EY665372

Overview
NameEY665372
Unique NameEY665372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1046
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY665372 vs. ExPASy Swiss-Prot
Match: GRRA_EMENI (SCF E3 ubiquitin ligase complex F-box protein grrA OS=Emericella nidulans GN=grrA PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.098e-11
Identity = 41/154 (26.62%), Postives = 80/154 (51.95%), Query Frame = 1 
Query:   73 SPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLHGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIAYNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLPILSLSSCSMVSNKSF 534
            S C  +  L++ NC    D  ++ L      LQ +D+S L  +TD     V E+C   L  +N++GCV +TD  +  +++ +   L+ L L+G  +++D ++++ A NCP + ++D+ +C +      +       NL  L L+ C+ + + +F
Sbjct:  159 SQCNRIERLTLTNCRKLTDIGVSDLVVGSRHLQALDVSELRSLTDHTLFKVAENCNR-LQGLNITGCVKVTDDSLIAVSQ-NCRLLKRLKLNGVSQVTDKAILSFAQNCPSILEIDLQECKLVTNQSVTALMTTLQNLRELRLAHCTEIDDSAF 310
[Close]
BLAST of EY665372 vs. ExPASy Swiss-Prot
Match: AMN1_PONAB (Protein AMN1 homolog OS=Pongo abelii GN=AMN1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.448e-11
Identity = 48/132 (36.36%), Postives = 73/132 (55.30%), Query Frame = 1 
Query:   88 LRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLHG----VTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIAYNCPLLCDLDVSKCAVTDFGIASLAHG 471
            +++L +R+C    DA+L  L   C +L+ ++L+   G    VT  G   V  SC   L + +L  C NLTD+ V  +A L+   L+++NL GC  I+D SL A+  NCP L  +D S   V+D G+ +L  G
Sbjct:   63 VQTLDLRSCD-ISDAALLHLSN-CRKLKKLNLNASKGNRVSVTSEGIKVVASSCSY-LHEASLKRCCNLTDEGVVALA-LNCQLLKIINLGGCLSITDVSLHALGKNCPFLQCVDFSATQVSDSGVIALVSG 190
The following BLAST results are available for this feature:
BLAST of EY665372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
GRRA_EMENI1.098e-1126.62SCF E3 ubiquitin ligase complex F-box protein grrA... [more]
AMN1_PONAB5.448e-1136.36Protein AMN1 homolog OS=Pongo abelii GN=AMN1 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-B06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665372 ID=EY665372; Name=EY665372; organism=Citrus sinensis; type=EST; length=1046bp
GGCGGGGCGCAGTACGGTCCGGATTCCGGGTCGACCACGCGTCCGGGATC
AAATCTGGGTGTCCGTTCACTGTCTCCCTGCAAATCCTTGCGATCATTGT
CCATCCGTAACTGTCCTGGATTTGGTGACGCAAGCCTGGCTGTGTTGGGG
AAATTGTGCCCTCAGTTGCAGAATGTTGATTTGAGTGGGCTTCACGGTGT
AACAGATGCTGGGTTTTTACCAGTGCTTGAGAGTTGTGAGGCTGGTCTTG
CAAAGGTTAATCTCAGTGGTTGTGTGAATTTGACTGACAAAGTTGTTTCA
ACGATGGCTGAATTGCATGGTTGGACTCTAGAAATGTTGAATCTCGATGG
TTGTAGGAAGATCAGTGATGCAAGCTTGATGGCAATTGCATACAACTGCC
CTTTGCTGTGTGATCTCGATGTCTCTAAGTGTGCTGTCACTGATTTTGGT
ATTGCATCCCTAGCTCATGGAAACTATCTCAATCTGCCGATTCTTTCGCT
GTCCAGTTGCTCAATGGTTTCAAACAAAAGCTTTGGTGCCCTAAAAAAGT
TGGGTAAGAACCCTTCTGGGTTTGAACCTTCCAGCACTGCCATGGCAACA
TTCCCCAAATCCTGTTGAACTTGCTTTGGGGAAACAATTATGGGAAGGGT
TGATTGCCCTCCCCAAAGCCCGGCAAACCTTTCAAAAAAAACCCCATTTC
CATAAATTTTTAACCATTGAAAACAAGGGGGGGGGGGGAGAAAATTTTTA
GGGGAGGTTCCCAAAAATTTTTCCTCTCCACCTTCCTTTTGTTTTAAGCC
ACCGCCGTTTTTGTTTTTTTTTTTGTGGGGGACGCACGGGGAAAGGGGGC
CTCTTCAATCCTTACAGGGGGGCCCGGGTTATTTTTTTTTTCCCCGGGGG
GAAAATTGTGGGCCCCCCCCCCCTTTTTTTTTTTTGGGGGGGTTTCCCCA
AAAAGAAAAGAAAAAAAACACTCGTGTTTTAAAACACTTTTTTTTTTTAA
TATCACCCCCACAAAAATAACAAGGGGGGGGGTGGGTATGTGCCTC
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