CV885170

Overview
NameCV885170
Unique NameCV885170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885170_ssr755 microsatellite CV885170_ssr755:755..766. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7887 contig Csv1_Contig7887:81..1016. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: THLA_STAAN (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain N315) GN=SA0342 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.380e-31
Identity = 86/244 (35.25%), Postives = 139/244 (56.97%), Query Frame = 3
Query:  237 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT-----VNSISVVGQVNPKVEIFTQARDCLLP------MGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            VV+ AAYRT I     G FKD  A DL A +++ +I++T LNPSE+ ++++G VL  G  +    R+AA   G PETVP  TVN+ C SGL+++     +I  G  DI +A G+E+M+     VN+     ++  +  + +   D L        MGIT+EN+ +++G++R+EQD                G+F  EI+PV+   +  + G  + + ++ D+G+R N ++  L++L+PAFKKDG
Sbjct:    4 VVLAAAYRTPI-GVFGGAFKDVPAYDLGATLIEHIIKETGLNPSEIDEVIIGNVLQAGQGQN-PARIAAMKGGLPETVPAFTVNKVCGSGLKSIQLAYQSIVTGENDIVLAGGMENMSQSPMLVNNSRFGFKMGHQSMVDSMVYDGLTDVFNQYHMGITAENLVEQYGISREEQDTFAVNSQHKAVRAQQNGEFDSEIVPVS---IPQRKG--EPILVTKDEGVRENVSVEKLSRLRPAFKKDG 240          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: THLA_STAAM (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV0354 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.380e-31
Identity = 86/244 (35.25%), Postives = 139/244 (56.97%), Query Frame = 3
Query:  237 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT-----VNSISVVGQVNPKVEIFTQARDCLLP------MGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            VV+ AAYRT I     G FKD  A DL A +++ +I++T LNPSE+ ++++G VL  G  +    R+AA   G PETVP  TVN+ C SGL+++     +I  G  DI +A G+E+M+     VN+     ++  +  + +   D L        MGIT+EN+ +++G++R+EQD                G+F  EI+PV+   +  + G  + + ++ D+G+R N ++  L++L+PAFKKDG
Sbjct:    4 VVLAAAYRTPI-GVFGGAFKDVPAYDLGATLIEHIIKETGLNPSEIDEVIIGNVLQAGQGQN-PARIAAMKGGLPETVPAFTVNKVCGSGLKSIQLAYQSIVTGENDIVLAGGMENMSQSPMLVNNSRFGFKMGHQSMVDSMVYDGLTDVFNQYHMGITAENLVEQYGISREEQDTFAVNSQHKAVRAQQNGEFDSEIVPVS---IPQRKG--EPILVTKDEGVRENVSVEKLSRLRPAFKKDG 240          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: THIL_CHRVO (Acetyl-CoA acetyltransferase OS=Chromobacterium violaceum GN=phaA PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 4.439e-30
Identity = 95/245 (38.78%), Postives = 132/245 (53.88%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG-----QVNPKVEIFTQARDCLLP------MGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            +V IVAA RTAI  +  GG     A +L A V+KA++EKT + P +V ++++G VL  GS +    R A   AG P T P  T+N  C SGL+AV   A AI AG  DI IA G ESM+++   + G     ++     + T   D L        MGIT+ENVA ++G+ R+EQD                GKF+DEI+PV   +V  + G    +    D+ I+ + +   LAKL+PAFKKDG
Sbjct:    2 EVAIVAAQRTAI-GSFGGGLAKIPAPELGATVIKALLEKTGVKPEDVSEVILGQVLTAGSGQN-PARQALIKAGLPVTTPATTLNVVCGSGLRAVHLAAQAILAGDADIVIAGGQESMSLSPHILPGSRDGFRMGNAQLVDTMVNDGLTDAYNAYHMGITAENVAAKYGIGREEQDAFSLQSQQRAAAAQKAGKFRDEIVPV---LVPQRKG--DPLAFDADEFIKHDASADGLAKLRPAFKKDG 239          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: THLA_CLOAB (Acetyl-CoA acetyltransferase OS=Clostridium acetobutylicum GN=thlA PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 8.371e-29
Identity = 88/245 (35.92%), Postives = 128/245 (52.24%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT-----VNSISVVGQVNPKVEIFTQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            +VVI +A RTAI    +   KD  A DL A  +K  ++K  + P +V ++++G VL  G  +    R A+F AG P  +P  T+N+ C SGL+ V+  A  IKAG  D+ IA G+E+M+      N+     ++     +     D L        MGIT+EN+A+R+ ++R+EQD                G+FKDEI+PV  K      G +    +  D+  R  +TI  LAKLKPAFKKDG
Sbjct:    3 EVVIASAVRTAIGSYGKS-LKDVPAVDLGATAIKEAVKKAGIKPEDVNEVILGNVLQAGLGQN-PARQASFKAGLPVEIPAMTINKVCGSGLRTVSLAAQIIKAGDADVIIAGGMENMSRAPYLANNARWGYRMGNAKFVDEMITDGLWDAFNDYHMGITAENIAERWNISREEQDEFALASQKKAEEAIKSGQFKDEIVPVVIK------GRKGETVVDTDEHPRFGSTIEGLAKLKPAFKKDG 239          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: THLA_STAES (Probable acetyl-CoA acyltransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_2384 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.436e-28
Identity = 87/244 (35.66%), Postives = 135/244 (55.33%), Query Frame = 3
Query:  237 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG-----QVNPKVEIFTQARDCLLP------MGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            +V+  AYRT I     G FKD  A +L A V++ ++E ++++P+E+ ++++G VL  G  +    R+AA + G PE VP  TVN+ C SGL+A+     +I AG  +I IA G+ESM+ + + +       ++  +    +   D L        MGIT+EN+ +++ ++R+EQD                G F  EI+PV    V  + G    + IS D+GIRP TTI  LA+L+PAFKKDG
Sbjct:    4 IVLAEAYRTPI-GVFGGVFKDIPAYELGATVIRQILEHSQIDPNEINEVILGNVLQAGQGQN-PARIAAIHGGVPEAVPSFTVNKVCGSGLKAIQLAYQSIVAGDNEIVIAGGMESMSQSPMLLKNSRFGFKMGNQTLEDSMIADGLTDKFNDYHMGITAENLVEQYQISRKEQDQFAFDSQQKASRAQQAGVFDAEIVPVE---VPQRKG--DPLIISQDEGIRPQTTIDKLAQLRPAFKKDG 240          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: THLA_STAEQ (Probable acetyl-CoA acyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0032 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.436e-28
Identity = 87/244 (35.66%), Postives = 135/244 (55.33%), Query Frame = 3
Query:  237 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG-----QVNPKVEIFTQARDCLLP------MGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            +V+  AYRT I     G FKD  A +L A V++ ++E ++++P+E+ ++++G VL  G  +    R+AA + G PE VP  TVN+ C SGL+A+     +I AG  +I IA G+ESM+ + + +       ++  +    +   D L        MGIT+EN+ +++ ++R+EQD                G F  EI+PV    V  + G    + IS D+GIRP TTI  LA+L+PAFKKDG
Sbjct:    4 IVLAEAYRTPI-GVFGGVFKDIPAYELGATVIRQILEHSQIDPNEINEVILGNVLQAGQGQN-PARIAAIHGGVPEAVPSFTVNKVCGSGLKAIQLAYQSIVAGDNEIVIAGGMESMSQSPMLLKNSRFGFKMGNQTLEDSMIADGLTDKFNDYHMGITAENLVEQYQISRKEQDQFAFDSQQKASRAQQAGVFDAEIVPVE---VPQRKG--DPLIISQDEGIRPQTTIDKLAQLRPAFKKDG 240          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: ATOB_PSEAE (Acetyl-CoA acetyltransferase OS=Pseudomonas aeruginosa GN=atoB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.693e-27
Identity = 88/249 (35.34%), Postives = 136/249 (54.62%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLAD----DLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG-----QVNPKVEIFTQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            DVVIVAA RTA+     G F+ +LA     +L A V++ ++E+T L+  +V ++++G VL  GS +    R AA  AG P  VP  T+N+ C SGL+A+   A AI+ G  ++ +A G E+M++    + G     ++     + +   D L        MGIT+EN+A+++G+TR+EQD                G+F+DEI P+    V  + G  + +    D+  R  TT+  LAKLKPAF+KDG
Sbjct:    3 DVVIVAATRTAV-----GSFQGSLAGIPAPELGAAVIRRLLEQTGLDAGQVDEVILGQVLTAGSGQN-PARQAAIKAGLPVGVPAMTLNKVCGSGLKALHLGAQAIRCGDAEVIVAGGQENMSLAPYVMPGARTGLRMGHAKLVDSMIEDGLWDAFNDYHMGITAENLAEKYGLTREEQDAFAAASQQKAIAAIEGGRFRDEITPIQ---VPQRKG--EPLGFDTDEQPRAGTTVEALAKLKPAFRKDG 240          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: THIL_RALEH (Acetyl-CoA acetyltransferase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=phbA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.336e-26
Identity = 87/245 (35.51%), Postives = 126/245 (51.43%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG-----QVNPKVEIFTQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            DVVIV+A RTA+ K   G      A +L A V+KA +E+  + P +V ++++G VL  GS +    R AA  AG P  VP  T+N+ C SGL+AV   A AI AG  +I +A G E+M+     + G     ++     + T   D L        MGIT+ENVA+ +G+TR+ QD                GKF +EI+PV   ++  + G    V    D+ +R   T+  ++ LKPAF K G
Sbjct:    3 DVVIVSAARTAVGKFG-GSLAKIPAPELGAVVIKAALERAGVKPEQVSEVIMGQVLTAGSGQN-PARQAAIKAGLPAMVPAMTINKVCGSGLKAVMLAANAIMAGDAEIVVAGGQENMSAAPHVLPGSRDGFRMGDAKLVDTMIVDGLWDVYNQYHMGITAENVAKEYGITREAQDEFAVGSQNKAEAAQKAGKFDEEIVPV---LIPQRKG--DPVAFKTDEFVRQGATLDSMSGLKPAFDKAG 240          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: THIK_ENCCU (3-ketoacyl-CoA thiolase, peroxisomal OS=Encephalitozoon cuniculi GN=FOX3 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.280e-26
Identity = 77/235 (32.77%), Postives = 121/235 (51.49%), Query Frame = 3
Query:  231 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            +DVV+V A RT I +A RG  +    D+L+   ++ +IEKT ++P  + ++++G  L+      +  RM    AG P   P+  +NR C SGL++V  +A  I++G  +IG+A G ESMT   +     ++ +      A DC+L +G  SE + +  GVTR E D                G F  EIIP+       + G E   T+  D+GIR  T++  +  LKP F++DG
Sbjct:    5 EDVVVVGALRTPIGRATRGKLRSLRNDELVTAAIRGIIEKTGIDPRLIEEVILGHCLSSMEGN-VAARMGVLRAGVPVETPVMIINRLCGSGLESVGLIAEKIRSGRIEIGLAGGFESMTSYGLPKEYTLS-RGGACEDAEDCMLTLGEVSEMLGKTHGVTRSEADEYAVTSQKRALEATKKGHFLAEIIPM-------RVGDE---TVERDEGIR-ETSLGTIESLKPVFRQDG 226          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: THIL_THIVI (Acetyl-CoA acetyltransferase OS=Thiocystis violacea GN=phbA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.299e-25
Identity = 89/252 (35.32%), Postives = 124/252 (49.21%), Query Frame = 3
Query:  231 DDVVIVAAYRTAICKAKRGGFKDTL-ADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNS----ISVVGQ------------VNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            D +VIV A RTAI     GG    L A D+   VLKA+IE+T + P +V ++++G VL  G  +    R     AG P TVP  T+N+ C SGL+AV     A+  G  +I IA G ESM+ +S     S  GQ            V+   + F Q       MG+T+EN+A+++  TR+ QD                G+F DEIIPV+   +  + G    +    D+  RP TT   L +L+PAF K G
Sbjct:    3 DTIVIVDAGRTAI--GTFGGALSALQATDIGTTVLKALIERTGIAPEQVSEVILGQVLTAGCGQN-PARQTTLMAGLPHTVPAMTINKVCGSGLKAVHLAMQAVACGDAEIVIAGGQESMSQSSHVLPRSREGQRMGDWPMKDTMIVDGLWDAFNQCH-----MGVTAENIAKKYAFTREAQDAFAAASQQKAEAAIQSGRFADEIIPVS---IPQRKG--DPLVFDTDEFPRPGTTAETLGRLRPAFDKQG 241          
The following BLAST results are available for this feature:
BLAST of CV885170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
THLA_STAAN1.380e-3135.25Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAAM1.380e-3135.25Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THIL_CHRVO4.439e-3038.78Acetyl-CoA acetyltransferase OS=Chromobacterium vi... [more]
THLA_CLOAB8.371e-2935.92Acetyl-CoA acetyltransferase OS=Clostridium acetob... [more]
THLA_STAES2.436e-2835.66Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAEQ2.436e-2835.66Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
ATOB_PSEAE2.693e-2735.34Acetyl-CoA acetyltransferase OS=Pseudomonas aerugi... [more]
THIL_RALEH1.336e-2635.51Acetyl-CoA acetyltransferase OS=Ralstonia eutropha... [more]
THIK_ENCCU2.280e-2632.773-ketoacyl-CoA thiolase, peroxisomal OS=Encephalit... [more]
THIL_THIVI4.299e-2535.32Acetyl-CoA acetyltransferase OS=Thiocystis violace... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885170 ID=CV885170; Name=CV885170; organism=Citrus sinensis; type=EST; length=935bp
TTCAACCAGGAAAGAGTAAACAAGTCATCCCTGGTTCTCGATTCATCAGA
ACTCAAAAGCTTTCCATTGAAACCTGAGAGTGAGAGATGGAGAAAGCTCT
TCACAGACAGAGAATTCTGCTTCAACATCTTCAACCTTCTTCTTCCCAAA
CCAGTGACTCGCCGGCTATTTCTGCTTCGATTTGTTCGGCTGGTGAGGCT
GCAGGGTACCATAGGAAGCCTGCTTTTGATGATGATGTCGTCATTGTGGC
TGCATACCGTACTGCAATTTGCAAGGCGAAACGTGGAGGCTTCAAGGATA
CTCTTGCCGATGATCTGCTTGCACCTGTTCTAAAGGCAGTGATAGAGAAA
ACGAGGTTGAATCCCAGTGAAGTAGGGGATATAGTTGTTGGTACAGTCTT
GGCACCTGGCTCAACAAGAGCCATGGAGTGTAGGATGGCAGCGTTCTATG
CTGGTTTCCCTGAAACGGTGCCCCTCAGAACTGTCAACAGGCAGTGTTCA
TCTGGCTTGCAGGCGGTTGCTGATGTTGCAACAGCTATAAAAGCTGGATT
GTATGACATTGGTATTGCTGCTGGATTGGAAAGCATGACTGTGAATTCTA
TTAGCGTTGTTGGCCAAGTTAACCCCAAAGTGGAGATCTTTACTCAAGCT
CGGGACTGTCTGCTTCCTATGGGTATCACTTCTGAAAATGTTGCACAGAG
ATTTGGTGTGACACGACAAGAGCAAGACCTGGCTGCCGTTGAATCTCATA
GGCGTGCTGCTGCTGCAACTGCATCTGGCAAGTTTAAAGATGAAATTATT
CCAGTGAATACCAAGATTGTGGACCCAAAAACTGGAGTGGAGAAGCGTGT
CACAATTTCTGTGGATGATGGAATTCGACCAAACACAACAATTGCAGATC
TGGCTAAGCTGAAGCCTGCATTTAAAAAGGATGGG
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