CV885174
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV885174 vs. ExPASy Swiss-Prot
Match: H2A1A_HUMAN (Histone H2A type 1-A OS=Homo sapiens GN=HIST1H2AA PE=1 SV=3) HSP 1 Score: 97.0561 bits (240), Expect = 8.330e-20 Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 3 Query: 192 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 368 +LELAGNA+RDNKK RIIPRH+ LA+RNDEEL KLL GVTIA GGVLPNI VLLPKK+ Sbjct: 63 ILELAGNASRDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121
BLAST of CV885174 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.421e-19 Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 3 Query: 192 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 365 VLELAGNAARDNK NRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLPKK Sbjct: 67 VLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 124
BLAST of CV885174 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.421e-19 Identity = 48/58 (82.76%), Postives = 51/58 (87.93%), Query Frame = 3 Query: 192 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 365 VLELAGNAARDNKKNRI+PRH+ LAVRNDEEL +LL VTIA GGVLPNI VLLPKK Sbjct: 66 VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK 123
BLAST of CV885174 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.421e-19 Identity = 48/58 (82.76%), Postives = 51/58 (87.93%), Query Frame = 3 Query: 192 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 365 VLELAGNAARDNKKNRI+PRH+ LAVRNDEEL +LL VTIA GGVLPNI VLLPKK Sbjct: 66 VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK 123
BLAST of CV885174 vs. ExPASy Swiss-Prot
Match: H2A_ASTRU (Histone H2A OS=Asterias rubens PE=1 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 1.856e-19 Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 3 Query: 192 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 368 +LELAGNAARDNKK RI PRH+ LA+RNDEEL KLL+GVTIA GGVLPNI VLLPKK+ Sbjct: 62 ILELAGNAARDNKKTRINPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
BLAST of CV885174 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.856e-19 Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 3 Query: 192 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 365 VLELAGNAARDNKKNRI+PRH+ LAVRNDEEL +LL VTIA GGVLPNI+ LLPKK Sbjct: 66 VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKK 123
BLAST of CV885174 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.856e-19 Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 3 Query: 192 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 365 VLELAGNAARDNKKNRI+PRH+ LAVRNDEEL +LL VTIA GGVLPNI+ LLPKK Sbjct: 66 VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKK 123
BLAST of CV885174 vs. ExPASy Swiss-Prot
Match: H2A3_LYTPI (Histone H2A, sperm (Fragment) OS=Lytechinus pictus PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.424e-19 Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 3 Query: 192 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 368 +LELAGNAA DNKK RIIPRH+ LA+RNDEEL KLL GVTIA GGVLPNI VLLPKK+ Sbjct: 49 ILELAGNAAPDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 107
BLAST of CV885174 vs. ExPASy Swiss-Prot
Match: H2A2_ARATH (Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.424e-19 Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 3 Query: 192 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 368 VLELAGNAARDNKK RI+PRH+ LAVRNDEEL KLL VTIA+GGV+PNI+ +LLPKK+ Sbjct: 64 VLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKA 122
BLAST of CV885174 vs. ExPASy Swiss-Prot
Match: H2A_CAIMO (Histone H2A OS=Cairina moschata PE=3 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 3.165e-19 Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 3 Query: 192 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 368 +LELAGNAARDNKK RIIPRH+ LA+RNDEEL KLL VTIA GGVLPNI VLLPKK+ Sbjct: 63 ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121 The following BLAST results are available for this feature:
BLAST of CV885174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 183
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885174 ID=CV885174; Name=CV885174; organism=Citrus sinensis; type=EST; length=640bpback to top |