CV885173

Overview
NameCV885173
Unique NameCV885173
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A1_WHEAT (Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 6.410e-23
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAA+DNKK RIIPRH+LLAVRND+ELG+LLAGVTIAHGGV+PNIN VLLPKKS
Sbjct:   60 VLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKKS 118
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A6_WHEAT (Protein H2A.6 OS=Triticum aestivum GN=H2A-3 PE=2 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.428e-22
Identity = 51/59 (86.44%), Postives = 57/59 (96.61%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAA+DNKK RIIPRH+LLAVRND+ELG+LLAGVTIAHGGV+PNIN VLLPKK+
Sbjct:   60 VLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKKA 118
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A5_ARATH (Probable histone H2A.5 OS=Arabidopsis thaliana GN=At5g27670 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.181e-22
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAARDNKKNRI PRH+ LA+RNDEELG+LL GVTIA GGVLPNINPVLLPKKS
Sbjct:   73 VLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKKS 131
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.693e-21
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAARDNKKNRI+PRH+ LA+RNDEELGKLL  VTIA GGVLPNI+ VLLPKKS
Sbjct:   62 VLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKS 120
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A3_VOLCA (Histone H2A-III OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.693e-21
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAARDNKKNRI+PRH+ LA+RNDEELGKLL  VTIA GGVLPNI+ VLLPKKS
Sbjct:   62 VLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKS 120
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.594e-21
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAARDNKKNRI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+ VLLPKKS
Sbjct:   66 VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKS 124
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.836e-21
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAARDNKKNRI+PRH+ LA+RNDEELGKLL  VTIA GGVLPNI+ VLLPKK+
Sbjct:   62 VLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKT 120
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A_ACRFO (Histone H2A OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 7.836e-21
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            +LELAGNAARDNKK+RIIPRH+ LAVRNDEEL KLLAGVTIA GGVLPNI  VLLPKK+
Sbjct:   62 ILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A_URECA (Histone H2A OS=Urechis caupo PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.023e-20
Identity = 50/59 (84.75%), Postives = 53/59 (89.83%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKKS
Sbjct:   62 VLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKS 120
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2AX_XENLA (Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.023e-20
Identity = 50/59 (84.75%), Postives = 53/59 (89.83%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            +LELAGNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKKS
Sbjct:   63 ILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKS 121
The following BLAST results are available for this feature:
BLAST of CV885173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 183
Match NameE-valueIdentityDescription
H2A1_WHEAT6.410e-2388.14Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 S... [more]
H2A6_WHEAT1.428e-2286.44Protein H2A.6 OS=Triticum aestivum GN=H2A-3 PE=2 S... [more]
H2A5_ARATH3.181e-2288.14Probable histone H2A.5 OS=Arabidopsis thaliana GN=... [more]
H2A4_VOLCA2.693e-2184.75Histone H2A-IV OS=Volvox carteri PE=3 SV=1[more]
H2A3_VOLCA2.693e-2184.75Histone H2A-III OS=Volvox carteri PE=3 SV=1[more]
H2AX_PICAB4.594e-2184.75Histone H2AX OS=Picea abies PE=2 SV=1[more]
H2A_CHLRE7.836e-2183.05Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II... [more]
H2A_ACRFO7.836e-2184.75Histone H2A OS=Acropora formosa PE=3 SV=2[more]
H2A_URECA1.023e-2084.75Histone H2A OS=Urechis caupo PE=3 SV=2[more]
H2AX_XENLA1.023e-2084.75Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B01_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885173 ID=CV885173; Name=CV885173; organism=Citrus sinensis; type=EST; length=652bp
ATTACCTTCTGCAACAAATGAAATATCGGAACAAGTACCACGATTTCATT
CATTCTACAGTCGAAGCAAAAGAAGTTCTACACAGTGACGGACAATTAAA
AACAGTAGAATGGTCCCTAAATCCTACGAGCATGAAGCTTTCCTACAAGC
CGAATACATCAAAGAAGTAACATACACACAGTTAAAGATGAGAAGACTAA
AAACTAAGCCTTCTTTGGGGACTTAGTGGCCTTGGCTGGAGACTTCGGCT
CTTTCGTTGCTGCCTTCTCAGATTTTTTCGGCAGAAGAACTGGGTTGATG
TTTGGCAAGACTCCACCGTGAGCAATTGTCACACCAGCAAGAAGCTTCCC
AAGCTCCTCATCATTTCTTACAGCCAACAGAACATGCCTTGGGATGATCC
TATTCTTCTTGTTGTCCCTCGCTGCATTACCAGCCAACTCAAGAACCTAA
ACACAGATTCAGCCCAACAAATTATTACCAAATAAATCACACAATTATGA
ACCATAGTTCTTCCCATCTACAGAGAAGCAACGTCAGAGAAAAGACACGG
TATTAATCATTATTTGGTTCAAATTCAAAAGCAATTTTATGAATTTTGAT
ACAAGCTGGGGTTACTAAATATAATTTGGATGCTGTTTGACATTCGTAAA
AA
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