPSRFEPCGLSQMIAMRYGTLPVVRETGGLVDTVPPD-VGFRF----------QPATPEALVEACQQARAAFEDQSDWEARVARAMALDFSWDGPAREY 436          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_CLOAB (Glycogen synthase OS=Clostridium acetobutylicum GN=glgA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.283e-16
Identity = 54/163 (33.13%), Postives = 82/163 (50.31%), Query Frame = -3
Query:  357 IKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL--AEMMKNGMAQDLSWKGPAKKWEETLLNL 833
            +++ +Q++VLGTG    E   +     YP K     +FN  LA  I   +D  L+PS+FEPCG+ QL A+RYG++PIV  TGGL DTV      TG   G    +  A D + V      +R A   Y  +     ++++  M  D SW   A+ +    +++
Sbjct:  320 LQDGIQLVVLGTGDAKYENMFKYFAWKYPNKLSANIQFNNSLAQKIYGASDMFLMPSKFEPCGIGQLIALRYGSLPIVRETGGLKDTVRPFNPITGEGNGFSFTNYNAHDMLHV------IRNAEYFYYNEKYNWNKLVQTAMNDDNSWSKSAEIYRNLYMSV 476          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_RHOFD (Glycogen synthase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=glgA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.899e-16
Identity = 51/153 (33.33%), Postives = 76/153 (49.67%), Query Frame = -3
Query:  378 IKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKW 833
            ++   Q+ +LG G   +E+      I YP +      ++   AH +IAGAD IL+PS FEPCGL QL+ +RYGT+P+V   GGL DTV +  T   +   S      D +  A + + VRRA   +        + + GM     W   A+ +
Sbjct:  331 VQRGGQLALLGQGDVALERAFVDAAIRYPGQVGVRIGYDEVTAHAVIAGADVILVPSEFEPCGLTQLYGLRYGTLPLVRRVGGLADTVVD-CTLENLDEGSATGFVFDELSPAGLLSAVRRAFVLFRRPDEWLAVQQRGMGLRFDWLASAQHY 482          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA2_SYNJA (Glycogen synthase 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.899e-16
Identity = 54/158 (34.18%), Postives = 80/158 (50.63%), Query Frame = -3
Query:  357 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKW---EETLLNL 818
            Q ++LG+G+   E ++ ++   +P +      +   LA +I  GAD  L+PSRFEPCG+ Q+ AMRYG VPI   TGGLVDTV        +G+        D  +     T + RA   +        + K GMA D SW+  A ++    E ++NL
Sbjct:  315 QFVLLGSGEAYYEGRIREMAERHPGRMAYQQGYQPQLAQLIYGGADVFLMPSRFEPCGISQMIAMRYGCVPIARRTGGLVDTVSHHIPSKGIGT----GYCFDRYEALDFYTCLARAWEAFQHKDTWQALQKRGMATDFSWQRSALEYLRLYELIMNL 468          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA2_METCA (Glycogen synthase 2 OS=Methylococcus capsulatus GN=glgA2 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 9.011e-16
Identity = 47/118 (39.83%), Postives = 68/118 (57.63%), Query Frame = -3
Query:  378 FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKW 722
            +N  LAH++ AG+D +++PSRFEPCGL QL AMRYGT+P+V   GGL DTV ++ F+   +     +       D   + + + RA+A Y        E+MKN M  D SW  P + +
Sbjct:  362 YNEELAHLVYAGSDVMVVPSRFEPCGLTQLIAMRYGTIPVVREIGGLADTVIDKDFSHRPL--HERNGYVFRDYDERGLESALGRAIACYYQYPDHFRELMKNAMRYDYSWNHPGQDY 477          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_CHLCV (Glycogen synthase OS=Chlamydophila caviae GN=glgA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.537e-15
Identity = 43/100 (43.00%), Postives = 60/100 (60.00%), Query Frame = -3
Query:  549 HFIKENVQIIVLGTGKKP-MEKQLEQLE--ILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGF 839
            H ++    ++++GT   P ++++   L+  +      R +  +N PLA ++   AD I IPS FEPCGL QL  MRYGTVP+V STGGL DTV  G  GF
Sbjct:  318 HAMENGYALVIVGTCYDPEIQRKFTNLQESLTTSPNIRIILDYNDPLARLVYGAADMICIPSHFEPCGLTQLIGMRYGTVPLVRSTGGLADTVVTGINGF 417          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_BURTA (Glycogen synthase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=glgA PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.537e-15
Identity = 54/159 (33.96%), Postives = 81/159 (50.94%), Query Frame = -3
Query:  378 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV---------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ--ALAEMMKNGMAQDLSWKGPAKKW 821
            +Q  + G G + +E+  + L   YP +      ++  LAH I AGAD +L  +RFEPCGL QL+AMRYGT+PIV   GGL D+V          E  TGF   + + D          A+S  +RR +  +  +    + + +  MA+D SW   A+ +
Sbjct:  325 MQFALHGRGDRALEQGFDALAAQYPRRVAVRIGYDETLAHRIHAGADILLHGARFEPCGLTQLYAMRYGTIPIVRRVGGLADSVVDLDTLAPHSEDATGFVFDAPTGD----------AMSEALRRCVNLHDARPGVWSALCRLAMARDSSWSRSARAY 473          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_ACHLI (Glycogen synthase OS=Acholeplasma laidlawii (strain PG-8A) GN=glgA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.537e-15
Identity = 44/104 (42.31%), Postives = 61/104 (58.65%), Query Frame = -3
Query:  534 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-------EEGFTGFQMGSF 824
            N + I++G+G K  E     L   YP K      FN  +AH+I   +D  ++PSRFEPCGL Q+ AM+YG++PIV  TGGL D+V       +EG TGF   ++
Sbjct:  320 NAKFILMGSGDKAYEDYFRYLTYKYPNKVGNYIGFNEKIAHIIYGASDIFMMPSRFEPCGLGQMIAMKYGSLPIVRETGGLKDSVIPYNKYTQEG-TGFSFKNY 422          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_YERE8 (Glycogen synthase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=glgA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.007e-15
Identity = 49/150 (32.67%), Postives = 75/150 (50.00%), Query Frame = -3
Query:  396 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWK 842
            P  ++   Q+ VLG G   +++        Y  +      ++   +H IIAGAD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +      +   S      D  D  A+   +RRA   +   +    + ++ M  D  W+
Sbjct:  315 PDLLQLGGQLAVLGAGDAILQEAFLAAAADYSGQVGVQIGYHEAFSHRIIAGADVILVPSRFEPCGLTQLYGLKYGTLPLVRHTGGLADTVVDCALE-NLADGSASGFVFDECDAQALVRAIRRAFVLWSRPKHWRHVQRHAMGLDFGWQ 463          
The following BLAST results are available for this feature:
BLAST of CV885190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
GLGA_JANSC5.283e-1634.46Glycogen synthase OS=Jannaschia sp. (strain CCS1) ... [more]
GLGA_DEIDV5.283e-1638.00Glycogen synthase OS=Deinococcus deserti (strain V... [more]
GLGA_CLOAB5.283e-1633.13Glycogen synthase OS=Clostridium acetobutylicum GN... [more]
GLGA_RHOFD6.899e-1633.33Glycogen synthase OS=Rhodoferax ferrireducens (str... [more]
GLGA2_SYNJA6.899e-1634.18Glycogen synthase 2 OS=Synechococcus sp. (strain J... [more]
GLGA2_METCA9.011e-1639.83Glycogen synthase 2 OS=Methylococcus capsulatus GN... [more]
GLGA_CHLCV1.537e-1543.00Glycogen synthase OS=Chlamydophila caviae GN=glgA ... [more]
GLGA_BURTA1.537e-1533.96Glycogen synthase OS=Burkholderia thailandensis (s... [more]
GLGA_ACHLI1.537e-1542.31Glycogen synthase OS=Acholeplasma laidlawii (strai... [more]
GLGA_YERE82.007e-1532.67Glycogen synthase OS=Yersinia enterocolitica serot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885190 ID=CV885190; Name=CV885190; organism=Citrus sinensis; type=EST; length=844bp
TTTTTTTTTTTTGATCTATAAACTTGTTCAGTTGAACTTTTTCATTTCAG
GAGAGTGGCGACAGCCCTCAGAGCCCTTTTACAAAACTGTAAAACAGAAC
TTAATATTTCATTATACAAGGTAAACACTAATGTCTCAACTCCAAACCAT
TATTGAAAATAGCGCATGCTGCATATACTGCCAACCTATGTTATTTCCTA
AGTAATATCTTGGGTTGTGGAGAATTACAGGAACATGTTTGCGGTCCAAA
ATAAAAGTGGAGATTTTTGTAGCCTCGATCAAGGAGTGGCCACATTTTCC
TTGGCAAGAGGAGCAATTTCTTCGCCGTCAATTCCAGGTTCACTACCAGC
AACTTCCAGGTTAAGTAGGGTCTCCTCCCATTTCTTAGCTGGTCCTTTCC
ATGAAAGATCTTGAGCCATGCCATTTTTCATCATTTCAGCCAAAGCTTGA
GTACCATAGGTTGCAAGAGCTCTTCTGACGGTTGTGGACACTGCAGCCAC
ATCTACTGGATCCACAGCCTCACAGTCAACACTGAAGCTTCCCATCTGGA
ATCCTGTAAAGCCTTCTTCCACAGTGTCAACCAAACCACCAGTGGAAGCC
ACGATAGGTACGGTTCCATAACGCATGGCATGTAATTGAATGAGACCACA
AGGTTCAAATCTGCTTGGAATCAAAATAAAATCAGCTCCTGCTATTATCA
TATGCGCCAGAGGAATATTGAATTTCGCTACTCCTCTGGCTTTCTCAGGG
TACAGTATCTCCAACTGTTCAAGCTGCTTCTCCATTGGTTTTTTGCCCGT
ACCAAGGACTATTATCTGAACATTCTCTTTGATGAAATGGGGAA
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