CV885175

Overview
NameCV885175
Unique NameCV885175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYD_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=SPAC24C9.12c PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.063e-51
Identity = 103/203 (50.74%), Postives = 134/203 (66.01%), Query Frame = -3
Query:  284 KYCDVVTTTTHKSLRVPRGGMIFF--------KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLV--QGSKLQDF 862
            +Y DVVTTTTHKSLR PRG MIFF        KK   +  +LE  IN +VFPG QGGPHNHTI  LAV LK  Q P +K YQ +VV N +       + GYKL + G+D+H+VLVD++  G+DGAR E++L++  I  NKN+VP DKSA  P GIR+G+PAMTTRGF E++FV + D+I   +      +K +    +KL+DF
Sbjct:  232 EYADVVTTTTHKSLRGPRGAMIFFRRGLRKHDKKGNPIYYDLEDKINFSVFPGHQGGPHNHTITALAVALKQCQEPAYKEYQAQVVKNAKVCEEEFKKRGYKLAADGTDSHMVLVDVKSKGVDGARAERVLELINIVTNKNTVPSDKSAFSPSGIRVGTPAMTTRGFKEQDFVRVVDYIDRALTFAANLQKELPKDANKLKDF 434          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYC_ENCCU (Serine hydroxymethyltransferase, cytosolic OS=Encephalitozoon cuniculi GN=SHMT-1 PE=3 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 8.712e-46
Identity = 101/229 (44.10%), Postives = 140/229 (61.14%), Query Frame = -3
Query:  191 KYCDVVTTTTHKSLRVPRGGMIFFKKDPVLG---VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQ--DFMNFVTSPNFSLMNNVADLRGRVEALTTQFPI 862
            ++CD+V TTT K LR PRG +IF+++        V+L++ IN AVFP LQGGPHNHTI G+A  L HA +PEF  Y  +VV N R L SRL  LG  +++GG+DNH++LVDLR  G+DGA VE + D   I+LN+N++ G+ S L P GIR+G+ A+T RGF  +E   + D I   V++    +++  G K+   D     +         V  LR RV AL   +PI
Sbjct:  233 EHCDIVMTTTQKGLRGPRGALIFYRRAVTKNGETVDLDARINFAVFPMLQGGPHNHTIAGIASALLHAGTPEFAEYTRRVVENSRELCSRLQSLGLDILTGGTDNHMLLVDLRSTGVDGAAVEHMCDALGISLNRNAIVGNSSPLSPSGIRVGTYAVTARGFGPEEMREVGDIIGGVVKL---CREMTGGRKMSKADLHRVTSDARVMGSEQVLVLRRRVCALAEAYPI 458          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYA1_RALSO (Serine hydroxymethyltransferase 1 OS=Ralstonia solanacearum GN=glyA1 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 7.376e-45
Identity = 103/224 (45.98%), Postives = 135/224 (60.27%), Query Frame = -3
Query:  191 YCDVVTTTTHKSLRVPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPI 859
            + D VTTTTHKSLR PRGG+I  K       E E AIN+A+FPG+QGGP  H I G AV  K AQSP FK YQ +VV N RA+A  L+  G ++VSG +++H++LVDLR   I G   EK+L  A+IT+NKN++P D +   V  GIR+GSPAMTTRGF E E V +A  I + ++                      +P+     N+A +R +V  LT QFP+
Sbjct:  220 HADFVTTTTHKSLRGPRGGVILMK------AEHEKAINSAIFPGIQGGPLMHVIAGKAVAFKEAQSPTFKAYQEQVVKNARAMAETLMARGLRIVSGRTESHVMLVDLRAKSITGKEAEKVLGDAHITVNKNAIPNDPEKPFVTSGIRLGSPAMTTRGFKEGEAVKVAHLIADVLD----------------------NPHDEA--NIAAVRAKVAELTKQFPV 413          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYA_ANATD (Serine hydroxymethyltransferase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=glyA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.633e-45
Identity = 91/176 (51.70%), Postives = 124/176 (70.45%), Query Frame = -3
Query:  338 KYCDVVTTTTHKSLRVPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 862
            +Y D VTTTTHK+LR PRGG+I  K+      +    I+ ++FPG+QGGP  H I   AV LK A + EFK YQ +++ N +AL++RL+E G++LVSGG+DNHL+LVDLR  GI G   EKILD   IT NKN+VP D +S ++  GIR+G+PA+TTRGF E + + +AD IH+ +
Sbjct:  218 EYADFVTTTTHKTLRGPRGGLILCKE------KYAKLIDKSIFPGIQGGPLEHVIAAKAVALKEAMTEEFKNYQVQILKNAKALSTRLIERGFRLVSGGTDNHLMLVDLRNKGITGKDAEKILDEHNITCNKNAVPFDTQSPMITSGIRLGTPAVTTRGFKEGDMLEVADIIHDAL 387          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYA_POLSQ (Serine hydroxymethyltransferase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.643e-44
Identity = 102/226 (45.13%), Postives = 135/226 (59.73%), Query Frame = -3
Query:  185 YCDVVTTTTHKSLRVPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 859
            + D+VT+TTHKSLR PRGG+I  K       E E AIN+AVFPGLQGGP  H I G A   K A  P FK YQ +VV+N +ALA  L+  G ++VSGG+D+H++LVDLR   + G   E +L  A+IT NKN +P D +  +V  GIR+GSPAMTTRGF E E V + +FI + ++                      +PN     N+A +R +V  LT +FP+ G
Sbjct:  219 HADIVTSTTHKSLRGPRGGIILMK------AEHEKAINSAVFPGLQGGPLMHVIAGKAAAFKEAAEPGFKDYQKQVVANAKALAETLIARGLRIVSGGTDSHVMLVDLRAKKMTGKEAEHVLGEAHITCNKNGIPNDPEKPMVTSGIRLGSPAMTTRGFKEAEAVQVGNFIADVLD----------------------NPNDP--ENIAKVRAQVAELTKRFPVYG 414          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYA_CALS8 (Serine hydroxymethyltransferase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=glyA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.803e-44
Identity = 89/176 (50.57%), Postives = 123/176 (69.89%), Query Frame = -3
Query:  338 KYCDVVTTTTHKSLRVPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 862
            +Y D VTTTTHK+LR PRGG+I  K+      +    I+ ++FPG+QGGP  H I   AV LK A + EF+ YQ +++ N +AL+ RL+E G++LVSGG+DNHL+LVDLR  GI G   EK LD   IT NKN++P D +S +V  GIR+G+PA+TTRGF E++ + +AD IH+ +
Sbjct:  220 EYADFVTTTTHKTLRGPRGGLILCKE------KYAKLIDKSIFPGIQGGPLEHVIAAKAVALKEAMTEEFRNYQIQILKNAKALSERLIERGFRLVSGGTDNHLMLVDLRNKGITGKDAEKRLDSLNITCNKNAIPFDTQSPMVTSGIRLGTPAVTTRGFKEEDMIEVADIIHDAL 389          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYA_RALPJ (Serine hydroxymethyltransferase OS=Ralstonia pickettii (strain 12J) GN=glyA PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.660e-44
Identity = 102/226 (45.13%), Postives = 135/226 (59.73%), Query Frame = -3
Query:  185 YCDVVTTTTHKSLRVPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 859
            + D VTTTTHKSLR PRGG+I  K       E E AIN+A+FPG+QGGP  H I G AV  K A SPEFK YQ +VV N  A+A  L+  G ++VSG +++H++LVDLR   I G   EK+L  A+IT+NKN++P D +   V  G+R+GSPAMTTRGF E E V +A  I + ++                      +P+     N+A +R +V  LT QFP+ G
Sbjct:  220 HADFVTTTTHKSLRGPRGGVILMK------AEHEKAINSAIFPGIQGGPLMHVIAGKAVAFKEALSPEFKAYQEQVVKNAAAMAETLMARGLRIVSGRTESHVMLVDLRAKKITGKEAEKVLGDAHITVNKNAIPNDPEKPFVTSGVRLGSPAMTTRGFKEAEAVKVAHLIADVLD----------------------NPHDEA--NIAAVRAKVAELTKQFPVYG 415          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYA_DICTD (Serine hydroxymethyltransferase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=glyA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.244e-44
Identity = 94/173 (54.34%), Postives = 115/173 (66.47%), Query Frame = -3
Query:  344 YCDVVTTTTHKSLRVPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHE 859
            Y   VT+TTHK+LR PRGG I  KK      E    I+ AVFPG+QGGP  H I   AV  K A SPEFK YQ ++V N +A+A  L++LGY+LVSGG+DNHL+LVDLR  GI G   EK L+ A IT+NKN++P D +   +  GIRIG+PA+TTRG  E E   IA  IHE
Sbjct:  216 YAHFVTSTTHKTLRGPRGGFILCKK------EFAKEIDKAVFPGIQGGPLMHVIAAKAVAFKEAMSPEFKEYQKQIVLNAKAMAEELIKLGYRLVSGGTDNHLMLVDLRDKGITGKEAEKALEEAGITVNKNAIPFDPQPPTITSGIRIGTPALTTRGMKEDEMRYIARLIHE 382          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYA_SYMTH (Serine hydroxymethyltransferase OS=Symbiobacterium thermophilum GN=glyA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.391e-43
Identity = 92/176 (52.27%), Postives = 115/176 (65.34%), Query Frame = -3
Query:  338 KYCDVVTTTTHKSLRVPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGV 862
            ++  VVTTTTHK+LR PRGG I  KK      E    I+ AVFPG+QGGP  H I   AV  K    P+++ Y  +VV N +ALA  L+E GY+LV+GG+DNHL+LVDLRP GI G   E +LD   IT+NKN++P D +  +V  GIRIG+PAMTTRG  E E V IAD I   +
Sbjct:  215 EHAHVVTTTTHKTLRGPRGGAILCKK------EFAKEIDKAVFPGMQGGPLMHIIAAKAVAFKQLSDPDYRAYCGQVVKNAKALAQALLERGYRLVTGGTDNHLMLVDLRPKGITGRDAEHLLDRVSITVNKNAIPNDPEKPMVTSGIRIGTPAMTTRGMKEAEMVQIADLIDRAI 384          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYA_POLSJ (Serine hydroxymethyltransferase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=glyA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.391e-43
Identity = 97/224 (43.30%), Postives = 136/224 (60.71%), Query Frame = -3
Query:  191 YCDVVTTTTHKSLRVPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPI 859
            + DVVT+TTHKSLR PRGG+I  K       E E AIN+A+FPGLQGGP  H I   AV  K A SPEFK YQ +V++N R +A  L + G ++VSG +++HL+LVDLR  GI G   E +L  A++T+NKN++P D +  +V  G+RIG+PAMTTRGF ++E    A+ I + ++   +A                         N+  +R +V ALT++FP+
Sbjct:  219 HADVVTSTTHKSLRGPRGGIILMK------AEHEKAINSAIFPGLQGGPLMHVIAAKAVAFKEALSPEFKTYQQQVLTNARIVAETLTQRGLRIVSGRTESHLMLVDLRAKGITGKEAEAVLGSAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGFKDEEARVTANLIADVLDNPRDAA------------------------NIEAVRAKVNALTSRFPV 412          
The following BLAST results are available for this feature:
BLAST of CV885175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYD_SCHPO1.063e-5150.74Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYC_ENCCU8.712e-4644.10Serine hydroxymethyltransferase, cytosolic OS=Ence... [more]
GLYA1_RALSO7.376e-4545.98Serine hydroxymethyltransferase 1 OS=Ralstonia sol... [more]
GLYA_ANATD9.633e-4551.70Serine hydroxymethyltransferase OS=Anaerocellum th... [more]
GLYA_POLSQ1.643e-4445.13Serine hydroxymethyltransferase OS=Polynucleobacte... [more]
GLYA_CALS82.803e-4450.57Serine hydroxymethyltransferase OS=Caldicellulosir... [more]
GLYA_RALPJ3.660e-4445.13Serine hydroxymethyltransferase OS=Ralstonia picke... [more]
GLYA_DICTD6.244e-4454.34Serine hydroxymethyltransferase OS=Dictyoglomus tu... [more]
GLYA_SYMTH1.391e-4352.27Serine hydroxymethyltransferase OS=Symbiobacterium... [more]
GLYA_POLSJ1.391e-4343.30Serine hydroxymethyltransferase OS=Polaromonas sp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885175 ID=CV885175; Name=CV885175; organism=Citrus sinensis; type=EST; length=864bp
AAAGACCATTAGATAAAAATTTGGCCCTATAATTCATCATTTTCCATAAG
TAATTTAACCCCTATATTATAATAATTTAATTTTCCCCTGCAGTTCACAC
AAGCAAAAACATAGTGCCTGTCATTTTCCCCCATGAGAAAGCATCAAACG
GGTTTTAACCTGTAAAACAACTATACAATCATACTCCGGGGATGGGAAAC
TGGGTTGTGAGAGCTTCAACCCGACCACGAAGATCGGCGACATTATTCAT
CAACGAGAAATTGGGTGATGTGACAAAATTCATGAAGTCTTGGAGCTTTG
ATCCTTGAACCAACTTTTTAGCTTCCAGGGTTATTTCTACACCCTCGTGT
ATAAAGTCAGCAATTGCAACAAATTCTTTCTCAGAAAATCCTCTAGTTGT
CATTGCAGGTGAGCCAATGCGAATACCACCCGGCACTAGAGCACTCTTGT
CACCAGGCACTGAATTTTTGTTGAGAGTGATGTAGGCCATGTCAAGAATT
TTCTCTACCCGAGCCCCATCAATACCCATCGGCCTTAGATCTACAAGAAC
CAGGTGATTGTCGCTCCCTCCTGACACCAGCTTGTAACCTAATTCAACCA
ATCGGCTTGCAAGCGCTCTGCAATTAGAGACCACCTTGTTCTGGTAAACT
TTAAATTCTGGAGACTGCGCATGCTTCAAACAAACCGCAAGGCCCCCAAT
TGTATGGTTATGAGGACCACCCTGTAAACCTGGGAAAACAGCATTGTTAA
TGGCAGATTCCAGTTCCACTCCAAGGACAGGATCTTTCTTGAAGAAGATC
ATGCCACCTCTTGGAACTCTCAAAGACTTGTGAGTTGTTGTTGTCACGAC
GTCACAGTACTTGA
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