CV885173

Overview
NameCV885173
Unique NameCV885173
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A_DROER (Histone H2A OS=Drosophila erecta GN=His2A PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.280e-20
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   62 VLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A_CHITH (Histone H2A OS=Chironomus thummi thummi PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.280e-20
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   62 VLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2AL_STRPU (Late histone H2A.L3 OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.280e-20
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            +LELAGNAARDNKK RIIPRH+ LAVRNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   63 ILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2AE_PSAMI (Histone H2A, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.280e-20
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            +LELAGNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   62 ILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A2_PSAMI (Late histone H2A.2.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.280e-20
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            +LELAGNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   62 ILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQTVLLPKKT 120
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A1_TETTH (Histone H2A.1 OS=Tetrahymena thermophila GN=HTA2 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.280e-20
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAA+DNKK RI+PRH+LLA+RNDEEL KL+A  TIA GGVLPNINP+LLP K+
Sbjct:   67 VLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKT 125
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A1_TETPY (Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.280e-20
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAA+DNKK RI+PRH+LLA+RNDEEL KL+A  TIA GGVLPNINP+LLP K+
Sbjct:   67 VLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKT 125
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A1_PSAMI (Late histone H2A.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.280e-20
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            +LELAGNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   62 ILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A_ONCMY (Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.977e-20
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            +LELAGNAARDNKK RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   63 ILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A_LITVA (Histone H2A OS=Litopenaeus vannamei PE=1 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 2.977e-20
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAARDNKK RI+PRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   62 VLELAGNAARDNKKTRIVPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
The following BLAST results are available for this feature:
BLAST of CV885173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 183
Match NameE-valueIdentityDescription
H2A_DROER2.280e-2083.05Histone H2A OS=Drosophila erecta GN=His2A PE=3 SV=... [more]
H2A_CHITH2.280e-2083.05Histone H2A OS=Chironomus thummi thummi PE=3 SV=2[more]
H2AL_STRPU2.280e-2083.05Late histone H2A.L3 OS=Strongylocentrotus purpurat... [more]
H2AE_PSAMI2.280e-2083.05Histone H2A, embryonic OS=Psammechinus miliaris PE... [more]
H2A2_PSAMI2.280e-2083.05Late histone H2A.2.1 OS=Psammechinus miliaris PE=2... [more]
H2A1_TETTH2.280e-2077.97Histone H2A.1 OS=Tetrahymena thermophila GN=HTA2 P... [more]
H2A1_TETPY2.280e-2077.97Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE... [more]
H2A1_PSAMI2.280e-2083.05Late histone H2A.1 OS=Psammechinus miliaris PE=2 S... [more]
H2A_ONCMY2.977e-2083.05Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2[more]
H2A_LITVA2.977e-2081.36Histone H2A OS=Litopenaeus vannamei PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B01_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885173 ID=CV885173; Name=CV885173; organism=Citrus sinensis; type=EST; length=652bp
ATTACCTTCTGCAACAAATGAAATATCGGAACAAGTACCACGATTTCATT
CATTCTACAGTCGAAGCAAAAGAAGTTCTACACAGTGACGGACAATTAAA
AACAGTAGAATGGTCCCTAAATCCTACGAGCATGAAGCTTTCCTACAAGC
CGAATACATCAAAGAAGTAACATACACACAGTTAAAGATGAGAAGACTAA
AAACTAAGCCTTCTTTGGGGACTTAGTGGCCTTGGCTGGAGACTTCGGCT
CTTTCGTTGCTGCCTTCTCAGATTTTTTCGGCAGAAGAACTGGGTTGATG
TTTGGCAAGACTCCACCGTGAGCAATTGTCACACCAGCAAGAAGCTTCCC
AAGCTCCTCATCATTTCTTACAGCCAACAGAACATGCCTTGGGATGATCC
TATTCTTCTTGTTGTCCCTCGCTGCATTACCAGCCAACTCAAGAACCTAA
ACACAGATTCAGCCCAACAAATTATTACCAAATAAATCACACAATTATGA
ACCATAGTTCTTCCCATCTACAGAGAAGCAACGTCAGAGAAAAGACACGG
TATTAATCATTATTTGGTTCAAATTCAAAAGCAATTTTATGAATTTTGAT
ACAAGCTGGGGTTACTAAATATAATTTGGATGCTGTTTGACATTCGTAAA
AA
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