CV885189

Overview
NameCV885189
Unique NameCV885189
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885189 vs. ExPASy Swiss-Prot
Match: RLP7_PICJA (Ribosome biogenesis protein RLP7 (Fragment) OS=Pichia jadinii GN=RLP7 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.388e-22
Identity = 60/155 (38.71%), Postives = 93/155 (60.00%), Query Frame = 2
Query:  311 RMKQRGKRSKKVI-GKPKSKLLFIIRIQGT--SDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATV------DRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVCPHFKEVINFLGPLTLNK 748
            R+ Q G +SK++  GKP   L  I+R  G   + +  K +K+L  LRL +I SGVFV+  + +  +L+ + PY     P+L  V++L+ K+   TV      + +++ L DNN++E+ LG  GIICIEDI+HE +++   FK V +FL P  LNK
Sbjct:   14 RVAQDGSKSKEIYSGKPT--LYLIVRTPGPVGAKIPSKVQKVLQLLRLNKINSGVFVKLTETVYPLLKLLSPYTVIXQPSLQTVRQLVQKRATVTVTHANDEEPRQVKLNDNNLVEEKLGDEGIICIEDIIHETSHLATTFKTVTHFLDPFELNK 166          
BLAST of CV885189 vs. ExPASy Swiss-Prot
Match: RLP7_DEBHA (Ribosome biogenesis protein RLP7 OS=Debaryomyces hansenii GN=RLP7 PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 7.037e-22
Identity = 72/224 (32.14%), Postives = 116/224 (51.79%), Query Frame = 2
Query:  137 ETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMK---------QRGKRSKKVIGKPKSKLLFIIRIQGTSD---MHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATV-----DRQRIPLTDNN-IIEQTLG-KYGIICIEDIVHEIANVCPHFKEVINFLGPLTLNKP 751
            E +L+KRK+ +   L ++ Q    +    +KN +   + + R E  +  Y+  EL+  R+K         Q  K S+       +KLLFIIRI   +    +  K +K+L+ LRL R  +GVFV+     + +L+ + PY+  G P+L ++++L  K+   +V        RI   DNN ++E   G   G ICIED++HE+A +  HFK V N++ P  LN P
Sbjct:    9 EILLRKRKNNDRKRLEKQEQARQRQLEQKKKNDQRSKKFV-RAETLVSNYKSNELENKRIKHITKFEKQSQADKISQAKEDDESAKLLFIIRIPDHTKGLKVPSKARKVLHLLRLNRPNTGVFVKLTPATVPLLKLISPYIVAGKPSLNSIRKLFQKRACISVIDEETKEPRITKLDNNGVVEDKFGDDLGCICIEDLIHELATLGEHFKTVSNWILPFKLNAP 231          
BLAST of CV885189 vs. ExPASy Swiss-Prot
Match: RLP7_KLULA (Ribosome biogenesis protein RLP7 OS=Kluyveromyces lactis GN=RLP7 PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.956e-20
Identity = 80/271 (29.52%), Postives = 128/271 (47.23%), Query Frame = 2
Query:  116 QPLAFVAETVLKKRKSTEA-------LALTRKAQLELGKYGHGQKNKKSKVEDI-------KRPEQFIKQYRDQELD---------------LIRMKQRGKRSK-----------------------KVIGKPKSKLLFIIRIQGTSDMH--PKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDR------QRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVCPHFKEVINFLGPLTLNK 748
            QPL    E +L+KR++ +        LA  RK Q E  K    +KN+  + E I       +R +  I++ RD E                 ++R+ +R   SK                       K++   +  LLF+IR++G + +    K  K+L  LRL  + +GVF++    +  +L+ V PY+  G P+LA+++ LI K+      R      + I L DNNI+E+ LG  G+ICIEDI+HEI+ +  +F +   FL P  LN+
Sbjct:    3 QPLNSNPEVLLRKRRNADRTRLEKQELAKKRKEQEE--KQKRSKKNRFVRAETIVATTLATEREKTRIRRVRDLENQKVKNDLSHIPSDRDFILRISEREAGSKATSESELQDVDEEDEEDDGLIREKIVYDGEPSLLFVIRVKGPTAVKIPAKAYKVLSLLRLVELNTGVFIKLTKDVYPLLKLVSPYIVIGQPSLASIRSLIQKRSRIMWQRPEDKEPKEIILNDNNIVEEKLGDEGVICIEDIIHEISTLGENFSKCTFFLLPFKLNR 271          
BLAST of CV885189 vs. ExPASy Swiss-Prot
Match: RLP7_YEAST (Ribosome biogenesis protein RLP7 OS=Saccharomyces cerevisiae GN=RLP7 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.916e-19
Identity = 58/141 (41.13%), Postives = 82/141 (58.16%), Query Frame = 2
Query:  350 GKPKSKLLFIIRIQGTSDMHPKTK--KILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYK------KGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVCPHFKEVINFLGPLTLNK 748
            GKP   LLFI+R++G   ++   K  KIL  LRL    +GVFV+    +  +L+ + PYV  G P+L++++ LI K      KG    +   I L DNNI+E+ LG +GIIC+EDI+HEIA +   F     FL P  LN+
Sbjct:  137 GKPA--LLFIVRVRGPLAVNIPNKAFKILSLLRLVETNTGVFVKLTKNVYPLLKVIAPYVVIGKPSLSSIRSLIQKRGRIIYKGENEAEPHEIVLNDNNIVEEQLGDHGIICVEDIIHEIATMGESFSVCNFFLQPFKLNR 275          
BLAST of CV885189 vs. ExPASy Swiss-Prot
Match: RLP7_CANGA (Ribosome biogenesis protein RLP7 OS=Candida glabrata GN=RLP7 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.916e-19
Identity = 80/278 (28.78%), Postives = 129/278 (46.40%), Query Frame = 2
Query:   89 SDMAEEAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYR--DQELDLIRMKQRGKRSKK----------------------VIGKPKSK--------------------------LLFIIRIQG--TSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQ------RIPLTDNNIIEQTLGKYGIICIEDIVHEIANVCPHFKEVINFLGPLTLNK 748
            SD+  E  ++PL    E +L+KR++ +    TR  + EL +    Q+ ++ K E IK  ++FI+        L   R K+R KR  K                      V  KP+S+                          LLF++R++G   + +  K  +IL  LRL  + + VF++  +    +L+ + PYV  G P+L +++ LI K+      R+       I L DNNI+E+ LG  G+ICI+DI+HEIA +  +F +   FL P  LN+
Sbjct:    2 SDITNE--KKPLNSDPEILLRKRRNADR---TRLEKQELAR----QRQEQRKKEQIKNKKKFIRAESLVANSLATSREKERIKRISKLEHKKLKGDVSHLPSEKNFFLKVTEKPQSEETDDLIDEDEEDGFEREKVAYNGEEQLLFVLRVKGPVAASIPHKAYRILSTLRLEEVNTAVFIKLTETTFSLLKIIAPYVIVGKPSLKSIRSLIQKRSKIVYKREDEEEAKEIILNDNNIVEEKLGDCGVICIDDIIHEIATLGENFTKCNFFLQPFKLNR 270          
BLAST of CV885189 vs. ExPASy Swiss-Prot
Match: RLP7_ASHGO (Ribosome biogenesis protein RLP7 OS=Ashbya gossypii GN=RLP7 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.373e-17
Identity = 51/149 (34.23%), Postives = 82/149 (55.03%), Query Frame = 2
Query:  326 GKRSKKVIGKPKSKLLFIIRIQG--TSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQ------RIPLTDNNIIEQTLGKYGIICIEDIVHEIANVCPHFKEVINFLGPLTLNK 748
            G   +K     ++ LLF++R++G   + +  K  ++L  LRL  + +GVFVR    +  +LQ V PYV  G P+LA+++ L+ K+      R        + L DN ++E+ LG  G+IC+EDI+HEIA +   F +   FL P  L +
Sbjct:   98 GLEREKTAYDGRATLLFVVRVRGPAAAKIPRKAHRVLTLLRLAEVNTGVFVRLTAEVFPLLQVVAPYVVVGRPSLASIRALVQKRARVVHQRAGEAAPVEMVLNDNGVVEERLGDEGVICVEDIIHEIATMGEAFAKCNFFLLPFKLGR 246          
BLAST of CV885189 vs. ExPASy Swiss-Prot
Match: RL7_ENCCU (60S ribosomal protein L7 OS=Encephalitozoon cuniculi GN=RPL7 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.088e-14
Identity = 54/163 (33.13%), Postives = 87/163 (53.37%), Query Frame = 2
Query:  266 EQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLF-IIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVCPHFKEVINFLGPLTLNKP 751
            E+ + +Y +QE +++  K   K    V   PK    F +I I+   +  PK +K+L   RL+RI + V VR N    ++LQ ++ +V +G   +  +++L+Y KG       R+ LT+  I +   GK  I CIE++VH I N    FK+V +FL P  L+ P
Sbjct:   49 EKLLNKYYEQEREILEKKSSMKNGFYV---PKEAEFFAVILIRSKCNCPPKVRKVLELFRLKRINTCVLVRNNKSTRKMLQIIKDHVAFGTIGMELLRKLVYTKGSGRNGHVRVKLTNEFIEDMFDGK--IRCIEELVHHIYNGTEMFKKVNSFLYPFHLSPP 206          
The following BLAST results are available for this feature:
BLAST of CV885189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RLP7_PICJA5.388e-2238.71Ribosome biogenesis protein RLP7 (Fragment) OS=Pic... [more]
RLP7_DEBHA7.037e-2232.14Ribosome biogenesis protein RLP7 OS=Debaryomyces h... [more]
RLP7_KLULA2.956e-2029.52Ribosome biogenesis protein RLP7 OS=Kluyveromyces ... [more]
RLP7_YEAST1.916e-1941.13Ribosome biogenesis protein RLP7 OS=Saccharomyces ... [more]
RLP7_CANGA1.916e-1928.78Ribosome biogenesis protein RLP7 OS=Candida glabra... [more]
RLP7_ASHGO1.373e-1734.23Ribosome biogenesis protein RLP7 OS=Ashbya gossypi... [more]
RL7_ENCCU1.088e-1433.1360S ribosomal protein L7 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885189 ID=CV885189; Name=CV885189; organism=Citrus sinensis; type=EST; length=752bp
CCGCCGCTGTCTTTTCCCTTCACTTGAGTTGCATTTTCTCATACAAATCC
TTCTCTCTTCTCTTCTTCTATTCTTTCTTTTCTCTGCAAGCGATATGGCG
GAAGAAGCGGCACAGCAACCGTTAGCTTTTGTGGCGGAAACGGTGCTGAA
GAAAAGAAAAAGCACCGAGGCTTTGGCGCTGACGAGGAAAGCCCAGTTGG
AATTGGGAAAGTATGGCCATGGACAGAAGAACAAGAAGAGCAAAGTTGAG
GATATCAAAAGACCCGAGCAATTTATCAAACAGTATAGGGACCAGGAATT
GGACCTTATCCGAATGAAACAAAGAGGGAAAAGGTCGAAAAAAGTGATCG
GGAAGCCAAAATCTAAGTTGCTTTTTATTATACGCATACAAGGCACAAGT
GATATGCACCCTAAGACTAAGAAGATTCTCTACAACCTTAGATTGAGGAG
AATTTTCAGTGGTGTCTTTGTCAGGGCTAATGATGGTATGTTAGAAGTGC
TGCAAAAGGTGGAGCCATATGTCACATATGGATATCCTAATCTTGCAAAT
GTGAAGGAGCTAATTTACAAGAAGGGTTATGCAACTGTAGATAGGCAAAG
AATTCCTCTCACAGACAATAACATTATTGAACAGACGTTGGGGAAATATG
GCATTATATGCATTGAGGATATAGTACATGAAATAGCCAATGTTTGTCCT
CATTTTAAAGAGGTCATCAACTTTCTGGGTCCTTTAACACTAAACAAGCC
TG
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