CV885190

Overview
NameCV885190
Unique NameCV885190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_KOSOT (Glycogen synthase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=glgA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.448e-21
Identity = 57/153 (37.25%), Postives = 87/153 (56.86%), Query Frame = -3
Query:  378 IKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 833
            +  ++Q +VLGTG++  E+  + L   +PEK      FN+ LA  I AG+D  L+PSR+EPCGL Q+ AMRYGT+P+V  TGGL DTV+E    F   +   +    +  +   +   V +A+  Y  + L  ++M N M  D SW   A+++
Sbjct:  310 LSNDLQFVVLGTGEERYERLFKSLGERFPEKVSANITFNVDLAQKIYAGSDMFLMPSRYEPCGLGQMFAMRYGTIPVVRFTGGLRDTVKE----FNPETLEGNGFGFEEYNPDKLLEAVEKAIKIYENKTLWNQLMLNAMNTDCSWDKSAREY 458          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_XANOR (Glycogen synthase OS=Xanthomonas oryzae pv. oryzae GN=glgA PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.197e-21
Identity = 58/156 (37.18%), Postives = 84/156 (53.85%), Query Frame = -3
Query:  378 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA-LAEMMKNGMAQDLSWKGPAKKW 842
            P  +    QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+          A+   + RA  T+     LA M +  M +   W     K+
Sbjct:  346 PQIVAAGGQIAVIGGGEPDIERQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE----------ALRRCLERAFRTFRLPGLLAAMRRAAMLRPSGWDVAGNKY 491          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_XANOP (Glycogen synthase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=glgA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.197e-21
Identity = 58/156 (37.18%), Postives = 84/156 (53.85%), Query Frame = -3
Query:  378 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA-LAEMMKNGMAQDLSWKGPAKKW 842
            P  +    QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+          A+   + RA  T+     LA M +  M +   W     K+
Sbjct:  346 PQIVAAGGQIAVIGGGEPDIERQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE----------ALRRCLERAFRTFRLPGLLAAMRRAAMLRPSGWDVAGNKY 491          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_XANOM (Glycogen synthase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=glgA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.197e-21
Identity = 58/156 (37.18%), Postives = 84/156 (53.85%), Query Frame = -3
Query:  378 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA-LAEMMKNGMAQDLSWKGPAKKW 842
            P  +    QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+          A+   + RA  T+     LA M +  M +   W     K+
Sbjct:  346 PQIVAAGGQIAVIGGGEPDIERQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE----------ALRRCLERAFRTFRLPGLLAAMRRAAMLRPSGWDVAGNKY 491          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_XANCP (Glycogen synthase OS=Xanthomonas campestris pv. campestris GN=glgA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.197e-21
Identity = 57/156 (36.54%), Postives = 84/156 (53.85%), Query Frame = -3
Query:  378 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKN-GMAQDLSWKGPAKKW 842
            P  +    QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     S +          A+   + RA  T+   +L   M+   M +   W    KK+
Sbjct:  311 PQIVAAGGQIAVIGGGEPEIEQQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQQASAE----------ALRRCLERAFRTFRLPSLLSAMRRAAMLRPSGWDVAGKKY 456          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_XANC8 (Glycogen synthase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=glgA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.197e-21
Identity = 57/156 (36.54%), Postives = 84/156 (53.85%), Query Frame = -3
Query:  378 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKN-GMAQDLSWKGPAKKW 842
            P  +    QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     S +          A+   + RA  T+   +L   M+   M +   W    KK+
Sbjct:  311 PQIVAAGGQIAVIGGGEPEIEQQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQQASAE----------ALRRCLERAFRTFRLPSLLSAMRRAAMLRPSGWDVAGKKY 456          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_VIBSL (Glycogen synthase OS=Vibrio splendidus (strain LGP32) GN=glgA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.197e-21
Identity = 59/161 (36.65%), Postives = 89/161 (55.28%), Query Frame = -3
Query:  378 FIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE------EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKW 836
            F+K  +QI+++GTG   +  QL++L  L+ +K   V  +N  LAH++ AG+DF L+PS FEPCGL Q+++M YGT+PIV S GGL D+V       E  TGF          A +     A+   + R+L  Y      +  +    M QD SW+  A+++
Sbjct:  326 FLKNELQIVIVGTGDPVLASQLKELSALHSDKFSFVEAYNNELAHLVEAGSDFFLMPSEFEPCGLNQIYSMAYGTLPIVRSVGGLKDSVNDYDQEPEIATGF----------AFEEPTPQALLAVLHRSLLLYAQNPSEIKRVQLYAMQQDFSWEDAAEEY 476          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_PROMT (Glycogen synthase OS=Prochlorococcus marinus (strain NATL2A) GN=glgA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.176e-21
Identity = 70/182 (38.46%), Postives = 98/182 (53.85%), Query Frame = -3
Query:  282 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGS-FSVDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 818
            Q++VLGTG + +E  L QL I YP +      ++  L+ +I  GAD  L+PSRFEPCG+ QL AMRYG +PIV   GGLVDTVE      + GS F  D    +P+D     T++ R+   Y  Q +  ++    M+   SW   AK++E  L+  +V G  EP  D  E+   +    A P
Sbjct:  304 QVVVLGTGDRYLESSLWQLAIEYPGRFSVFLTYDDALSRLIYGGADAFLMPSRFEPCGISQLLAMRYGAIPIVRKVGGLVDTVEPYNPMNETGSGFCFD--RYEPID---FYTSLVRSWEEYRHQKSWKQLQLRAMSNKYSWDRSAKEYE--LMYKDVCGIKEPSPDAAEVEKFSYGQEADP 478          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_MAGSA (Glycogen synthase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=glgA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.176e-21
Identity = 59/172 (34.30%), Postives = 88/172 (51.16%), Query Frame = -3
Query:  333 PHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDT-VEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPG 842
            P+ +K   Q+ V+GTG +P+E         +P +      ++ PLAH ++AG D +L+PSRFEPCGL Q +A RYGTVP+  +TGGL DT V+ G+     G    +    +  +V A    V RA+  Y  +     ++K   AQD  W   A  + +   +L   G   G
Sbjct:  321 PNILKMGAQVAVVGTGDRPLEDGFRAAAAAHPTQVAARIGYSEPLAHRMMAGGDMLLMPSRFEPCGLTQFYAFRYGTVPVAHATGGLADTLVDTGYDTLMTG--KANGFVFEHSNVGAFQWAVERAVGLYAKKDQWTRIVKACNAQDFGWGRSAGLYRDLYKSLTGNGGGKG 490          
BLAST of CV885190 vs. ExPASy Swiss-Prot
Match: GLGA_BACCZ (Glycogen synthase OS=Bacillus cereus (strain ZK / E33L) GN=glgA PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.176e-21
Identity = 63/157 (40.13%), Postives = 90/157 (57.32%), Query Frame = -3
Query:  372 IKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEE 833
            ++E+VQ I+LG+G    E+  E +   YPEK +    FN  LAH + AG+D  L+PS FEPCGL QL A+ YGT+PIV  TGGL DTV+  +  TG   G    +  A D +       TV RA+  Y  + + E ++K  M +D SW+  A  +++
Sbjct:  319 MEEDVQCIILGSGDSEYEQFFEWMAYEYPEKVKVYIGFNEELAHQVYAGSDLFLMPSLFEPCGLGQLIALAYGTIPIVRETGGLNDTVQSYDEETGEGNGFSFTNFNAHDMLH------TVLRAIEFYHDKPVWEQLVKQAMTEDYSWEKSALAYKK 469          
The following BLAST results are available for this feature:
BLAST of CV885190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
GLGA_KOSOT2.448e-2137.25Glycogen synthase OS=Kosmotoga olearia (strain TBF... [more]
GLGA_XANOR3.197e-2137.18Glycogen synthase OS=Xanthomonas oryzae pv. oryzae... [more]
GLGA_XANOP3.197e-2137.18Glycogen synthase OS=Xanthomonas oryzae pv. oryzae... [more]
GLGA_XANOM3.197e-2137.18Glycogen synthase OS=Xanthomonas oryzae pv. oryzae... [more]
GLGA_XANCP3.197e-2136.54Glycogen synthase OS=Xanthomonas campestris pv. ca... [more]
GLGA_XANC83.197e-2136.54Glycogen synthase OS=Xanthomonas campestris pv. ca... [more]
GLGA_VIBSL3.197e-2136.65Glycogen synthase OS=Vibrio splendidus (strain LGP... [more]
GLGA_PROMT4.176e-2138.46Glycogen synthase OS=Prochlorococcus marinus (stra... [more]
GLGA_MAGSA4.176e-2134.30Glycogen synthase OS=Magnetospirillum magneticum (... [more]
GLGA_BACCZ4.176e-2140.13Glycogen synthase OS=Bacillus cereus (strain ZK / ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885190 ID=CV885190; Name=CV885190; organism=Citrus sinensis; type=EST; length=844bp
TTTTTTTTTTTTGATCTATAAACTTGTTCAGTTGAACTTTTTCATTTCAG
GAGAGTGGCGACAGCCCTCAGAGCCCTTTTACAAAACTGTAAAACAGAAC
TTAATATTTCATTATACAAGGTAAACACTAATGTCTCAACTCCAAACCAT
TATTGAAAATAGCGCATGCTGCATATACTGCCAACCTATGTTATTTCCTA
AGTAATATCTTGGGTTGTGGAGAATTACAGGAACATGTTTGCGGTCCAAA
ATAAAAGTGGAGATTTTTGTAGCCTCGATCAAGGAGTGGCCACATTTTCC
TTGGCAAGAGGAGCAATTTCTTCGCCGTCAATTCCAGGTTCACTACCAGC
AACTTCCAGGTTAAGTAGGGTCTCCTCCCATTTCTTAGCTGGTCCTTTCC
ATGAAAGATCTTGAGCCATGCCATTTTTCATCATTTCAGCCAAAGCTTGA
GTACCATAGGTTGCAAGAGCTCTTCTGACGGTTGTGGACACTGCAGCCAC
ATCTACTGGATCCACAGCCTCACAGTCAACACTGAAGCTTCCCATCTGGA
ATCCTGTAAAGCCTTCTTCCACAGTGTCAACCAAACCACCAGTGGAAGCC
ACGATAGGTACGGTTCCATAACGCATGGCATGTAATTGAATGAGACCACA
AGGTTCAAATCTGCTTGGAATCAAAATAAAATCAGCTCCTGCTATTATCA
TATGCGCCAGAGGAATATTGAATTTCGCTACTCCTCTGGCTTTCTCAGGG
TACAGTATCTCCAACTGTTCAAGCTGCTTCTCCATTGGTTTTTTGCCCGT
ACCAAGGACTATTATCTGAACATTCTCTTTGATGAAATGGGGAA
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