CV885190

Overview
NameCV885190
Unique NameCV885190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8139 contig Csv1_Contig8139:752..1595. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_XANAC (Glycogen synthase OS=Xanthomonas axonopodis pv. citri GN=glgA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.435e-21
Identity = 58/156 (37.18%), Postives = 85/156 (54.49%), Query Frame = -3
Query:  378 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKN-GMAQDLSWKGPAKKW 842
            P  +    QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+          A+   + RA  T+   +L   M+   M +   W    KK+
Sbjct:  311 PQIVAAGGQIAVIGGGEPEIEQQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE----------ALRRCLERAFRTFRLPSLLSAMRRAAMLRPSGWDVAGKKY 456          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_THISH (Glycogen synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=glgA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.435e-21
Identity = 58/148 (39.19%), Postives = 85/148 (57.43%), Query Frame = -3
Query:  378 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 818
            Q++V+G+G   +E+    L   YPE       ++ PLAH + AGAD  ++PSRFEPCGL Q++++RYGTVP+V +TGGL DTV +          +   +  D     A++  + RALA Y   A    +M+ GMAQD SW   A+ +
Sbjct:  328 QLVVVGSGDATLEQTARSLAERYPEHMGLHIGYSEPLAHQLEAGADIFVMPSRFEPCGLNQMYSLRYGTVPVVRNTGGLADTVVDADPAHLAARDATGIQ-FDEATPQALADALARALALYHDPACWKRLMQAGMAQDFSWGRSAEAY 474          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_SYNPW (Glycogen synthase OS=Synechococcus sp. (strain WH7803) GN=glgA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.435e-21
Identity = 68/188 (36.17%), Postives = 99/188 (52.66%), Query Frame = -3
Query:  282 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 824
            + QI+VLGTG + +E  L QL   +P +      ++  L+ +I AG+D  L+PSRFEPCG+ QL+AMRYG VP+V   GGLVDTV      ++  TGF    F       +PVD    +  VR   A    ++  E+ + GM QD SW   A +++   +  +V G  EP  D   +   ++   A P
Sbjct:  302 DTQIVVLGTGDRGLESGLWQLASRHPGRVAVFLTYDDALSRLIYAGSDAFLMPSRFEPCGISQLYAMRYGCVPVVRKVGGLVDTVPPHDPRQKSGTGFCFDRF-------EPVDF--YTALVRAWEAFRHPESWKELQRRGMEQDYSWARSALEYDR--MYRDVCGLKEPSPDAAAVEQFSQGQEADP 478          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_PROM1 (Glycogen synthase OS=Prochlorococcus marinus (strain NATL1A) GN=glgA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.435e-21
Identity = 70/181 (38.67%), Postives = 97/181 (53.59%), Query Frame = -3
Query:  282 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGS-FSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 818
            Q++VLGTG + +E  L QL I YP +      ++  L+ +I  GAD  L+PSRFEPCG+ QL AMRYG +PIV   GGLVDTVE      + GS F  D    +P+D    ++ VR   A    ++  E+    M+   SW   AK++E  L+  +V G  EP  D  E+   +    A P
Sbjct:  304 QVVVLGTGDRYLESSLWQLAIEYPGRFSVFLTYDDALSRLIYGGADAFLMPSRFEPCGISQLLAMRYGAIPIVRKVGGLVDTVEPYNPMNETGSGFCFD--RYEPIDF--YTSLVRSWEAYRHQKSWKELQLRAMSNKYSWDRSAKEYE--LMYKDVCGIKEPSPDAAEVEKFSYGQEADP 478          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_BACCR (Glycogen synthase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=glgA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.435e-21
Identity = 64/162 (39.51%), Postives = 91/162 (56.17%), Query Frame = -3
Query:  357 IKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNL 833
            ++E+VQ I+LG+G    E+  E +   YPEK +    FN  LAH + AG+D  L+PS FEPCGL QL A+ YGT+PIV  TGGL DTV   +  TG   G    +  A D +       T+ RA+  Y  + + E ++K  M +D SW+  A  ++E   +L
Sbjct:  319 MEEDVQCIILGSGDSEYEQFFEWMAYEYPEKVKVYIGFNEELAHQVYAGSDLFLMPSLFEPCGLGQLIALAYGTIPIVRETGGLNDTVHSYDEETGEGNGFSFTNFNAHDMLH------TIHRAIEFYHDKPVWEQLVKQAMTEDYSWEQSALAYKELYKSL 474          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_BACC4 (Glycogen synthase OS=Bacillus cereus (strain B4264) GN=glgA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.435e-21
Identity = 64/162 (39.51%), Postives = 91/162 (56.17%), Query Frame = -3
Query:  357 IKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNL 833
            ++E+VQ I+LG+G    E+  E +   YPEK +    FN  LAH + AG+D  L+PS FEPCGL QL A+ YGT+PIV  TGGL DTV   +  TG   G    +  A D +       T+ RA+  Y  + + E ++K  M +D SW+  A  ++E   +L
Sbjct:  319 MEEDVQCIILGSGDSEYEQFFEWMAYEYPEKVKVYIGFNEELAHQVYAGSDLFLMPSLFEPCGLGQLIALAYGTIPIVRETGGLNDTVHSYDEETGEGNGFSFTNFNAHDMLH------TIHRAIEFYHDKPVWEQLVKQAMTEDYSWEQSALAYKELYKSL 474          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_RHOP5 (Glycogen synthase OS=Rhodopseudomonas palustris (strain BisA53) GN=glgA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.874e-21
Identity = 61/173 (35.26%), Postives = 92/173 (53.18%), Query Frame = -3
Query:  342 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRA--LATYGTQA----LAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGS 842
            P  + E +Q+ +LG G   +E    Q+   +P +   V  ++  LAH+I AGAD +L+PSRFEPCGL QL A+RYG VP+VA  GGL DTV +          ++       V  + V+  +  A  + T+G  +       + +NGM  D+SW+ PA+ + +   NL  A S
Sbjct:  318 PLLLSEGIQLALLGAGDAALEAAFRQVAQSHPGQIGVVVGYDEDLAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLSDTVVDA------NEMAIAAGVATGVQFSPVTRDMLAAALIKTHGLYSDRTTWQALQQNGMRSDVSWRNPAQHYAQLYRNLLAARS 484          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_HAEPS (Glycogen synthase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=glgA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.874e-21
Identity = 62/164 (37.80%), Postives = 89/164 (54.27%), Query Frame = -3
Query:  372 IKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGF---------TGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWEE 833
            ++ NVQ++VLG+G   +E  L   +  YP K      ++  L+H IIAG D IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +           TGF    FS         D       V RA+  +G   L + + +N +AQD  W   A++++E
Sbjct:  318 MQHNVQLVVLGSGSPDLEWALRDAQSRYPHKIGLKIGYDEALSHQIIAGGDVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVNDAHKESIENRTATGF---VFSYP-------DADNFYDAVLRAINLWGKNKLWSSVRQNALAQDFGWAKVAQQYQE 471          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_BACAN (Glycogen synthase OS=Bacillus anthracis GN=glgA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.874e-21
Identity = 64/162 (39.51%), Postives = 93/162 (57.41%), Query Frame = -3
Query:  357 IKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEETLLNL 833
            ++E+VQ I+LG+G    E+  E +   YPEK +    FN  LAH + AG+D  L+PS FEPCGL QL A+ YGT+PIV  TGGL DTV+  +  TG   G    +  A D +       TV RA+  Y  +++ E ++K  M +D SW+  A  +++   +L
Sbjct:  319 MEEDVQCIILGSGDSEYEQFFEWMAYEYPEKVKVYIGFNEELAHQVYAGSDLFLMPSLFEPCGLGQLIALAYGTIPIVRETGGLNDTVQSYDEETGEGNGFSFTNFNAHDMLH------TVLRAIEFYHDKSVWEQLVKQAMTEDYSWEKSALAYKKLYKSL 474          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: SSY3_SOLTU (Soluble starch synthase 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS3 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.448e-21
Identity = 62/164 (37.80%), Postives = 87/164 (53.05%), Query Frame = -3
Query:  372 IKENVQIIVLGTGKKPMEKQ-----LEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDT---VEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKWEE 833
            ++ N Q+++LG+   P  +        QL   Y ++AR    ++ PL+H+I AGADFIL+PS FEPCGL QL AMRYG++P+V  TGGL DT   V+      Q      +  + D  D   V   + RAL+ +  G      + K  M QD SW  PA  + E
Sbjct: 1058 LERNGQVVLLGSAPDPRVQNNFVNLANQLHSKYNDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLYDTVFDVDHDKERAQQCGLEPNGFSFDGADAGGVDYALNRALSAWYDGRDWFNSLCKQVMEQDWSWNRPALDYLE 1221          
The following BLAST results are available for this feature:
BLAST of CV885190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
GLGA_XANAC1.435e-2137.18Glycogen synthase OS=Xanthomonas axonopodis pv. ci... [more]
GLGA_THISH1.435e-2139.19Glycogen synthase OS=Thioalkalivibrio sp. (strain ... [more]
GLGA_SYNPW1.435e-2136.17Glycogen synthase OS=Synechococcus sp. (strain WH7... [more]
GLGA_PROM11.435e-2138.67Glycogen synthase OS=Prochlorococcus marinus (stra... [more]
GLGA_BACCR1.435e-2139.51Glycogen synthase OS=Bacillus cereus (strain ATCC ... [more]
GLGA_BACC41.435e-2139.51Glycogen synthase OS=Bacillus cereus (strain B4264... [more]
GLGA_RHOP51.874e-2135.26Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_HAEPS1.874e-2137.80Glycogen synthase OS=Haemophilus parasuis serovar ... [more]
GLGA_BACAN1.874e-2139.51Glycogen synthase OS=Bacillus anthracis GN=glgA PE... [more]
SSY3_SOLTU2.448e-2137.80Soluble starch synthase 3, chloroplastic/amyloplas... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885190 ID=CV885190; Name=CV885190; organism=Citrus sinensis; type=EST; length=844bp
TTTTTTTTTTTTGATCTATAAACTTGTTCAGTTGAACTTTTTCATTTCAG
GAGAGTGGCGACAGCCCTCAGAGCCCTTTTACAAAACTGTAAAACAGAAC
TTAATATTTCATTATACAAGGTAAACACTAATGTCTCAACTCCAAACCAT
TATTGAAAATAGCGCATGCTGCATATACTGCCAACCTATGTTATTTCCTA
AGTAATATCTTGGGTTGTGGAGAATTACAGGAACATGTTTGCGGTCCAAA
ATAAAAGTGGAGATTTTTGTAGCCTCGATCAAGGAGTGGCCACATTTTCC
TTGGCAAGAGGAGCAATTTCTTCGCCGTCAATTCCAGGTTCACTACCAGC
AACTTCCAGGTTAAGTAGGGTCTCCTCCCATTTCTTAGCTGGTCCTTTCC
ATGAAAGATCTTGAGCCATGCCATTTTTCATCATTTCAGCCAAAGCTTGA
GTACCATAGGTTGCAAGAGCTCTTCTGACGGTTGTGGACACTGCAGCCAC
ATCTACTGGATCCACAGCCTCACAGTCAACACTGAAGCTTCCCATCTGGA
ATCCTGTAAAGCCTTCTTCCACAGTGTCAACCAAACCACCAGTGGAAGCC
ACGATAGGTACGGTTCCATAACGCATGGCATGTAATTGAATGAGACCACA
AGGTTCAAATCTGCTTGGAATCAAAATAAAATCAGCTCCTGCTATTATCA
TATGCGCCAGAGGAATATTGAATTTCGCTACTCCTCTGGCTTTCTCAGGG
TACAGTATCTCCAACTGTTCAAGCTGCTTCTCCATTGGTTTTTTGCCCGT
ACCAAGGACTATTATCTGAACATTCTCTTTGATGAAATGGGGAA
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