CV885190

Overview
NameCV885190
Unique NameCV885190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_BACC1 (Glycogen synthase OS=Bacillus cereus (strain ATCC 10987) GN=glgA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.777e-22
Identity = 66/162 (40.74%), Postives = 92/162 (56.79%), Query Frame = -3
Query:  357 IKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNL 833
            ++E+VQ I+LG+G    EK  E +   YPEK +    FN  LAH + AG+D  L+PS FEPCGL QL A+ YGT+PIV  TGGL DTV+  +  TG   G    +  A D +       TVRRA+  Y  + + E ++K  M +D SW   A  +++   +L
Sbjct:  319 MEEDVQCIILGSGDSEYEKFFEWMAYEYPEKVKVYIGFNEELAHQVYAGSDLFLMPSLFEPCGLGQLIALAYGTIPIVRETGGLNDTVQSYDEETGEGNGFSFTNFNAHDMLH------TVRRAIEFYHDKPVWEQLVKQAMTEDYSWGKSALAYKKLYKSL 474          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_THICR (Glycogen synthase OS=Thiomicrospira crunogena (strain XCL-2) GN=glgA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.933e-22
Identity = 66/162 (40.74%), Postives = 90/162 (55.56%), Query Frame = -3
Query:  378 PHFIKE-NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 842
            P  I++ NV+ +++GTG    E QL +L   YPE+      ++  LAH + AGAD  L+PSRFEPCGL QL+++ YGT PIV STGGL DTV     E   TG   G    D          A+ +T+  AL  +  +    ++ KNGM QD SW   AK++
Sbjct:  328 PELIEQTNVRFVIVGTGDSLFEYQLTELAHQYPERLMIYIGYSESLAHKVEAGADLFLMPSRFEPCGLNQLYSLAYGTPPIVHSTGGLSDTVVNATKENLATGQATGFVFYDPSR------HALKSTILHALHLFSKKGTWQKLQKNGMRQDFSWTRSAKQY 483          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_BACCQ (Glycogen synthase OS=Bacillus cereus (strain Q1) GN=glgA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.933e-22
Identity = 65/162 (40.12%), Postives = 93/162 (57.41%), Query Frame = -3
Query:  357 IKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNL 833
            ++E+VQ I+LG+G    E+  E +   YPEK +    FN  LAH + AG+D  L+PS FEPCGL QL A+ YGT+PIV  TGGL DTV+  +  TG   G    +  A D +       TVRRA+  Y  + + E ++K  M +D SW+  A  +++   +L
Sbjct:  319 MEEDVQCIILGSGDSEYEQFFEWMAYEYPEKVKVYIGFNEELAHQVYAGSDLFLMPSLFEPCGLGQLIALAYGTIPIVRETGGLNDTVQSYDEETGEGNGFSFTNFNAHDMLH------TVRRAIEFYHDKPVWEQLVKQAMTEDYSWEKSALAYKKLYKSL 474          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_ANASK (Glycogen synthase OS=Anaeromyxobacter sp. (strain K) GN=glgA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.442e-22
Identity = 59/162 (36.42%), Postives = 93/162 (57.41%), Query Frame = -3
Query:  375 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE-----GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 842
            P  +  +VQ+++LG+G    ++   +    +P++      F+  LAH I AGAD  L+PSRFEPCGL Q++++RYGTVP+V + GGL DTVE+       TGF+   ++            A+ T  RRAL  +   +A   +++ GMA+D SW+  A ++E
Sbjct:  316 PALLARDVQVVLLGSGDPAYQETFARAAREHPDRVAARIGFDEGLAHRIEAGADLFLMPSRFEPCGLNQMYSLRYGTVPVVRAVGGLADTVEDFDGVARGTGFRFSEYTPQ----------ALLTATRRALDVFRDRRAWRGLVERGMAEDNSWERSAARYE 467          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_XANC5 (Glycogen synthase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=glgA PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.099e-21
Identity = 58/156 (37.18%), Postives = 85/156 (54.49%), Query Frame = -3
Query:  378 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKN-GMAQDLSWKGPAKKW 842
            P  +    QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+          A+   + RA  T+   +L   M+   M +   W    KK+
Sbjct:  346 PQIVAAGGQIAVIGGGEPEIERQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE----------ALRRCLERAFRTFRLPSLLSAMRRAAMLRPSGWDVAGKKY 491          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_THELT (Glycogen synthase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=glgA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.099e-21
Identity = 58/151 (38.41%), Postives = 89/151 (58.94%), Query Frame = -3
Query:  378 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA--LAEMMKNGMAQDLSWKGPAKKW 824
            ++Q +VLGTG K  E+  + +E  YP+K     KF++ LA  I A +D  L+PSR+EPCGL Q++++RYGTVPIV  TGGL D+V+E    +   +   +       D A +  TV +A+  Y  +     +++KN M  D+SW   AK++
Sbjct:  327 DIQFVVLGTGDKKYEEFFKNIEKKYPQKISSNMKFDVDLAQKIYAASDMFLMPSRYEPCGLGQMYSLRYGTVPIVRYTGGLADSVKE----YDPKTRDGNGFGFREYDTAHLLETVAKAVYFYKKEKDHWGKVVKNAMKTDVSWDRSAKQY 473          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_SYNSC (Glycogen synthase OS=Synechococcus sp. (strain CC9605) GN=glgA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.099e-21
Identity = 69/183 (37.70%), Postives = 96/183 (52.46%), Query Frame = -3
Query:  282 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGS-FSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 824
            + QI+VLGTG + +E  L QL   +P K      ++  L+ +I  G+D  L+PSRFEPCG+ QL+AMRYG+VP+V   GGLVDTV         G+ F  D    +PVD    +  VR   A     +  E+ K GM QD SW   A  ++  L+  +V G  EP  D   +   ++   A P
Sbjct:  302 DTQIVVLGTGDRGLESGLWQLASRHPGKCAVFLTYDDDLSRLIYGGSDAFLMPSRFEPCGISQLYAMRYGSVPVVRKVGGLVDTVPPHIPAADSGTGFCFD--RFEPVDF--YTALVRAWEAFRHRDSWTELQKRGMNQDYSWDRSAVDYD--LMYKDVCGIKEPTPDAALVEQFSQGQAADP 478          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_SYNS9 (Glycogen synthase OS=Synechococcus sp. (strain CC9902) GN=glgA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.099e-21
Identity = 69/181 (38.12%), Postives = 98/181 (54.14%), Query Frame = -3
Query:  282 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGS-FSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 818
            QI+VLGTG + +E  L QL   YP K      ++  L+ +I AG+D  L+PSRFEPCG+ QL+AMRYG+VP+V + GGLVDTV         G+ F  D    +PVD    +  VR   A     +  ++ K GM +D SW   A +++  L+  +V G  EP  D   +   ++   A P
Sbjct:  304 QIVVLGTGDRGLESGLWQLASRYPGKCAVFLTYDDDLSRLIYAGSDAFLMPSRFEPCGISQLYAMRYGSVPVVRNVGGLVDTVPPHDPNADRGTGFCFD--RFEPVDF--YTALVRAWEAYRHRSSWQDLQKRGMTEDYSWDRSAVEYD--LMYKDVCGIKEPTPDAALLEQFSRGQDADP 478          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPB (Glycogen synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=glgA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.099e-21
Identity = 58/166 (34.94%), Postives = 92/166 (55.42%), Query Frame = -3
Query:  348 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMK-NGMAQDLSWKGPAKKWEETLLNLEVA 842
            P  + E +Q+ +LG G   +E++ +     YP +   +  ++  LAH+I AGAD +L+PSRFEPCGL QL A+RYG VP+VA  GGL DTV +      + +         PV    ++  + +  A Y  +A  + ++ NGM  D+SW+ PA+ + +   +L  A
Sbjct:  318 PVLLAEGIQLALLGAGDPELEERFKSAAQAYPGQIGVMIGYDEDLAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLSDTVVDA-NEMAIAAGVATGVQFSPVTGDMLAAALSKTRALYADRAAWQALQHNGMTADVSWRNPAQHYAQLYRSLLAA 482          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_FLAJ1 (Glycogen synthase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=glgA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.099e-21
Identity = 62/159 (38.99%), Postives = 90/159 (56.60%), Query Frame = -3
Query:  372 HFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAV--DPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKWEE 839
            HF  E + I++LG+G   +E QL QL   Y         +N  LAH+I AG+D+IL+PSR EPCGL Q++AMRYGT+PIV  TGGL DTV +         F  D   +  D   V  +  ++ RA+  Y  + +   +++ GMA D SW+   +++ E
Sbjct:  317 HF--EEINILILGSGNAEIESQLTQLRNDYKGNYNVFIGYNEELAHLIYAGSDYILMPSRVEPCGLNQMYAMRYGTIPIVRRTGGLRDTVID---------FGDDGNGICHDQASVGDICYSINRAVKLYDDKISFNTVLRRGMAADHSWERVCQEYIE 464          
The following BLAST results are available for this feature:
BLAST of CV885190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
GLGA_BACC13.777e-2240.74Glycogen synthase OS=Bacillus cereus (strain ATCC ... [more]
GLGA_THICR4.933e-2240.74Glycogen synthase OS=Thiomicrospira crunogena (str... [more]
GLGA_BACCQ4.933e-2240.12Glycogen synthase OS=Bacillus cereus (strain Q1) G... [more]
GLGA_ANASK6.442e-2236.42Glycogen synthase OS=Anaeromyxobacter sp. (strain ... [more]
GLGA_XANC51.099e-2137.18Glycogen synthase OS=Xanthomonas campestris pv. ve... [more]
GLGA_THELT1.099e-2138.41Glycogen synthase OS=Thermotoga lettingae (strain ... [more]
GLGA_SYNSC1.099e-2137.70Glycogen synthase OS=Synechococcus sp. (strain CC9... [more]
GLGA_SYNS91.099e-2138.12Glycogen synthase OS=Synechococcus sp. (strain CC9... [more]
GLGA_RHOPB1.099e-2134.94Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_FLAJ11.099e-2138.99Glycogen synthase OS=Flavobacterium johnsoniae (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885190 ID=CV885190; Name=CV885190; organism=Citrus sinensis; type=EST; length=844bp
TTTTTTTTTTTTGATCTATAAACTTGTTCAGTTGAACTTTTTCATTTCAG
GAGAGTGGCGACAGCCCTCAGAGCCCTTTTACAAAACTGTAAAACAGAAC
TTAATATTTCATTATACAAGGTAAACACTAATGTCTCAACTCCAAACCAT
TATTGAAAATAGCGCATGCTGCATATACTGCCAACCTATGTTATTTCCTA
AGTAATATCTTGGGTTGTGGAGAATTACAGGAACATGTTTGCGGTCCAAA
ATAAAAGTGGAGATTTTTGTAGCCTCGATCAAGGAGTGGCCACATTTTCC
TTGGCAAGAGGAGCAATTTCTTCGCCGTCAATTCCAGGTTCACTACCAGC
AACTTCCAGGTTAAGTAGGGTCTCCTCCCATTTCTTAGCTGGTCCTTTCC
ATGAAAGATCTTGAGCCATGCCATTTTTCATCATTTCAGCCAAAGCTTGA
GTACCATAGGTTGCAAGAGCTCTTCTGACGGTTGTGGACACTGCAGCCAC
ATCTACTGGATCCACAGCCTCACAGTCAACACTGAAGCTTCCCATCTGGA
ATCCTGTAAAGCCTTCTTCCACAGTGTCAACCAAACCACCAGTGGAAGCC
ACGATAGGTACGGTTCCATAACGCATGGCATGTAATTGAATGAGACCACA
AGGTTCAAATCTGCTTGGAATCAAAATAAAATCAGCTCCTGCTATTATCA
TATGCGCCAGAGGAATATTGAATTTCGCTACTCCTCTGGCTTTCTCAGGG
TACAGTATCTCCAACTGTTCAAGCTGCTTCTCCATTGGTTTTTTGCCCGT
ACCAAGGACTATTATCTGAACATTCTCTTTGATGAAATGGGGAA
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