CV885190

Overview
NameCV885190
Unique NameCV885190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA1_ANAVT (Glycogen synthase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=glgA1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.457e-14
Identity = 42/117 (35.90%), Postives = 64/117 (54.70%), Query Frame = -3
Query:  378 FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKW 722
            FN  L+H+I AGAD I++PS +EPCGL Q+  ++YGTVPIV   GGLV+TV +      +     +       D  A+ + + RA+  +    +   ++   GM  D SW  P K++
Sbjct:  365 FNEELSHLIYAGADMIVVPSNYEPCGLTQMIGLKYGTVPIVRGVGGLVNTVFDRDYDQNLPPEKRNGYVFYQSDNQALESAMNRAIDLWYQSPEKFQQLAIQGMKYDYSWNNPGKEY 481          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_CHLFF (Glycogen synthase OS=Chlamydophila felis (strain Fe/C-56) GN=glgA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.879e-13
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = -3
Query:  549 RGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGF 737
            R +  +N PLA ++   AD + IPS FEPCGL QL  MRYGTVP+  +TGGL DTV  G  GF
Sbjct:  355 RIILDYNEPLARLLYGAADMLCIPSHFEPCGLTQLIGMRYGTVPLARATGGLADTVTPGINGF 417          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_PROVI (Glycogen synthase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=glgA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.454e-13
Identity = 42/150 (28.00%), Postives = 77/150 (51.33%), Query Frame = -3
Query:  378 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKW 824
            ++Q+++ G+G +  EKQ  +    +PE             H+ IAG D +L+P + E CG++Q+ AM YGT+P+  + GG+V+T+++       G    D          A+   +  A+A Y  ++   E++   MA+D  WK  A+++
Sbjct:  336 DIQLVICGSGDQKYEKQFREFADAHPETVSLHTDCPDSFIHLAIAGFDILLMPGKIESCGMLQMFAMSYGTIPVAFAGGGIVETIDDYSEKDGYGFIFHD------YTPKALVARLGAAVALYHDSERWKEIVGRAMARDFGWKHSAEEY 479          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_NATTJ (Glycogen synthase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=glgA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.454e-13
Identity = 58/160 (36.25%), Postives = 80/160 (50.00%), Query Frame = -3
Query:  372 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----EEGF--TGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWEE 827
            E VQ + LGTG    E+ L  L   +   +  + KF+  LA  I A +D  L+PS FEPCG+ Q  A+RYG+VPIV   GGL DTV     EEG    GF   SF+             +  T++ A+  Y  +A   E++ N    D SW+  A ++ E
Sbjct:  328 EEVQFVFLGTGDPHYEQYLSYLAEKHQNLSAQI-KFDEGLARKIYAASDLFLMPSLFEPCGIGQQIAIRYGSVPIVRKVGGLHDTVYPSISEEGTRGIGFTFESFNAH----------EMLFTIKEAIQYYHQKAFWQEIINNLTTIDFSWEKSACEYIE 476          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA2_SYNY3 (Probable glycogen synthase 2 OS=Synechocystis sp. (strain PCC 6803) GN=glgA2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.454e-13
Identity = 47/132 (35.61%), Postives = 64/132 (48.48%), Query Frame = -3
Query:  372 FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-------------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALA--EMMKNGMAQDLSWKGPAKKWEE 722
            F+  LAH+I   AD I++PS +EPCGL Q+  +RYG VP+V   GGLV+TV               GF  +Q              D  A+ T + RA+A Y    +A   +   GMA D SW  P  ++ E
Sbjct:  366 FDEELAHLIYGAADIIVVPSNYEPCGLTQMIGLRYGAVPVVRGVGGLVNTVFDRDYDQNHPPEKRNGFVFYQ-------------PDEYALETALSRAIALYKDDPVAFKTLALQGMAYDYSWNKPGLQYVE 484          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA2_ANASP (Probable glycogen synthase 2 OS=Anabaena sp. (strain PCC 7120) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.205e-13
Identity = 41/117 (35.04%), Postives = 63/117 (53.85%), Query Frame = -3
Query:  378 FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKW 722
            FN  L+H+I AGAD I++PS +EPCGL Q+  ++YGTVPIV   GGLV+TV +      +     +       D  A+ + + RA+  +    +   ++   GM  D SW  P  ++
Sbjct:  365 FNEELSHLIYAGADMIVVPSNYEPCGLTQMIGLKYGTVPIVRGVGGLVNTVFDRDYDQNLPPEKRNGYVFYQSDNQALESAMNRAIDLWYQSPEQFQQLAIQGMKYDYSWNNPGTEY 481          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_CHLPN (Glycogen synthase OS=Chlamydia pneumoniae GN=glgA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.467e-13
Identity = 43/100 (43.00%), Postives = 56/100 (56.00%), Query Frame = -3
Query:  549 HFIKENVQIIVLGTGKKP-MEKQLEQLE--ILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGF 839
            H ++ +   I++GT +   +  +   L+  +      R +  FN PLA +  A AD I IPS  E CGL QL AMRYGTVP+V  TGGL DTV  G  GF
Sbjct:  318 HAMEHSYAFILIGTSQNEVLLNEFRNLQDCLASSPNIRLILDFNDPLARLTYAAADMICIPSHREACGLTQLIAMRYGTVPLVRKTGGLADTVIPGVNGF 417          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_HYDS0 (Glycogen synthase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=glgA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.325e-13
Identity = 45/128 (35.16%), Postives = 66/128 (51.56%), Query Frame = -3
Query:  378 KFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE------MMKNGMAQDLSWKGPAKKW 725
            ++N  L+  + AGAD  L+PS +EPCG+ Q+ AMRYG +PIV  TGGL DTV       E  TGF    ++                T+ RA+  Y  + + E      ++ N MAQD SW+   +++
Sbjct:  352 EYNDILSRKLYAGADMFLMPSEYEPCGIGQMIAMRYGAIPIVHKTGGLADTVVDYNEDNEHGTGFSFEDYT----------YKDFLYTMARAMIVYQKKYIPEDNEWYNIVSNAMAQDFSWRRSVQEY 469          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_AQUAE (Glycogen synthase OS=Aquifex aeolicus GN=glgA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.077e-12
Identity = 41/89 (46.07%), Postives = 54/89 (60.67%), Query Frame = -3
Query:  564 KENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE 830
            K N   + LGTG+   E     +  +Y +  +  A+FN   A  + A +DFIL+PS FEPCGL Q+  MRYG VPIV  TGGL DTV++
Sbjct:  311 KLNANFVFLGTGE--YENAFLDVSKIY-KNFKVFAEFNEGFARKLYASSDFILMPSYFEPCGLTQMIGMRYGCVPIVRKTGGLRDTVKD 396          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_METJA (Probable glycogen synthase OS=Methanocaldococcus jannaschii GN=glgA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.894e-12
Identity = 31/87 (35.63%), Postives = 57/87 (65.52%), Query Frame = -3
Query:  570 KENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 830
            K +++ + L  G + +E++L+ L   +  +   +  +++PL+ ++ AG+D+I++PS +EPCGL+Q+ AM Y T  I   TGGL DT+
Sbjct:  325 KHDIRFVFLTKGDRDIEERLKNLANEHDGRILALIGYSLPLSSLVFAGSDWIIMPSYWEPCGLVQMEAMAYCTPVIATETGGLKDTI 411          
The following BLAST results are available for this feature:
BLAST of CV885190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
GLGA1_ANAVT6.457e-1435.90Glycogen synthase 1 OS=Anabaena variabilis (strain... [more]
GLGA_CHLFF1.879e-1355.56Glycogen synthase OS=Chlamydophila felis (strain F... [more]
GLGA_PROVI2.454e-1328.00Glycogen synthase OS=Prosthecochloris vibrioformis... [more]
GLGA_NATTJ2.454e-1336.25Glycogen synthase OS=Natranaerobius thermophilus (... [more]
GLGA2_SYNY32.454e-1335.61Probable glycogen synthase 2 OS=Synechocystis sp. ... [more]
GLGA2_ANASP3.205e-1335.04Probable glycogen synthase 2 OS=Anabaena sp. (stra... [more]
GLGA_CHLPN5.467e-1343.00Glycogen synthase OS=Chlamydia pneumoniae GN=glgA ... [more]
GLGA_HYDS09.325e-1335.16Glycogen synthase OS=Hydrogenobaculum sp. (strain ... [more]
GLGA_AQUAE2.077e-1246.07Glycogen synthase OS=Aquifex aeolicus GN=glgA PE=3... [more]
GLGA_METJA7.894e-1235.63Probable glycogen synthase OS=Methanocaldococcus j... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885190 ID=CV885190; Name=CV885190; organism=Citrus sinensis; type=EST; length=844bp
TTTTTTTTTTTTGATCTATAAACTTGTTCAGTTGAACTTTTTCATTTCAG
GAGAGTGGCGACAGCCCTCAGAGCCCTTTTACAAAACTGTAAAACAGAAC
TTAATATTTCATTATACAAGGTAAACACTAATGTCTCAACTCCAAACCAT
TATTGAAAATAGCGCATGCTGCATATACTGCCAACCTATGTTATTTCCTA
AGTAATATCTTGGGTTGTGGAGAATTACAGGAACATGTTTGCGGTCCAAA
ATAAAAGTGGAGATTTTTGTAGCCTCGATCAAGGAGTGGCCACATTTTCC
TTGGCAAGAGGAGCAATTTCTTCGCCGTCAATTCCAGGTTCACTACCAGC
AACTTCCAGGTTAAGTAGGGTCTCCTCCCATTTCTTAGCTGGTCCTTTCC
ATGAAAGATCTTGAGCCATGCCATTTTTCATCATTTCAGCCAAAGCTTGA
GTACCATAGGTTGCAAGAGCTCTTCTGACGGTTGTGGACACTGCAGCCAC
ATCTACTGGATCCACAGCCTCACAGTCAACACTGAAGCTTCCCATCTGGA
ATCCTGTAAAGCCTTCTTCCACAGTGTCAACCAAACCACCAGTGGAAGCC
ACGATAGGTACGGTTCCATAACGCATGGCATGTAATTGAATGAGACCACA
AGGTTCAAATCTGCTTGGAATCAAAATAAAATCAGCTCCTGCTATTATCA
TATGCGCCAGAGGAATATTGAATTTCGCTACTCCTCTGGCTTTCTCAGGG
TACAGTATCTCCAACTGTTCAAGCTGCTTCTCCATTGGTTTTTTGCCCGT
ACCAAGGACTATTATCTGAACATTCTCTTTGATGAAATGGGGAA
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