CV885176

Overview
NameCV885176
Unique NameCV885176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length915
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885176 vs. ExPASy Swiss-Prot
Match: GLYA_GEOMG (Serine hydroxymethyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=glyA PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.643e-55
Identity = 114/218 (52.29%), Postives = 145/218 (66.51%), Query Frame = 3
Query:  261 DPEVREIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY 914
            DP V E I  E ERQ  +LELIASENF S AVMEA GS LTNKY+EG PGKRYYGG  ++D +E L  +RA   F  D      NVQP SGS AN  VY ++LKP D I+G++L HGGHL+HG       V+ +  +F  +PY + + T  +D++ +E+ A+  +PKLI+ GASAYPR  D+   R IAD VGAL+M+DMAHI+GLVAA +   P  Y
Sbjct:    8 DPAVAEAIRHETERQEYNLELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCHHVDVVENLAIERAKELFGADH----ANVQPHSGSQANMAVYFSVLKPGDTILGMNLSHGGHLTHG-----SPVNFSGRFFNVVPYGVSQETETIDFNEVERLALEHKPKLIVVGASAYPRVLDFAAFRAIADKVGALVMVDMAHIAGLVAAGLHPSPVPY 216          
BLAST of CV885176 vs. ExPASy Swiss-Prot
Match: GLYA_CLOD6 (Serine hydroxymethyltransferase OS=Clostridium difficile (strain 630) GN=glyA PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.643e-55
Identity = 114/220 (51.82%), Postives = 153/220 (69.55%), Query Frame = 3
Query:  246 SLGEADPEVREIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADP 905
            +L +ADPE+ E + +E +RQ +++ELIASEN  S  VME +GS LTNKY+EG  GKRYYGG EYIDE+ETL   R    F  +      NVQP SG+ AN  VY A+LKP D +MG++L  GGHL+HG       +SG   Y++   Y +D+ +GL+D+D + K A   +PK+I+AGASAYPR+ D+ + R+IAD VGALLM+DMAHI+GLVAA +  +P
Sbjct:    4 NLKKADPEIYESMKRELKRQQRNIELIASENIVSVPVMETMGSHLTNKYAEGYSGKRYYGGCEYIDEVETLAIDRIKKIFGAEH----ANVQPHSGANANIGVYFAMLKPGDVVMGMNLSQGGHLTHGAPV---NISGQ--YYKFYEYGIDKDSGLIDFDEVRKIAHEVKPKMIVAGASAYPREIDFKKFREIADEVGALLMVDMAHIAGLVAAGLHQNP 214          
BLAST of CV885176 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB8 (Serine hydroxymethyltransferase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=glyA PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.643e-55
Identity = 114/218 (52.29%), Postives = 146/218 (66.97%), Query Frame = 3
Query:  261 DPEVREIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY 914
            D E+ ++I KE  RQ K +ELIASEN  S AVMEA+GS LTNKY+EG P KRYYGG   +DE+E +   RA   F  +      NVQP SGS AN  VY A+L+P D ++G+DL HGGHL+HG       V+ +   F  + Y +D+ T ++DY+ + K AI  +PKLI+AGASAY R  D+P+ R+IAD VGALLM+DMAHI+GLVAA V   P  Y
Sbjct:   10 DKEIYDLIEKELVRQQKGIELIASENIVSPAVMEAMGSYLTNKYAEGYPNKRYYGGCHVVDEIEQIAIDRAKELFGAEH----ANVQPHSGSQANMAVYFAVLEPGDTVLGMDLSHGGHLTHG-----SPVNFSGKLFNFVSYGVDKETEMIDYENVRKLAIENKPKLIVAGASAYARILDFPKFREIADEVGALLMVDMAHIAGLVAAGVHPSPVPY 218          
BLAST of CV885176 vs. ExPASy Swiss-Prot
Match: GLYA_PROA2 (Serine hydroxymethyltransferase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=glyA PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.474e-54
Identity = 115/222 (51.80%), Postives = 148/222 (66.67%), Query Frame = 3
Query:  249 LGEADPEVREIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY 914
            L + D E+ + I+ E  RQ ++LELIASENF S+AVMEA GS +TNKY+EG PGKRYYGG E++D  E L ++RA   F        VNVQP SGS AN  V  ++LKP D IMGLDL HGGHL+HG       V+ +   F++  Y +D  TGL+D D +E  A+  RP+LII GASAY + FD+   RQIAD VGA LM D+AH +GL+AA ++ DP  +
Sbjct:    6 LQKQDKEIFDAISNEVLRQTETLELIASENFASKAVMEACGSVMTNKYAEGYPGKRYYGGCEFVDVAEDLARERAKKLFGCQY----VNVQPHSGSSANMGVLFSVLKPGDTIMGLDLSHGGHLTHG-----SSVNFSGQLFDAHSYGVDRETGLIDMDRVEDMALSVRPRLIICGASAYSQGFDFKAFRQIADKVGAFLMADIAHPAGLIAAGLLNDPMPH 218          
BLAST of CV885176 vs. ExPASy Swiss-Prot
Match: GLYA_CHLSY (Serine hydroxymethyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=glyA PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.474e-54
Identity = 116/219 (52.97%), Postives = 146/219 (66.67%), Query Frame = 3
Query:  249 LGEADPEVREIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADP 905
            L   DP + ++I +E +RQ + LELIASEN+TS AVMEA GS LTNKY+EGLPG+RYYGG E++D +E L  +RA   F         NVQP SG+ AN  V+TA+L+P D I+G+ L HGGHL+HG       V+ +  ++    Y +D  TG +DYD L   A   RPKLI +GASAYPR  D+ RMRQIAD VGALLM D+AHI+GLVAA     P
Sbjct:    5 LRATDPIIADLIEREAQRQRQGLELIASENYTSLAVMEAQGSVLTNKYAEGLPGRRYYGGCEFVDAIEQLAIERACQLFGTSH----ANVQPHSGAQANIAVFTALLQPGDTILGMRLDHGGHLTHG-----SPVNFSGKWYNVHFYGVDAQTGQIDYDDLASKARAIRPKLITSGASAYPRIIDFARMRQIADEVGALLMADIAHIAGLVAAGEHPSP 214          
BLAST of CV885176 vs. ExPASy Swiss-Prot
Match: GLYA_PETMO (Serine hydroxymethyltransferase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=glyA PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.926e-54
Identity = 114/222 (51.35%), Postives = 148/222 (66.67%), Query Frame = 3
Query:  249 LGEADPEVREIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY 914
            L  +D EV EI+ KE +RQ   LELIASEN+ S++VMEA GS  TNKY+EG P +RYYGG EYIDE+ETL + RA   FN        NVQP SGS AN   Y A++KP D +MG+ L HGGHL+HG       V+ + + F  + Y +DE T  ++YD +E+ A   +PK+I+AG SAY R  D+ R R+IAD VGA LM+DMAH +GLVAA +  +P +Y
Sbjct:    5 LKSSDNEVYEILQKELKRQEYGLELIASENYASKSVMEAAGSIFTNKYAEGYPKRRYYGGCEYIDEVETLARDRAKELFNAK----FANVQPHSGSQANMGAYLALMKPGDTLMGMSLSHGGHLTHG-----APVNFSGMLFNVVSYGVDEETETINYDEVERIAKDAKPKVIVAGGSAYSRIIDFKRFREIADEVGAYLMVDMAHFAGLVAAGIHPNPVEY 217          
BLAST of CV885176 vs. ExPASy Swiss-Prot
Match: GLYA3_PSEPF (Serine hydroxymethyltransferase 3 OS=Pseudomonas fluorescens (strain Pf0-1) GN=glyA3 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.515e-54
Identity = 109/218 (50.00%), Postives = 148/218 (67.89%), Query Frame = 3
Query:  261 DPEVREIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY 914
            D  +   +  E++RQ   +ELIASEN+TS+ VM+A GS LTNKY+EG PGKRYYGG E++D++E L  +RA   F  D      NVQP SGS AN  VY A+L+  D I+G+ L HGGHL+HG      +VS +   + ++ Y +D  TGL+DYD +E+ A+  +PK+I+AG SAY +  D+PR RQIAD VGALL +DMAH++GLVAA +  +P  Y
Sbjct:   12 DDALLAAMNAEEQRQEDHIELIASENYTSKRVMQAQGSGLTNKYAEGYPGKRYYGGCEHVDKVEALAIERAKQLFGADY----ANVQPHSGSSANSAVYLALLQAGDTILGMSLAHGGHLTHG-----AKVSSSGKLYNAVQYGIDTKTGLIDYDEVERLAVECKPKMIVAGFSAYSKTLDFPRFRQIADKVGALLFVDMAHVAGLVAAGLYPNPLPY 220          
BLAST of CV885176 vs. ExPASy Swiss-Prot
Match: GLYA_SYNWW (Serine hydroxymethyltransferase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=glyA PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.285e-54
Identity = 115/218 (52.75%), Postives = 144/218 (66.06%), Query Frame = 3
Query:  261 DPEVREIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY 914
            DPEV E I KE+ RQ   LELIASENF SRAVM A GS +TNKY+EGLPG RYYGG EY+D +E L + R    F  +      NVQP SG+ AN  VY A L+P   IMG++L HGGHL+HG    K  +SG   YF  + Y ++  T  +DY+ L + A+  RP++I+AGASAYPR  D+ + R+IAD  GALL +DMAHI+GLVAA +   P  Y
Sbjct:   12 DPEVAEAIEKEEARQNNKLELIASENFVSRAVMAAQGSVMTNKYAEGLPGARYYGGCEYVDIVEELARDRVKEIFGAEH----ANVQPHSGAQANTAVYFAALQPGQTIMGMNLNHGGHLTHG---SKVNISGK--YFNIVDYGVNRDTERIDYEELREIALKARPQMIVAGASAYPRILDFKKFREIADEAGALLFVDMAHIAGLVAAGLHPSPVPY 220          
BLAST of CV885176 vs. ExPASy Swiss-Prot
Match: GLYA_SYNSC (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain CC9605) GN=glyA PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.285e-54
Identity = 115/223 (51.57%), Postives = 148/223 (66.37%), Query Frame = 3
Query:  237 VDYSLGEADPEVREIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADP 905
            +D  L ++DP++   I +E++RQ   LELIASENF SRAVM+A GS LTNKY+EGLP KRYYGG E++D +E L  +RA   F      W  NVQP SG+ ANF V+ A+L+P D IMGLDL HGGHL+HG       VSG   +F  + Y +D+ T  +D + + + A+  +PKLI+ G SAYPR  D+   R IAD VGA L+ DMAHI+GLVAA V   P
Sbjct:    9 IDADLAQSDPDIAAFINQERQRQETHLELIASENFASRAVMQAQGSVLTNKYAEGLPSKRYYGGCEHVDAIEELAIERAKQLFGA---AW-ANVQPHSGAQANFAVFLALLQPGDTIMGLDLSHGGHLTHGSPV---NVSGK--WFNVVQYGVDKETQRLDMEAIRQLALEHKPKLIVCGYSAYPRTIDFAAFRAIADEVGAYLLADMAHIAGLVAAGVHPSP 222          
BLAST of CV885176 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBK (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Okra / Type B1) GN=glyA PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.285e-54
Identity = 109/223 (48.88%), Postives = 152/223 (68.16%), Query Frame = 3
Query:  246 SLGEADPEVREIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY 914
            +L   DPE+ ++I KE+ERQ  ++ELIASENFTS +VMEA+GS LTNKY+EG P KRYYGG E++DE+E L ++R    F  +      NVQP SGS AN  VY ++L+  D I+G+DL HGGHL+HG       V+ +   +  + Y +D+ T  +DYD L+K A+  RPK+I++GASAYPR  D+ ++R+I D + A +M+DMAHI+GLVA  +   P  Y
Sbjct:    5 NLKNTDPELLDMIKKEEERQEYNIELIASENFTSLSVMEAMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFVAEH----ANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTHG-----SPVNFSGKLYNFISYGVDKETETIDYDQLKKIALENRPKMIVSGASAYPRIIDFEKIREICDEIDAYMMVDMAHIAGLVATGIHPSPVPY 218          
The following BLAST results are available for this feature:
BLAST of CV885176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_GEOMG8.643e-5552.29Serine hydroxymethyltransferase OS=Geobacter metal... [more]
GLYA_CLOD68.643e-5551.82Serine hydroxymethyltransferase OS=Clostridium dif... [more]
GLYA_CLOB88.643e-5552.29Serine hydroxymethyltransferase OS=Clostridium bei... [more]
GLYA_PROA21.474e-5451.80Serine hydroxymethyltransferase OS=Prosthecochlori... [more]
GLYA_CHLSY1.474e-5452.97Serine hydroxymethyltransferase OS=Chloroflexus au... [more]
GLYA_PETMO1.926e-5451.35Serine hydroxymethyltransferase OS=Petrotoga mobil... [more]
GLYA3_PSEPF2.515e-5450.00Serine hydroxymethyltransferase 3 OS=Pseudomonas f... [more]
GLYA_SYNWW3.285e-5452.75Serine hydroxymethyltransferase OS=Syntrophomonas ... [more]
GLYA_SYNSC3.285e-5451.57Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_CLOBK3.285e-5448.88Serine hydroxymethyltransferase OS=Clostridium bot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885176 ID=CV885176; Name=CV885176; organism=Citrus sinensis; type=EST; length=915bp
CAAGATGCGGCTTGTAGTGGAGCTGCAGTTATGGGTTCTCTGCACAGCCC
ATTTGGGTTAAGGGCCCTCGTTTGCCTTCCGAAGGGTCTGTGATGGTTGG
ATTTCCAAATCAGATTAGGCTCAATATGGTGAAGCCTTGTAGATGTTCTT
CAATTGAAGGAAGTTTGGTTACTGGGAGACCACCATCTTCTGTATCTGTC
CCTATACCTGAAATTGGAGGTGATGGAAGCAGCTTTGTGGATTACAGCCT
GGGTGAGGCAGATCCAGAGGTCCGTGAAATTATCACTAAGGAGAAGGAGA
GGCAGTTTAAGAGCCTTGAGCTTATAGCATCAGAAAATTTTACATCCCGA
GCAGTGATGGAGGCAGTTGGTTCATGCCTCACAAACAAATATTCTGAAGG
ACTGCCTGGTAAAAGATACTATGGTGGTAACGAGTACATTGATGAGCTTG
AAACCCTTTGTCAGAAAAGGGCTTTGGCAGCATTTAACCTAGATGAAAAT
AAGTGGGGTGTTAATGTTCAACCGCTGTCTGGTTCTCCTGCTAACTTTGA
AGTTTATACTGCAATTCTTAAACCTCATGATCGAATAATGGGTTTGGATT
TACCACATGGTGGACATTTGTCTCATGGGTTCATGACTCCTAAAAGACGG
GTTTCTGGCACCTCAATTTATTTTGAGTCTATGCCTTATCGACTTGACGA
ATCTACAGGCCTTGTTGATTATGACATGCTTGAGAAAACTGCTATTCTCT
TTCGACCGAAACTCATAATTGCTGGTGCTAGTGCTTATCCTCGTGATTTT
GACTATCCTCGCATGAGGCAGATTGCAGATGCTGTTGGTGCTTTGCTCAT
GATGGATATGGCTCACATAAGTGGCCTTGTTGCTGCCTCTGTGGTTGCTG
ACCCCTTCAAGTACT
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