CV885190

Overview
NameCV885190
Unique NameCV885190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_BACST (Glycogen synthase OS=Bacillus stearothermophilus GN=glgA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.695e-22
Identity = 65/162 (40.12%), Postives = 91/162 (56.17%), Query Frame = -3
Query:  372 IKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE-------EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMM-KNGMAQDLSWKGPAKKWEE 833
            + E++Q++VLGTG    E+   Q+   YP K      F+ PLAH I AGAD  LIPS FEPCGL Q+ A+RYGT+PIV  TGGL DTV+       EG  GF   +F+             +  T+RRAL+ Y   ++ E + +  M  D SW+  A ++++
Sbjct:  319 MSEDMQLVVLGTGDWRFEQFFSQMAAAYPGKVGVYIGFHEPLAHQIYAGADLFLIPSLFEPCGLSQMIALRYGTIPIVRETGGLNDTVQSYNEITKEG-NGFSFTNFNAH----------DMLYTIRRALSFYRQPSVWEQLTERAMRGDYSWRRSANQYKQ 469          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_SYNS3 (Glycogen synthase OS=Synechococcus sp. (strain CC9311) GN=glgA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.214e-22
Identity = 70/188 (37.23%), Postives = 99/188 (52.66%), Query Frame = -3
Query:  282 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 824
            + QI+VLGTG + +E  L Q+   +P +      ++  L+ +I AG+D  L+PSRFEPCG+ QL AMRYG VP+V   GGLVDTV      ++  TGF    F       DPVD    +  VR   A     +  E+ + GM QD SW   A ++++  +  EV G  EPG D   +   ++   A P
Sbjct:  302 DTQIVVLGTGDRGLESGLWQMASRHPGRVSVFLTYDDDLSRLIYAGSDAFLMPSRFEPCGISQLLAMRYGCVPVVRKVGGLVDTVPPHDPAQQSGTGFCFDRF-------DPVDF--FTALVRSWEAFRHQDSWRELQRRGMRQDYSWARSAMEYDQ--MYREVCGLKEPGPDAAAVEQFSQGQDADP 478          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_RHORT (Glycogen synthase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glgA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.214e-22
Identity = 67/173 (38.73%), Postives = 91/173 (52.60%), Query Frame = -3
Query:  327 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA-LAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGID 842
            P  I    Q+ +LG G   +E  L  +   YP  A     ++  LAH+I   ADF+L+PSRFEPCGL QL+A+RYGT+P+V  TGGL D+V     G        D    D     A+   + RA+  Y  +A L ++ + GM+QD SWK  AK++      L V GS  G D
Sbjct:  320 PGMIAGGAQVAILGAGDTGLEAALNDIVGRYPGAAAVHVGYDEHLAHLIEGAADFLLVPSRFEPCGLTQLYALRYGTIPVVRRTGGLADSVSHLDDGPNGTGIVFDHALPD-----ALEWAIGRAMTLYRDKATLNKVRQRGMSQDFSWKRSAKEY------LRVYGSMVGGD 481          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_LACLA (Glycogen synthase OS=Lactococcus lactis subsp. lactis GN=glgA PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.214e-22
Identity = 69/163 (42.33%), Postives = 93/163 (57.06%), Query Frame = -3
Query:  372 IKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG--TQALAEMMKNGMAQDLSWKGPAKKWEE 833
            ++ENVQI++LGTG   +E+        YP+K      F+I  A  I AG+DF L+PS FEPCGL Q+ AMRYGT+PIV   GGL DTV       +EG TGF      VD E    V+      T+ RAL  YG   + L +M+ + M++D SW   A+++ E
Sbjct:  322 LEENVQIVLLGTGFPEIEEGFRYFSQKYPDKLSANIAFDIQFAQEIYAGSDFFLMPSAFEPCGLSQMIAMRYGTLPIVHEIGGLKDTVIPFNPISKEG-TGFGF----VDFEGQILVE------TINRALEVYGKEPEVLNKMVLSAMSKDFSWGTKAQQYIE 473          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_ELUMP (Glycogen synthase OS=Elusimicrobium minutum (strain Pei191) GN=glgA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.214e-22
Identity = 62/156 (39.74%), Postives = 90/156 (57.69%), Query Frame = -3
Query:  372 KENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWEE 830
            K+ VQ +V+GTG   MEK    L      K   VAK +  LAH + AG+D  L+PSRFEPCGL Q+ +MRYGTVPIV+  GGL+DTV+  +G T +  G F ++           +  ++  AL  Y   +    ++KNGM +D SW   A+++++
Sbjct:  325 KDKVQFVVVGTGDSGMEKAFMALAKNNVGKVAYVAKVDEELAHRVYAGSDIFLMPSRFEPCGLSQMISMRYGTVPIVSRVGGLLDTVKGYDGITKYATGFFILE------FSETGIERSLDYALKYYQDKRCWGMLIKNGMEKDFSWTKSAQEYQD 474          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_DESAP (Glycogen synthase OS=Desulforudis audaxviator (strain MP104C) GN=glgA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.892e-22
Identity = 60/168 (35.71%), Postives = 92/168 (54.76%), Query Frame = -3
Query:  330 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKWEETLLN-LEVAGSEPGI 824
            ++Q+++LG G K  E    ++++ +P K      FN+ LA  I AG+D  L+PSRFEPCGL QL ++RYGT+PIV  TGGL DTV E    + + +   +       D  A+ + + RAL  Y    +A   +++N M  D SW   A ++ +   + +E    E GI
Sbjct:  334 DIQMVILGKGDKYYEDMFREMKVQHPGKIAAHIGFNVVLAQRIYAGSDMFLMPSRFEPCGLGQLISLRYGTIPIVRETGGLADTVNE----YDLATGGGNGFVFKEYDARALYSAIARALKLYREDQEAWGRLVRNAMEMDFSWARSAVEYLQVYRDAMEKVSEERGI 497          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_THESQ (Glycogen synthase OS=Thermotoga sp. (strain RQ2) GN=glgA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.777e-22
Identity = 61/151 (40.40%), Postives = 84/151 (55.63%), Query Frame = -3
Query:  378 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA--LAEMMKNGMAQDLSWKGPAKKW 824
            ++QI+VLGTG +  E    + +  YP+K     KF++ LA  I AGAD  L+PSR+EPCGL Q+ +MRYGT+P+V  TGGL DTV+E    +   S           D A +   V +AL  Y  +      +M N M  DLSW   AK++
Sbjct:  327 DLQIVVLGTGDEQYENAFRKFQERYPDKVSANIKFDVELAQKIYAGADIFLMPSRYEPCGLGQMFSMRYGTIPVVRYTGGLADTVKE----YDPQSMEGTGFGFKKYDSAHLLKAVSKALHFYYREKDHWRRIMTNAMNTDLSWDRSAKEY 473          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_THEP1 (Glycogen synthase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=glgA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.777e-22
Identity = 61/151 (40.40%), Postives = 84/151 (55.63%), Query Frame = -3
Query:  378 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA--LAEMMKNGMAQDLSWKGPAKKW 824
            ++QI+VLGTG +  E    + +  YP+K     KF++ LA  I AGAD  L+PSR+EPCGL Q+ +MRYGT+P+V  TGGL DTV+E    +   S           D A +   V +AL  Y  +      +M N M  DLSW   AK++
Sbjct:  327 DLQIVVLGTGDEQYENAFRKFQERYPDKVSANIKFDVELAQKIYAGADIFLMPSRYEPCGLGQMFSMRYGTIPVVRYTGGLADTVKE----YDPQSMEGTGFGFKKYDSAHLLKAVSKALHFYYREKDHWRRIMTNAMNTDLSWDRSAKEY 473          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_THEMA (Glycogen synthase OS=Thermotoga maritima GN=glgA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.777e-22
Identity = 61/151 (40.40%), Postives = 84/151 (55.63%), Query Frame = -3
Query:  378 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA--LAEMMKNGMAQDLSWKGPAKKW 824
            ++QI+VLGTG +  E    + +  YP+K     KF++ LA  I AGAD  L+PSR+EPCGL Q+ +MRYGT+P+V  TGGL DTV+E    +   S           D A +   V +AL  Y  +      +M N M  DLSW   AK++
Sbjct:  327 DLQIVVLGTGDEQYENAFRKFQERYPDKVSANIKFDVELAQKIYAGADIFLMPSRYEPCGLGQMFSMRYGTIPVVRYTGGLADTVKE----YDPQSMEGTGFGFKKYDSAHLLKAVSKALHFYYREKDHWRRIMTNAMNTDLSWDRSAKEY 473          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_GEOTN (Glycogen synthase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=glgA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.777e-22
Identity = 64/162 (39.51%), Postives = 91/162 (56.17%), Query Frame = -3
Query:  372 IKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE-------EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMM-KNGMAQDLSWKGPAKKWEE 833
            + E++Q++VLGTG    E+   Q+   YP K      F+ PLAH I AGAD  L+PS FEPCGL Q+ A+RYGT+PIV  TGGL DTV+       EG  GF   +F+             +  T+RRAL+ Y   ++ E + +  M  D SW+  A ++++
Sbjct:  319 MSEDMQLVVLGTGDWRFEQFFSQMAAAYPGKVGVYIGFHEPLAHQIYAGADLFLMPSLFEPCGLSQMIALRYGTIPIVRETGGLNDTVQSYNEITKEG-NGFSFTNFNAH----------DMLYTIRRALSFYRQPSVWEQLTERAMRGDYSWRRSANQYKQ 469          
The following BLAST results are available for this feature:
BLAST of CV885190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
GLGA_BACST1.695e-2240.12Glycogen synthase OS=Bacillus stearothermophilus G... [more]
GLGA_SYNS32.214e-2237.23Glycogen synthase OS=Synechococcus sp. (strain CC9... [more]
GLGA_RHORT2.214e-2238.73Glycogen synthase OS=Rhodospirillum rubrum (strain... [more]
GLGA_LACLA2.214e-2242.33Glycogen synthase OS=Lactococcus lactis subsp. lac... [more]
GLGA_ELUMP2.214e-2239.74Glycogen synthase OS=Elusimicrobium minutum (strai... [more]
GLGA_DESAP2.892e-2235.71Glycogen synthase OS=Desulforudis audaxviator (str... [more]
GLGA_THESQ3.777e-2240.40Glycogen synthase OS=Thermotoga sp. (strain RQ2) G... [more]
GLGA_THEP13.777e-2240.40Glycogen synthase OS=Thermotoga petrophila (strain... [more]
GLGA_THEMA3.777e-2240.40Glycogen synthase OS=Thermotoga maritima GN=glgA P... [more]
GLGA_GEOTN3.777e-2239.51Glycogen synthase OS=Geobacillus thermodenitrifica... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885190 ID=CV885190; Name=CV885190; organism=Citrus sinensis; type=EST; length=844bp
TTTTTTTTTTTTGATCTATAAACTTGTTCAGTTGAACTTTTTCATTTCAG
GAGAGTGGCGACAGCCCTCAGAGCCCTTTTACAAAACTGTAAAACAGAAC
TTAATATTTCATTATACAAGGTAAACACTAATGTCTCAACTCCAAACCAT
TATTGAAAATAGCGCATGCTGCATATACTGCCAACCTATGTTATTTCCTA
AGTAATATCTTGGGTTGTGGAGAATTACAGGAACATGTTTGCGGTCCAAA
ATAAAAGTGGAGATTTTTGTAGCCTCGATCAAGGAGTGGCCACATTTTCC
TTGGCAAGAGGAGCAATTTCTTCGCCGTCAATTCCAGGTTCACTACCAGC
AACTTCCAGGTTAAGTAGGGTCTCCTCCCATTTCTTAGCTGGTCCTTTCC
ATGAAAGATCTTGAGCCATGCCATTTTTCATCATTTCAGCCAAAGCTTGA
GTACCATAGGTTGCAAGAGCTCTTCTGACGGTTGTGGACACTGCAGCCAC
ATCTACTGGATCCACAGCCTCACAGTCAACACTGAAGCTTCCCATCTGGA
ATCCTGTAAAGCCTTCTTCCACAGTGTCAACCAAACCACCAGTGGAAGCC
ACGATAGGTACGGTTCCATAACGCATGGCATGTAATTGAATGAGACCACA
AGGTTCAAATCTGCTTGGAATCAAAATAAAATCAGCTCCTGCTATTATCA
TATGCGCCAGAGGAATATTGAATTTCGCTACTCCTCTGGCTTTCTCAGGG
TACAGTATCTCCAACTGTTCAAGCTGCTTCTCCATTGGTTTTTTGCCCGT
ACCAAGGACTATTATCTGAACATTCTCTTTGATGAAATGGGGAA
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