CV885173

Overview
NameCV885173
Unique NameCV885173
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A4_ARATH (Probable histone H2A.4 OS=Arabidopsis thaliana GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.944e-25
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = -3
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPNINP+LLPKKS
Sbjct:   72 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKS 130          
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.526e-24
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = -3
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAARDNKK RIIPRHVLLA+RNDEELGKLL GVTIAHGGVLPNINPVLLPKK+
Sbjct:   76 VLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLLPKKT 134          
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A1_SOLLC (Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.526e-24
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = -3
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAARDNKK+RIIPRHVLLAVRNDEELGKLLAGVTIA GGVLPNINPVLLPKKS
Sbjct:   69 VLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLPKKS 127          
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A_PETCR (Histone H2A OS=Petroselinum crispum PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.602e-24
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = -3
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAARDNKK RIIPRH+LLAVRNDEELGKLLAGVT AHGGVLPNINPVLLPKK+
Sbjct:   70 VLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNINPVLLPKKT 128          
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A7_ARATH (Probable histone H2A.7 OS=Arabidopsis thaliana GN=At5g59870 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.572e-24
Identity = 54/59 (91.53%), Postives = 58/59 (98.31%), Query Frame = -3
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAARDNKK+RIIPRH+LLA+RNDEELGKLL+GVTIAHGGVLPNIN VLLPKKS
Sbjct:   72 VLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKKS 130          
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A1_PEA (Histone H2A.1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.292e-23
Identity = 54/58 (93.10%), Postives = 57/58 (98.28%), Query Frame = -3
Query:  273 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 446
            VLELAGNAARDNKKNRI PRH+LLAVRNDEELGKLLAGVTIA+GGVLPNINPVLLPK+
Sbjct:   71 VLELAGNAARDNKKNRISPRHLLLAVRNDEELGKLLAGVTIAYGGVLPNINPVLLPKR 128          
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A3_WHEAT (Histone H2A.2.2 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.687e-23
Identity = 51/59 (86.44%), Postives = 59/59 (100.00%), Query Frame = -3
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAA+DNKK+RI+PRH+LLAVRND+ELG+LLAGVTIAHGGV+PNINPVLLPKK+
Sbjct:   69 VLELAGNAAKDNKKSRIVPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINPVLLPKKA 127          
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A5_WHEAT (Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 6.410e-23
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = -3
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAA+DNKK RIIPRH+LLAVRND+ELG+LLAGVTIAHGGV+PNIN VLLPKKS
Sbjct:   60 VLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKKS 118          
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A2_WHEAT (Histone H2A.2.1 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.410e-23
Identity = 49/59 (83.05%), Postives = 58/59 (98.31%), Query Frame = -3
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAA+DNKK RI+PRH+LLA+RND+ELG+LL+GVTIAHGGV+PNINPVLLPKK+
Sbjct:   69 VLELAGNAAKDNKKTRIVPRHLLLAIRNDQELGRLLSGVTIAHGGVIPNINPVLLPKKA 127          
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A2_PEA (Histone H2A.2 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.410e-23
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = -3
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAARDNKKNRI PRH+LLAVRND ELGKLLAGVTIA+GGVLPNINPVLLPK++
Sbjct:   71 VLELAGNAARDNKKNRISPRHLLLAVRNDVELGKLLAGVTIAYGGVLPNINPVLLPKRT 129          
The following BLAST results are available for this feature:
BLAST of CV885173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 183
Match NameE-valueIdentityDescription
H2A4_ARATH8.944e-2594.92Probable histone H2A.4 OS=Arabidopsis thaliana GN=... [more]
H2A_MAIZE1.526e-2493.22Histone H2A OS=Zea mays PE=2 SV=1[more]
H2A1_SOLLC1.526e-2496.61Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1[more]
H2A_PETCR2.602e-2493.22Histone H2A OS=Petroselinum crispum PE=2 SV=1[more]
H2A7_ARATH7.572e-2491.53Probable histone H2A.7 OS=Arabidopsis thaliana GN=... [more]
H2A1_PEA1.292e-2393.10Histone H2A.1 OS=Pisum sativum PE=2 SV=1[more]
H2A3_WHEAT1.687e-2386.44Histone H2A.2.2 OS=Triticum aestivum PE=1 SV=1[more]
H2A5_WHEAT6.410e-2388.14Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 S... [more]
H2A2_WHEAT6.410e-2383.05Histone H2A.2.1 OS=Triticum aestivum PE=1 SV=1[more]
H2A2_PEA6.410e-2389.83Histone H2A.2 OS=Pisum sativum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B01_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885173 ID=CV885173; Name=CV885173; organism=Citrus sinensis; type=EST; length=652bp
ATTACCTTCTGCAACAAATGAAATATCGGAACAAGTACCACGATTTCATT
CATTCTACAGTCGAAGCAAAAGAAGTTCTACACAGTGACGGACAATTAAA
AACAGTAGAATGGTCCCTAAATCCTACGAGCATGAAGCTTTCCTACAAGC
CGAATACATCAAAGAAGTAACATACACACAGTTAAAGATGAGAAGACTAA
AAACTAAGCCTTCTTTGGGGACTTAGTGGCCTTGGCTGGAGACTTCGGCT
CTTTCGTTGCTGCCTTCTCAGATTTTTTCGGCAGAAGAACTGGGTTGATG
TTTGGCAAGACTCCACCGTGAGCAATTGTCACACCAGCAAGAAGCTTCCC
AAGCTCCTCATCATTTCTTACAGCCAACAGAACATGCCTTGGGATGATCC
TATTCTTCTTGTTGTCCCTCGCTGCATTACCAGCCAACTCAAGAACCTAA
ACACAGATTCAGCCCAACAAATTATTACCAAATAAATCACACAATTATGA
ACCATAGTTCTTCCCATCTACAGAGAAGCAACGTCAGAGAAAAGACACGG
TATTAATCATTATTTGGTTCAAATTCAAAAGCAATTTTATGAATTTTGAT
ACAAGCTGGGGTTACTAAATATAATTTGGATGCTGTTTGACATTCGTAAA
AA
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