CV885173

Overview
NameCV885173
Unique NameCV885173
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A_CAEEL (Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.977e-20
Identity = 50/59 (84.75%), Postives = 52/59 (88.14%), Query Frame = -3
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAARDNKK RI PRH+ LAVRNDEEL KLLAGVTIA GGVLPNI  VLLPKK+
Sbjct:   64 VLELAGNAARDNKKTRIAPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKT 122          
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2AX_DANRE (Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 2.977e-20
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = -3
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            +LELAGNAARDNKK RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   63 ILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2AO_CHITH (Histone H2A, orphon OS=Chironomus thummi thummi PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.977e-20
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = -3
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            +LELAGNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   62 ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A4_PSAMI (Late histone H2A.2.2 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.977e-20
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = -3
Query:  273 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 446
            +LELAGNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK
Sbjct:   62 ILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 119          
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A2B_MOUSE (Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab PE=1 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 2.977e-20
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = -3
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            +LELAGNAARDNKK RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   63 ILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A2B_HUMAN (Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB PE=1 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 2.977e-20
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = -3
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            +LELAGNAARDNKK RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   63 ILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A1_XENLA (Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.977e-20
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = -3
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            +LELAGNAARDNKK RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   63 ILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKT 121          
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A_PARAN (Histone H2A, gonadal OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.889e-20
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = -3
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            +LELAGNAARDNKK RIIPRH+ LA+RNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   62 ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2AX_HUMAN (Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.889e-20
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = -3
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            +LELAGNAARDNKK RIIPRH+ LA+RNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   63 ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A3_PSAMI (Late histone H2A.3, gonadal OS=Psammechinus miliaris PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.889e-20
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = -3
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            +LELAGNAARDNKK RIIPRH+ LA+RNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   62 ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120          
The following BLAST results are available for this feature:
BLAST of CV885173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 183
Match NameE-valueIdentityDescription
H2A_CAEEL2.977e-2084.75Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=... [more]
H2AX_DANRE2.977e-2083.05Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3[more]
H2AO_CHITH2.977e-2081.36Histone H2A, orphon OS=Chironomus thummi thummi PE... [more]
H2A4_PSAMI2.977e-2084.48Late histone H2A.2.2 OS=Psammechinus miliaris PE=3... [more]
H2A2B_MOUSE2.977e-2083.05Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab ... [more]
H2A2B_HUMAN2.977e-2083.05Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB ... [more]
H2A1_XENLA2.977e-2083.05Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2[more]
H2A_PARAN3.889e-2081.36Histone H2A, gonadal OS=Parechinus angulosus PE=1 ... [more]
H2AX_HUMAN3.889e-2081.36Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2[more]
H2A3_PSAMI3.889e-2081.36Late histone H2A.3, gonadal OS=Psammechinus miliar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B01_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885173 ID=CV885173; Name=CV885173; organism=Citrus sinensis; type=EST; length=652bp
ATTACCTTCTGCAACAAATGAAATATCGGAACAAGTACCACGATTTCATT
CATTCTACAGTCGAAGCAAAAGAAGTTCTACACAGTGACGGACAATTAAA
AACAGTAGAATGGTCCCTAAATCCTACGAGCATGAAGCTTTCCTACAAGC
CGAATACATCAAAGAAGTAACATACACACAGTTAAAGATGAGAAGACTAA
AAACTAAGCCTTCTTTGGGGACTTAGTGGCCTTGGCTGGAGACTTCGGCT
CTTTCGTTGCTGCCTTCTCAGATTTTTTCGGCAGAAGAACTGGGTTGATG
TTTGGCAAGACTCCACCGTGAGCAATTGTCACACCAGCAAGAAGCTTCCC
AAGCTCCTCATCATTTCTTACAGCCAACAGAACATGCCTTGGGATGATCC
TATTCTTCTTGTTGTCCCTCGCTGCATTACCAGCCAACTCAAGAACCTAA
ACACAGATTCAGCCCAACAAATTATTACCAAATAAATCACACAATTATGA
ACCATAGTTCTTCCCATCTACAGAGAAGCAACGTCAGAGAAAAGACACGG
TATTAATCATTATTTGGTTCAAATTCAAAAGCAATTTTATGAATTTTGAT
ACAAGCTGGGGTTACTAAATATAATTTGGATGCTGTTTGACATTCGTAAA
AA
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