CV885170

Overview
NameCV885170
Unique NameCV885170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: THIC_RAT (Acetyl-CoA acetyltransferase, cytosolic OS=Rattus norvegicus GN=Acat2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.285e-18
Identity = 77/248 (31.05%), Postives = 121/248 (48.79%), Query Frame = 3
Query:  222 AFDDDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT-------VNSISVVGQVNPKVEIFTQA-RDCL--LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            A  D VVI++A RTAI  +  G        +L   V+K V+++ ++ P EV +++ G VL  G  +    R A+  AG P +VP  +    C SGL+AV   A +I  G   I +A G+E+M+       + S   +G+V     I      D      MGIT+ENVA+++ V+R+ QD                G F  EI+PV+   V  + G+ +   + +D+  R  + +  ++KLKP F  DG
Sbjct:    3 AGSDPVVIISAARTAI-GSFNGALSTVPVHNLGTTVIKEVLQRAKVAPEEVSEVIFGHVLTAGCGQN-PTRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQSIAMGDSTIVVAGGMENMSKAPHLAHLRSGVKMGEVPLADSILCDGLTDAFHNYHMGITAENVAKKWQVSREAQDKVAVVSQNRAEHAQKAGHFDKEIVPVH---VSSRKGLTE---VKIDEFPRHGSNLEAMSKLKPYFLTDG 242          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: PCAF_PSEAE (Beta-ketoadipyl-CoA thiolase OS=Pseudomonas aeruginosa GN=pcaF PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.984e-18
Identity = 76/245 (31.02%), Postives = 118/245 (48.16%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVN------PKVEIFT----------QARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKP 917
            +V I  A RT I +   G      ADDL A  LKA++E+   ++ S + ++ +G     G       RMA   AG PE+VP  T+NR C+SG+ A+     AI  G  ++ IA G+ESM+  +  V+G+ +       K+E  T          + +  + PM  T++NVA  + V+R +QD                G F +EI+PV  +      G +    +  D+  RP+TT+  LA+LKP
Sbjct:    4 EVFICDAVRTPIGRFG-GSLSAVRADDLAAVPLKALVERNPGVDWSALDEVFLGCANQAGEDNRNVARMALLLAGLPESVPGVTLNRLCASGMDAIGTAFRAIACGEMELAIAGGVESMS-RAPYVMGKADSAFGRGQKIEDTTIGWRFVNPLMKEQYGIDPMPQTADNVADDYRVSRADQDAFALRSQQRAGRAQEAGFFAEEIVPVTIR------GRKGDTLVEHDEHPRPDTTLEALARLKP 240          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: PAAJ_ECOLX (Beta-ketoadipyl-CoA thiolase OS=Escherichia coli GN=paaJ PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.897e-18
Identity = 71/234 (30.34%), Postives = 107/234 (45.73%), Query Frame = 3
Query:  285 GGFKDTLADDLLA-PVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLL----------------PMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            G      ADDL A P+ + ++   RL+   + D+++G     G       RMA   AG P++V   T+NR C SGL A+   A AIKAG  D+ IA G+ESM+  +  V+G+         +  D  +                 M  T+ENVA+   ++R++QD                G   +EI+PV   ++  K GV     I  D+ +RP TT+  L  LK  F+ +G
Sbjct:   19 GALSGVRADDLAAIPLRELLVRNPRLDAECIDDVILGCANQAGEDNRNVARMATLLAGLPQSVSGTTINRLCGSGLDALGFAARAIKAGDGDLLIAGGVESMS-RAPFVMGKATSAFSRQAEMFDTTIGWRFVNPLMAQQFGTDSMPETAENVAELLKISREDQDSFALRSQQRTAKAQSSGILAEEIVPV---VLKNKKGVV--TEIQHDEHLRPETTLEQLRGLKAPFRANG 246          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: THIM_BOVIN (3-ketoacyl-CoA thiolase, mitochondrial OS=Bos taurus GN=ACAA2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.090e-18
Identity = 72/244 (29.51%), Postives = 110/244 (45.08%), Query Frame = 3
Query:  237 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT-----VNSISVVGQVNPKVE----IFTQARD--CLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            V IVAA RT    A  G  KD    D+     +A +   R++P  V  +VVG V+   S      R      G P+  P  T+NR C SG Q++      I +   ++ +  G ESM+     V +I    ++  +++    ++T   D    +PM IT+EN+A +  ++R++ D                G F +E+ PV  K    K       T+ VD+  RP TT+  L KL P FKK+G
Sbjct:    7 VFIVAAKRTPF-GAYGGLLKDFTPTDMAEFAARAALSAGRVSPETVDSVVVGNVMQSSSDAIYLARHVGLRVGIPKETPAITINRLCGSGFQSIVSGCQEICSRDSEVVLCGGTESMSQAPYCVRNIRFGTKLGSELKLEDTLWTGLTDTHVQMPMAITAENLAVKHQISREDCDRYALQSQQRWKTANDAGYFDNEMAPVEVKTRKGKQ------TMQVDEHPRPQTTMEQLNKLPPVFKKEG 243          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: PAAJ_ECOLI (Beta-ketoadipyl-CoA thiolase OS=Escherichia coli (strain K12) GN=paaJ PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.090e-18
Identity = 71/234 (30.34%), Postives = 107/234 (45.73%), Query Frame = 3
Query:  285 GGFKDTLADDLLA-PVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLL----------------PMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            G      ADDL A P+ + ++   RL+   + D+++G     G       RMA   AG P++V   T+NR C SGL A+   A AIKAG  D+ IA G+ESM+  +  V+G+         +  D  +                 M  T+ENVA+   ++R++QD                G   +EI+PV   ++  K GV     I  D+ +RP TT+  L  LK  F+ +G
Sbjct:   19 GALSSVRADDLAAIPLRELLVRNPRLDAECIDDVILGCANQAGEDNRNVARMATLLAGLPQSVSGTTINRLCGSGLDALGFAARAIKAGDGDLLIAGGVESMS-RAPFVMGKAASAFSRQAEMFDTTIGWRFVNPLMAQQFGTDSMPETAENVAELLKISREDQDSFALRSQQRTAKAQSSGILAEEIVPV---VLKNKKGVV--TEIQHDEHLRPETTLEQLRGLKAPFRANG 246          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: THIC_MOUSE (Acetyl-CoA acetyltransferase, cytosolic OS=Mus musculus GN=Acat2 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 6.648e-18
Identity = 76/248 (30.65%), Postives = 120/248 (48.39%), Query Frame = 3
Query:  222 AFDDDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT-------VNSISVVGQVNPKVEIFTQA-RDCL--LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            A  D VVIV+A RTAI  +  G        ++   V+K V+++ ++ P EV +++ G VL  G  +    R A+  AG P +VP  +    C SGL+AV   A +I  G   I +A G+E+M+       + +   +G+V     I      D      MGIT+ENVA+++ V+R+ QD                G F  EI+PV   +V  + G+ +   + +D+  R  + +  + KLKP F  DG
Sbjct:    3 AGSDPVVIVSAARTAI-GSFNGALSTVPVHEMGTTVIKEVLQRAKVAPEEVSEVIFGHVLTAGCGQN-PTRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQSIAMGDSTIVVAGGMENMSKAPHLTHLRTGVRMGEVPLADSILCDGLTDAFHNYHMGITAENVAKKWQVSREAQDKVAVLSQNRAEHAQKAGHFDKEIVPV---LVSSRKGLTE---VKIDEFPRHGSNLEAMGKLKPYFLTDG 242          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_SHELP (3-ketoacyl-CoA thiolase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=fadA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.683e-18
Identity = 66/229 (28.82%), Postives = 109/229 (47.60%), Query Frame = 3
Query:  240 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            VIV   RT + ++K G F++  A+ L A ++KA++ +  +L+P+ + D++ G V           R AA  AG P+     TVNR C S ++A+   A AI  G+ D  I  G+E M    + +   V+    + T        MG+T+E + +  G+TRQ+QD                G+F +EI       ++        + +  D+ IRP T++  LA L+P F
Sbjct:    5 VIVDCIRTPMGRSKAGVFRNMRAESLSAELMKALLVRNPQLDPNTIEDVIWGCVQQTLEQGFNIARNAALLAGIPKQAGAVTVNRLCGSSMEAIHQAARAIMTGMGDTFIVGGVEHM--GHVPMNHGVDFHPGLATNVAKASGMMGLTAEMLGKMHGITRQQQDEFAVRSHQRAHAATVEGRFANEI-----HAIEGHDANGALIKVMHDEVIRPETSLESLATLRPVF 226          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: THL_BACSU (Acetyl-CoA acetyltransferase OS=Bacillus subtilis GN=mmgA PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.134e-17
Identity = 77/244 (31.56%), Postives = 121/244 (49.59%), Query Frame = 3
Query:  240 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISV-VGQVNPKVEIFTQARDCLLPMGIT-----------SENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            VIV+A RT   K   G  K+  A +L   V+K  +++  ++  +V   V+G V+  GS + +  R AA  AG P +VP  T+N+ C+SGL+AV      I+A   DI +A G+ESM+    +V  G+   ++    + RD ++  G+T               A+ + ++R+EQD                GKF+DEI+PVN      K  V     +  D+ IR +T++  LAKL P +  DG
Sbjct:    5 VIVSAARTPFGKFG-GVLKEVKAAELGGIVMKEALQQAGVSGDDVEGNVMGMVVQAGSGQ-IPSRQAARLAGMPWSVPSETLNKVCASGLRAVTLCDQMIRAQDADILVAGGMESMSNIPYAVPAGRWGARMG-DGELRDLMVYDGLTCAFDEVHMAVHGNTAAKEYAISRREQDEWALRSHARAAKAADEGKFQDEIVPVNWIGRKGKPNV-----VDKDEAIRRDTSLDQLAKLAPIYASDG 240          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_SHEFN (3-ketoacyl-CoA thiolase OS=Shewanella frigidimarina (strain NCIMB 400) GN=fadA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.481e-17
Identity = 66/229 (28.82%), Postives = 108/229 (47.16%), Query Frame = 3
Query:  240 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAV-IEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            VIV   RT + ++K G F++  A+ L A ++KA+ +   +L+P+++ D++ G V           R A+  AG P+T    TVNR C S + A+   A AI  G  D  I  G+E M    + +   V+    +  +       MG+T+E + +  G+TR++QD                G+F  EI  +     +        + +  D+ IRP TT+  LA L+PAF
Sbjct:    5 VIVDCIRTPMGRSKAGVFRNVRAETLSAELMKALMVRNPQLDPNDIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDALHQAARAIMTGQGDTFIIGGVEHM--GHVPMNHGVDFHPGLANRVAKASGMMGLTAEMLGKMHGITREQQDAFAVRSHQRAHAATIEGRFAKEIWGIEGHDANGAL-----IKVMTDEVIRPETTLESLAGLRPAF 226          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_SHEON (3-ketoacyl-CoA thiolase OS=Shewanella oneidensis GN=fadA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.350e-17
Identity = 64/229 (27.95%), Postives = 107/229 (46.72%), Query Frame = 3
Query:  240 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            VIV   RT + ++K G F++  A+ L A ++K ++ +  +L+P+ + D++ G V           R A+  AG P+T    TVNR C S ++A+   A AI  G+ D  I  G+E M    + +   V+    +          MG+T+E + +  G+TR++QD                G+F  EI       ++        + +  D+ IRP TT+  LA L+P F
Sbjct:    5 VIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNTIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMEAIHQAARAIMTGMGDTFIIGGVEHM--GHVPMNHGVDFHPGLANNVAKASGMMGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATIEGRFAKEIYG-----IEGHDATGALIKVLQDEVIRPETTMESLAVLRPVF 226          
The following BLAST results are available for this feature:
BLAST of CV885170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
THIC_RAT2.285e-1831.05Acetyl-CoA acetyltransferase, cytosolic OS=Rattus ... [more]
PCAF_PSEAE2.984e-1831.02Beta-ketoadipyl-CoA thiolase OS=Pseudomonas aerugi... [more]
PAAJ_ECOLX3.897e-1830.34Beta-ketoadipyl-CoA thiolase OS=Escherichia coli G... [more]
THIM_BOVIN5.090e-1829.513-ketoacyl-CoA thiolase, mitochondrial OS=Bos taur... [more]
PAAJ_ECOLI5.090e-1830.34Beta-ketoadipyl-CoA thiolase OS=Escherichia coli (... [more]
THIC_MOUSE6.648e-1830.65Acetyl-CoA acetyltransferase, cytosolic OS=Mus mus... [more]
FADA_SHELP8.683e-1828.823-ketoacyl-CoA thiolase OS=Shewanella loihica (str... [more]
THL_BACSU1.134e-1731.56Acetyl-CoA acetyltransferase OS=Bacillus subtilis ... [more]
FADA_SHEFN1.481e-1728.823-ketoacyl-CoA thiolase OS=Shewanella frigidimarin... [more]
FADA_SHEON7.350e-1727.953-ketoacyl-CoA thiolase OS=Shewanella oneidensis G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885170 ID=CV885170; Name=CV885170; organism=Citrus sinensis; type=EST; length=935bp
TTCAACCAGGAAAGAGTAAACAAGTCATCCCTGGTTCTCGATTCATCAGA
ACTCAAAAGCTTTCCATTGAAACCTGAGAGTGAGAGATGGAGAAAGCTCT
TCACAGACAGAGAATTCTGCTTCAACATCTTCAACCTTCTTCTTCCCAAA
CCAGTGACTCGCCGGCTATTTCTGCTTCGATTTGTTCGGCTGGTGAGGCT
GCAGGGTACCATAGGAAGCCTGCTTTTGATGATGATGTCGTCATTGTGGC
TGCATACCGTACTGCAATTTGCAAGGCGAAACGTGGAGGCTTCAAGGATA
CTCTTGCCGATGATCTGCTTGCACCTGTTCTAAAGGCAGTGATAGAGAAA
ACGAGGTTGAATCCCAGTGAAGTAGGGGATATAGTTGTTGGTACAGTCTT
GGCACCTGGCTCAACAAGAGCCATGGAGTGTAGGATGGCAGCGTTCTATG
CTGGTTTCCCTGAAACGGTGCCCCTCAGAACTGTCAACAGGCAGTGTTCA
TCTGGCTTGCAGGCGGTTGCTGATGTTGCAACAGCTATAAAAGCTGGATT
GTATGACATTGGTATTGCTGCTGGATTGGAAAGCATGACTGTGAATTCTA
TTAGCGTTGTTGGCCAAGTTAACCCCAAAGTGGAGATCTTTACTCAAGCT
CGGGACTGTCTGCTTCCTATGGGTATCACTTCTGAAAATGTTGCACAGAG
ATTTGGTGTGACACGACAAGAGCAAGACCTGGCTGCCGTTGAATCTCATA
GGCGTGCTGCTGCTGCAACTGCATCTGGCAAGTTTAAAGATGAAATTATT
CCAGTGAATACCAAGATTGTGGACCCAAAAACTGGAGTGGAGAAGCGTGT
CACAATTTCTGTGGATGATGGAATTCGACCAAACACAACAATTGCAGATC
TGGCTAAGCTGAAGCCTGCATTTAAAAAGGATGGG
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