CV885175

Overview
NameCV885175
Unique NameCV885175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYA_HALHL (Serine hydroxymethyltransferase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=glyA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.016e-43
Identity = 97/226 (42.92%), Postives = 132/226 (58.41%), Query Frame = -3
Query:  185 YCDVVTTTTHKSLRVPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 859
            + D VT+TTHK+LR PRGG+I  + +P    +LE    + VFPG QGGP  H I G AV  K A  P+FK YQ +VV+N RA+A R++E GY +VSGG+DNHL L+DL P  + G   +  L  A IT+NKN+VP D +S  V  G+RIG+PA+TTRGF E E   +AD+I + ++                        N    + V  +RG VE +  +FP+ G
Sbjct:  219 HADAVTSTTHKTLRGPRGGIILARSNP----DLEKKFQSLVFPGTQGGPLMHAIAGKAVAFKEALEPDFKQYQEQVVANARAMARRVIERGYNVVSGGTDNHLFLMDLTPKNLTGKDADAALGRANITVNKNTVPNDPQSPFVTSGLRIGTPAITTRGFKEAEATRLADWICDVLD------------------------NMGDESVVERVRGEVEQICREFPVYG 416          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYA_DESRM (Serine hydroxymethyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.016e-43
Identity = 92/182 (50.55%), Postives = 119/182 (65.38%), Query Frame = -3
Query:  317 YCDVVTTTTHKSLRVPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAK 859
            Y DVVTTTTHK+LR PRGGMI  K+      E    I+ A+FPG QGGP  H I   A     A  PEFK YQ ++++N +ALA  L+E G+ LVSGG+DNHL+LVDLR  GI G + E +LD  +IT NKN++P D +   V  GIR+G+PA+TTRGF EK+   +A+ I     +TL+ K
Sbjct:  218 YADVVTTTTHKTLRGPRGGMILCKE------EYAQLIDKAIFPGSQGGPLMHVIAAKAAAFGEALKPEFKAYQQQIINNAQALAKGLLERGFNLVSGGTDNHLILVDLRGTGITGKQAETLLDEVHITCNKNAIPFDPEKPFVTSGIRLGTPAVTTRGFKEKDMDKVAEII----ALTLQEK 389          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYA_DESAP (Serine hydroxymethyltransferase OS=Desulforudis audaxviator (strain MP104C) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.178e-42
Identity = 94/171 (54.97%), Postives = 114/171 (66.67%), Query Frame = -3
Query:  350 YCDVVTTTTHKSLRVPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 859
            Y DVVTTTTHK+LR PRGGMI   +      E  +AI+ AVFPG+QGGP  H I   AV L  AQ PEFK YQ ++V N RALA  L E G++LV+GG+D HL+LVDLR  G+ GA  E +LD   +T+NKN VP D +   V  GIRIG+PA+TTRG  E   V IA+ I
Sbjct:  219 YADVVTTTTHKTLRGPRGGMILCPE------EYAAAIDKAVFPGIQGGPLMHVIAAKAVALGEAQRPEFKTYQEQIVKNARALAQALQERGFELVAGGTDTHLILVDLRNKGLTGAVAEDLLDRVDVTVNKNMVPFDPQPPRVTSGIRIGTPAVTTRGMKEDSMVQIAEVI 383          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYA_PELTS (Serine hydroxymethyltransferase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.538e-42
Identity = 91/176 (51.70%), Postives = 117/176 (66.48%), Query Frame = -3
Query:  335 YCDVVTTTTHKSLRVPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 859
            Y DVVTTTTHK+LR PRGG+I  K     G +    IN AVFPG+QGGP  H I   AV  K A  P FK YQ K+VSN RALA  L+E G++LVSGG+DNHL+LVDLR   I G   +++ D   +T+NKN+VP D +   +  GIRIG+PA+T+RG +E + V IA+ +   +E
Sbjct:  219 YADVVTTTTHKTLRGPRGGLILCKDAERYGTK----INRAVFPGVQGGPLMHVIAAKAVAFKEAMEPGFKEYQRKIVSNARALADALLERGFELVSGGTDNHLILVDLRSKKITGREAQELFDAVGVTVNKNAVPFDPQPPNIASGIRIGTPAVTSRGLNEDDMVQIAEIMDYAIE 390          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYA_ALHEH (Serine hydroxymethyltransferase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.538e-42
Identity = 89/169 (52.66%), Postives = 116/169 (68.64%), Query Frame = -3
Query:  350 DVVTTTTHKSLRVPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 853
            DV TTTTHK+LR PRGG+I  + +     E+E  +N+ VFPG QGGP  H I G AV  K A  PEFK YQ +VV+N RA+A  L+E GYK+VSGG+DNHL L+DL   G+ G   +  L  A+IT+NKN+VP D +S  V  G+RIG+PA+TTRGF E+E   +A ++
Sbjct:  222 DVTTTTTHKTLRGPRGGLILARAN----AEVEKKLNSLVFPGTQGGPLMHAIAGKAVAFKEALEPEFKAYQQQVVANARAMAQGLIERGYKVVSGGTDNHLFLIDLVDKGLTGKAADAALGKAHITVNKNTVPNDPQSPFVTSGLRIGTPAITTRGFKEEECRELAGWM 386          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYA2_BORPA (Serine hydroxymethyltransferase 2 OS=Bordetella parapertussis GN=glyA2 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.623e-42
Identity = 96/226 (42.48%), Postives = 132/226 (58.41%), Query Frame = -3
Query:  185 YCDVVTTTTHKSLRVPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 859
            + D VT+TTHKSLR PRGG+I  K       E+E A+N+A+FPG+QGGP  H I   AV  K A SPEF+ Y  +VV N + LA  LV+ G ++VSG +++H++LVDLRP GI G   E +L  A+IT+NKN++P D +   V  GIR+G+PAMTTRGF E E    A+ I + ++   +                          N+A +R RV  LT + P+ G
Sbjct:  219 HADFVTSTTHKSLRGPRGGVIMMK------AEVEKAVNSAIFPGIQGGPLMHVIAAKAVAFKEALSPEFQDYAQQVVKNAKVLADTLVKRGLRIVSGRTESHVMLVDLRPKGITGKEAEAVLGQAHITVNKNAIPNDPEKPFVTSGIRLGTPAMTTRGFKEAEAELTANLIADVLDNPRDEA------------------------NIAAVRARVNELTARLPVYG 414          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYA_RHOFD (Serine hydroxymethyltransferase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=glyA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.426e-42
Identity = 97/226 (42.92%), Postives = 136/226 (60.18%), Query Frame = -3
Query:  185 YCDVVTTTTHKSLRVPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 859
            + DVVT+TTHKSLR PRGG+I  K       + E AIN+A+FPGLQGGP  H I   AV  K A  PEFKVYQ +V++N R +A  LV  G ++VSG +++H++LVDLR   I G   E +L  A++T+NKN++P D +  +V  G+RIG+PAMTTRGF ++E    A+ I + ++                      +P  S   N+  +R +V ALT +FP+ G
Sbjct:  219 HADVVTSTTHKSLRGPRGGIILMK------AQHEKAINSAIFPGLQGGPLMHVIAAKAVAFKEALQPEFKVYQQQVLTNARVVAETLVSRGLRIVSGRTESHVMLVDLRSKSITGKEAEAVLGSAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGFKDEEARITANLIADVLD----------------------NPRDSA--NIDAVRAKVNALTKRFPVYG 414          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYA_BORPE (Serine hydroxymethyltransferase OS=Bordetella pertussis GN=glyA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.426e-42
Identity = 96/226 (42.48%), Postives = 131/226 (57.96%), Query Frame = -3
Query:  185 YCDVVTTTTHKSLRVPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 859
            + D VT+TTHKSLR PRGG+I  K       E E A+N+A+FPG+QGGP  H I   AV  K A SPEF+ Y  +VV N + LA  LV+ G ++VSG +++H++LVDLRP GI G   E +L  A+IT+NKN++P D +   V  GIR+G+PAMTTRGF E E    A+ I + ++   +                          N+A +R RV  LT + P+ G
Sbjct:  219 HADFVTSTTHKSLRGPRGGVIMMK------AEFEKAVNSAIFPGIQGGPLMHVIAAKAVAFKEALSPEFQDYAQQVVKNAKVLADTLVKRGLRIVSGRTESHVMLVDLRPKGITGKEAEAVLGQAHITVNKNAIPNDPEKPFVTSGIRLGTPAMTTRGFKEAEAELTANLIADVLDNPRDEA------------------------NIAAVRARVNELTARLPVYG 414          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYA2_BORBR (Serine hydroxymethyltransferase 2 OS=Bordetella bronchiseptica GN=glyA2 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.426e-42
Identity = 96/226 (42.48%), Postives = 131/226 (57.96%), Query Frame = -3
Query:  185 YCDVVTTTTHKSLRVPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 859
            + D VT+TTHKSLR PRGG+I  K       E E A+N+A+FPG+QGGP  H I   AV  K A SPEF+ Y  +VV N + LA  LV+ G ++VSG +++H++LVDLRP GI G   E +L  A+IT+NKN++P D +   V  GIR+G+PAMTTRGF E E    A+ I + ++   +                          N+A +R RV  LT + P+ G
Sbjct:  219 HADFVTSTTHKSLRGPRGGVIMMK------AEFEKAVNSAIFPGIQGGPLMHVIAAKAVAFKEALSPEFQDYAQQVVKNAKVLADTLVKRGLRIVSGRTESHVMLVDLRPKGITGKEAEAVLGQAHITVNKNAIPNDPEKPFVTSGIRLGTPAMTTRGFKEAEAELTANLIADVLDNPRDEA------------------------NIAAVRARVNELTARLPVYG 414          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYA_PSEU5 (Serine hydroxymethyltransferase OS=Pseudomonas stutzeri (strain A1501) GN=glyA PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.475e-42
Identity = 97/226 (42.92%), Postives = 132/226 (58.41%), Query Frame = -3
Query:  185 YCDVVTTTTHKSLRVPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 859
            + DVVTTTTHK+LR PRGG+I  KK+     E+E  +N+AVFPG QGGP  H I   AVC K A  PEFK YQ +VV N +A+A   ++ G+ +VSGG+ NHL L+ L    I G   +  L  A+IT+NKNSVP D +S  V  G+RIG+PA+TTRGF E E   +A +I + ++                        N    + +  +RG+VEA+  +FP+ G
Sbjct:  219 FADVVTTTTHKTLRGPRGGLILAKKNE----EIEKKLNSAVFPGAQGGPLEHVIAAKAVCFKEALQPEFKAYQQQVVKNAQAMAEVFIQRGFDVVSGGTQNHLFLLSLIKQDITGKDADAALGRAHITVNKNSVPNDPRSPFVTSGLRIGTPAVTTRGFGEAECRELAGWICDILD------------------------NMGDESVIDAVRGKVEAVCAKFPVYG 416          
The following BLAST results are available for this feature:
BLAST of CV885175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_HALHL9.016e-4342.92Serine hydroxymethyltransferase OS=Halorhodospira ... [more]
GLYA_DESRM9.016e-4350.55Serine hydroxymethyltransferase OS=Desulfotomaculu... [more]
GLYA_DESAP1.178e-4254.97Serine hydroxymethyltransferase OS=Desulforudis au... [more]
GLYA_PELTS1.538e-4251.70Serine hydroxymethyltransferase OS=Pelotomaculum t... [more]
GLYA_ALHEH1.538e-4252.66Serine hydroxymethyltransferase OS=Alkalilimnicola... [more]
GLYA2_BORPA2.623e-4242.48Serine hydroxymethyltransferase 2 OS=Bordetella pa... [more]
GLYA_RHOFD3.426e-4242.92Serine hydroxymethyltransferase OS=Rhodoferax ferr... [more]
GLYA_BORPE3.426e-4242.48Serine hydroxymethyltransferase OS=Bordetella pert... [more]
GLYA2_BORBR3.426e-4242.48Serine hydroxymethyltransferase 2 OS=Bordetella br... [more]
GLYA_PSEU54.475e-4242.92Serine hydroxymethyltransferase OS=Pseudomonas stu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885175 ID=CV885175; Name=CV885175; organism=Citrus sinensis; type=EST; length=864bp
AAAGACCATTAGATAAAAATTTGGCCCTATAATTCATCATTTTCCATAAG
TAATTTAACCCCTATATTATAATAATTTAATTTTCCCCTGCAGTTCACAC
AAGCAAAAACATAGTGCCTGTCATTTTCCCCCATGAGAAAGCATCAAACG
GGTTTTAACCTGTAAAACAACTATACAATCATACTCCGGGGATGGGAAAC
TGGGTTGTGAGAGCTTCAACCCGACCACGAAGATCGGCGACATTATTCAT
CAACGAGAAATTGGGTGATGTGACAAAATTCATGAAGTCTTGGAGCTTTG
ATCCTTGAACCAACTTTTTAGCTTCCAGGGTTATTTCTACACCCTCGTGT
ATAAAGTCAGCAATTGCAACAAATTCTTTCTCAGAAAATCCTCTAGTTGT
CATTGCAGGTGAGCCAATGCGAATACCACCCGGCACTAGAGCACTCTTGT
CACCAGGCACTGAATTTTTGTTGAGAGTGATGTAGGCCATGTCAAGAATT
TTCTCTACCCGAGCCCCATCAATACCCATCGGCCTTAGATCTACAAGAAC
CAGGTGATTGTCGCTCCCTCCTGACACCAGCTTGTAACCTAATTCAACCA
ATCGGCTTGCAAGCGCTCTGCAATTAGAGACCACCTTGTTCTGGTAAACT
TTAAATTCTGGAGACTGCGCATGCTTCAAACAAACCGCAAGGCCCCCAAT
TGTATGGTTATGAGGACCACCCTGTAAACCTGGGAAAACAGCATTGTTAA
TGGCAGATTCCAGTTCCACTCCAAGGACAGGATCTTTCTTGAAGAAGATC
ATGCCACCTCTTGGAACTCTCAAAGACTTGTGAGTTGTTGTTGTCACGAC
GTCACAGTACTTGA
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