CV885174

Overview
NameCV885174
Unique NameCV885174
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885174 vs. ExPASy Swiss-Prot
Match: H2A1A_HUMAN (Histone H2A type 1-A OS=Homo sapiens GN=HIST1H2AA PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 8.330e-20
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 3
Query:  192 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 368
            +LELAGNA+RDNKK RIIPRH+ LA+RNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   63 ILELAGNASRDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of CV885174 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.421e-19
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 3
Query:  192 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 365
            VLELAGNAARDNK NRI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLPKK
Sbjct:   67 VLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 124          
BLAST of CV885174 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.421e-19
Identity = 48/58 (82.76%), Postives = 51/58 (87.93%), Query Frame = 3
Query:  192 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 365
            VLELAGNAARDNKKNRI+PRH+ LAVRNDEEL +LL  VTIA GGVLPNI  VLLPKK
Sbjct:   66 VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK 123          
BLAST of CV885174 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.421e-19
Identity = 48/58 (82.76%), Postives = 51/58 (87.93%), Query Frame = 3
Query:  192 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 365
            VLELAGNAARDNKKNRI+PRH+ LAVRNDEEL +LL  VTIA GGVLPNI  VLLPKK
Sbjct:   66 VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK 123          
BLAST of CV885174 vs. ExPASy Swiss-Prot
Match: H2A_ASTRU (Histone H2A OS=Asterias rubens PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.856e-19
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 3
Query:  192 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 368
            +LELAGNAARDNKK RI PRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   62 ILELAGNAARDNKKTRINPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CV885174 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.856e-19
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 3
Query:  192 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 365
            VLELAGNAARDNKKNRI+PRH+ LAVRNDEEL +LL  VTIA GGVLPNI+  LLPKK
Sbjct:   66 VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKK 123          
BLAST of CV885174 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.856e-19
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 3
Query:  192 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 365
            VLELAGNAARDNKKNRI+PRH+ LAVRNDEEL +LL  VTIA GGVLPNI+  LLPKK
Sbjct:   66 VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKK 123          
BLAST of CV885174 vs. ExPASy Swiss-Prot
Match: H2A3_LYTPI (Histone H2A, sperm (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.424e-19
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 3
Query:  192 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 368
            +LELAGNAA DNKK RIIPRH+ LA+RNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   49 ILELAGNAAPDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 107          
BLAST of CV885174 vs. ExPASy Swiss-Prot
Match: H2A2_ARATH (Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.424e-19
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 3
Query:  192 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 368
            VLELAGNAARDNKK RI+PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKK+
Sbjct:   64 VLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKA 122          
BLAST of CV885174 vs. ExPASy Swiss-Prot
Match: H2A_CAIMO (Histone H2A OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.165e-19
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 3
Query:  192 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 368
            +LELAGNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPKK+
Sbjct:   63 ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121          
The following BLAST results are available for this feature:
BLAST of CV885174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 183
Match NameE-valueIdentityDescription
H2A1A_HUMAN8.330e-2079.66Histone H2A type 1-A OS=Homo sapiens GN=HIST1H2AA ... [more]
H2AX_CICAR1.421e-1981.03Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1[more]
H2AXA_ORYSJ1.421e-1982.76Probable histone H2AXa OS=Oryza sativa subsp. japo... [more]
H2AXA_ORYSI1.421e-1982.76Probable histone H2AXa OS=Oryza sativa subsp. indi... [more]
H2A_ASTRU1.856e-1979.66Histone H2A OS=Asterias rubens PE=1 SV=2[more]
H2AXB_ORYSJ1.856e-1981.03Probable histone H2AXb OS=Oryza sativa subsp. japo... [more]
H2AXB_ORYSI1.856e-1981.03Probable histone H2AXb OS=Oryza sativa subsp. indi... [more]
H2A3_LYTPI2.424e-1979.66Histone H2A, sperm (Fragment) OS=Lytechinus pictus... [more]
H2A2_ARATH2.424e-1977.97Probable histone H2A.2 OS=Arabidopsis thaliana GN=... [more]
H2A_CAIMO3.165e-1979.66Histone H2A OS=Cairina moschata PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B01_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885174 ID=CV885174; Name=CV885174; organism=Citrus sinensis; type=EST; length=640bp
TCAACGCATCCAATTATATTTAGTAACCCCAGCTTGTATCAAAATTCATA
AAATTGCTTTTGAATTTGAACCAAATAATGATTAATACCGTGTCTTTTCT
CTGACGTTGCTTCTCTGTAGATGGGAAGAACTATGGTTCATAATTGTGTG
ATTTATTTGGTAATAATTTGTTGGGCTGAATCTGTGTTTAGGTTCTTGAG
TTGGCTGGTAATGCAGCGAGGGACAACAAGAAGAATAGGATCATCCCAAG
GCATGTTCTGTTGGCTGTAAGAAATGATGAGGAGCTTGGGAAGCTTCTTG
CTGGTGTGACAATTGCTCACGGTGGAGTCTTGCCAAACATCAACCCAGTT
CTTCTGCCGAAAAAATCTGAGAAGGCAGCAACGAAAGAGCCGAAGTCTCC
AGCCAAGGCCACTAAGTCCCCAAAGAAGGCTTAGTTTTTAGTCTTCTCAT
CTTTAACTGTGTGTATGTTACTTCTTTGATGTATTCGGCTTGTAGGAAAG
CTTCATGCTCGTAGGATTTAGGGACCATTCTACTGTTTTTAATTGTCCGT
CACTGTGTAGAACTTCTTTTGCTTCGACTGTAGAATGAATGAAATCGTGG
TACTTGTTCCGATATTTCATTTGTTGCAGAAGGTAATCCT
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