CV885170

Overview
NameCV885170
Unique NameCV885170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: THLA_CLOD6 (Acetyl-CoA acetyltransferase OS=Clostridium difficile (strain 630) GN=thlA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.208e-24
Identity = 82/245 (33.47%), Postives = 123/245 (50.20%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT-----VNSISVVGQVNPKVEIFTQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            +VVI +A RTA+  +  G FK   A +L     K  I++  + P  + + ++G VL  G  + +  R  A  AG P   P  T+N  C SGL++V+  +  I  G  DI +  G E+M+     V S     ++     + +  +D L        MGIT+EN+A+++ +TR+EQD                GKF +EI+PV  K     T V+K      D+ I+P TT+  LAKL+PAFKKDG
Sbjct:    3 EVVIASAARTAV-GSFGGAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGLGQNI-ARQIALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSMSPYLVPSARYGARMGDAAFVDSMIKDGLSDIFNNYHMGITAENIAEQWNITREEQDELALASQNKAEKAQAEGKFDEEIVPVVIKGRKGDTVVDK------DEYIKPGTTMEKLAKLRPAFKKDG 239          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_PSEU2 (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=fadA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.059e-23
Identity = 77/238 (32.35%), Postives = 121/238 (50.84%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISV---DDGIRPNTTIADLAKLKPAFKKDG 935
            DVVIV   RT + ++K G  ++T A+D+ A ++  ++E+  +++P+EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI     D+ I  G+E M    +S++  V+P   +   A      MG+T+E + +  G+TR++QD                GKFKDEIIP+         G ++   + V   D+ IRP+TT+  LA LKPAF   G
Sbjct:    7 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNNKVDPAEVEDVIWGCVNQTLEQGWNIARMASLLTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTNNGDVFIIGGVEHM--GHVSMMHGVDPNPHMSLHAAKASGMMGLTAEMLGKMHGITREQQDAFGLRSHQLAHKATLEGKFKDEIIPMQ--------GYDENGFLKVFDYDETIRPDTTLESLAALKPAFNPKG 234          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_PSEF5 (3-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=fadA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.383e-23
Identity = 77/235 (32.77%), Postives = 119/235 (50.64%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            DVVIV   RT + ++K G  ++T A+D+ A ++  ++E+  +++P+EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI  G  D+ +  G+E M    +S++  V+P   +   A      MG+T+E + +  G+TR++QD                GKFKDEIIP+       + G  K      D+ IRP TT+  LA LKPAF   G
Sbjct:    7 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNAKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAGQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM--GHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGITREQQDAFGVRSHQLAHKATVEGKFKDEIIPMQGY---DENGFLK--LFDYDETIRPETTLESLAALKPAFNPKG 234          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_PSE14 (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=fadA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.383e-23
Identity = 76/238 (31.93%), Postives = 121/238 (50.84%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISV---DDGIRPNTTIADLAKLKPAFKKDG 935
            DVVIV   RT + ++K G  ++T A+D+ A ++  ++E+  +++P+EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI     D+ +  G+E M    +S++  V+P   +   A      MG+T+E + +  G+TR++QD                GKFKDEIIP+         G ++   + V   D+ IRP+TT+  LA LKPAF   G
Sbjct:    7 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNNKVDPAEVEDVIWGCVNQTLEQGWNIARMASLLTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTNNGDVFVIGGVEHM--GHVSMMHGVDPNPHMSLHAAKASGMMGLTAEMLGKMHGITREQQDAFGLRSHQLAHKATLEGKFKDEIIPMQ--------GYDENGFLKVFDYDETIRPDTTLESLAALKPAFNPKG 234          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_PSESM (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. tomato GN=fadA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.806e-23
Identity = 76/238 (31.93%), Postives = 121/238 (50.84%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISV---DDGIRPNTTIADLAKLKPAFKKDG 935
            DVVIV   RT + ++K G  ++T A+D+ A ++  ++E+  +++P+EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI     D+ +  G+E M    +S++  V+P   +   A      MG+T+E + +  G+TR++QD                GKFKDEIIP+         G ++   + V   D+ IRP+TT+  LA LKPAF   G
Sbjct:    7 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNNKVDPAEVEDVIWGCVNQTLEQGWNIARMASLLTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTNNGDVFVIGGVEHM--GHVSMMHGVDPNPHMSLHAAKASGMMGLTAEMLGKMHGITREQQDAFGLRSHQLAHKATLEGKFKDEIIPMQ--------GYDENGFLRVFDYDETIRPDTTLESLAALKPAFNPKG 234          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: THIL_ZOORA (Acetyl-CoA acetyltransferase OS=Zoogloea ramigera GN=phbA PE=1 SV=4)

HSP 1 Score: 109.768 bits (273), Expect = 2.359e-23
Identity = 80/242 (33.06%), Postives = 126/242 (52.07%), Query Frame = 3
Query:  240 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTV--NSISVVG--QVNPKVEIFTQARDCLLP------MGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            +++A+ RTA+  +  G F +T A +L A V+ AV+E+  +   EV ++++G VL  G  +    R AA  AG P+      +N+ C SGL+AVA     I  G   I +A G+ESM++  +   + G  ++     I T  +D L        MG T+ENVA+++ ++R EQD                G+FKDEI+P   K      G +  +T+  D+ IR   T+  +AKL+PAF K+G
Sbjct:    6 IVIASARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQN-PARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLAGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFDKEG 239          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: THIL_RHIME (Acetyl-CoA acetyltransferase OS=Rhizobium meliloti GN=phbA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.359e-23
Identity = 83/243 (34.16%), Postives = 127/243 (52.26%), Query Frame = 3
Query:  237 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTV--NSISVVG--QVNPKVEIFTQARDCLLP------MGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            +VI +A RTA+  +  G F +TLA +L A  +KAV+E+  +   EV ++++G VL P        R AA  AG P+      +N+ C SGL+AVA     I  G   + +A G+ESM++  +   + G  ++     I T  +D L        MGIT+ENVA+++ +TR+EQD                G+F DEI+P    +V  + G    V +  D+ IR   T+  +AKL+PAF K+G
Sbjct:    6 IVIASAARTAV-GSFNGAFGNTLAHELGAAAIKAVLERAGVEAGEVDEVILGQVL-PAGEGQNPARQAAMKAGLPQEKTAWGMNQLCGSGLRAVALGMQQIATGDAKVIVAGGMESMSMAPHCAHLRGGVKMGDYKMIDTMIKDGLTDAFYGYHMGITAENVARKWQLTREEQDEFALASQNKAEAAQKAGRFADEIVPF---VVKTRKG---DVNVDQDEYIRHGATLDSIAKLRPAFDKEG 240          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: ATOB_HAEIN (Acetyl-CoA acetyltransferase OS=Haemophilus influenzae GN=atoB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.359e-23
Identity = 81/247 (32.79%), Postives = 130/247 (52.63%), Query Frame = 3
Query:  231 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFT-QARDCLLP-----------MGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            ++VVIV+A RT I  +  G      A DL A V++  I++  +  + V ++++G VL  G  +    R AA  AG  + +P  T+N+ C SGL++VA  A +I +G  DI +  G+E+M+     +  +V   V++     RD ++            MGIT+EN+A+++G++RQ QD                G F  EI+PV   +V  + G    + +S D+  + +TT   LAKLKPAFKK+G
Sbjct:    2 ENVVIVSAVRTPI-GSFNGALSSVSAVDLGAIVIQEAIKRANIESALVNEVIMGNVLQAGLGQN-PARQAALKAGIEKEIPSLTINKVCGSGLKSVALGAQSIISGDADIVVVGGMENMSQAPYLLDSKVRQGVKMGNLTLRDTMIEDGLTCASNHYHMGITAENIAEQYGISRQAQDELALRSQTLASQAVQLGVFDKEIVPV---MVKTRKG---DIIVSRDEYPKADTTAEGLAKLKPAFKKEG 240          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_VIBCH (3-ketoacyl-CoA thiolase OS=Vibrio cholerae GN=fadA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.964e-23
Identity = 74/230 (32.17%), Postives = 112/230 (48.70%), Query Frame = 3
Query:  237 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            VVIV   RT + ++K G F+   A+DL A ++K ++ +  ++NP E+ DI  G V           R AA  AG P  +   TVNR C S +QA+ D A AI  G  +I +  G+E M    + +   V+    +          MG+T+E + +  G++RQ+QD                G+FK+EI+P      D         T+  D+ IRP TT+A LA+L+P F
Sbjct:    4 VVIVDCLRTPMGRSKGGAFRHQRAEDLSAHLMKGILARNPQVNPKEIEDIYWGCVQQTLEQGFNVARNAALLAGLPIEIGAVTVNRLCGSSMQALHDAARAIMVGDAEICLVGGVEHM--GHVPMTHGVDFHPGLSKNVAKAAGMMGLTAEMLGKLHGISRQQQDEFAARSHARAHAATLEGRFKNEILPTEGHAADGTL-----FTLDYDEVIRPETTVAGLAELRPVF 226          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_VIBC3 (3-ketoacyl-CoA thiolase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=fadA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.964e-23
Identity = 74/230 (32.17%), Postives = 112/230 (48.70%), Query Frame = 3
Query:  237 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            VVIV   RT + ++K G F+   A+DL A ++K ++ +  ++NP E+ DI  G V           R AA  AG P  +   TVNR C S +QA+ D A AI  G  +I +  G+E M    + +   V+    +          MG+T+E + +  G++RQ+QD                G+FK+EI+P      D         T+  D+ IRP TT+A LA+L+P F
Sbjct:    4 VVIVDCLRTPMGRSKGGAFRHQRAEDLSAHLMKGILARNPQVNPKEIEDIYWGCVQQTLEQGFNVARNAALLAGLPIEIGAVTVNRLCGSSMQALHDAARAIMVGDAEICLVGGVEHM--GHVPMTHGVDFHPGLSKNVAKAAGMMGLTAEMLGKLHGISRQQQDEFAARSHARAHAATLEGRFKNEILPTEGHAADGTL-----FTLDYDEVIRPETTVAGLAELRPVF 226          
The following BLAST results are available for this feature:
BLAST of CV885170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
THLA_CLOD66.208e-2433.47Acetyl-CoA acetyltransferase OS=Clostridium diffic... [more]
FADA_PSEU21.059e-2332.353-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
FADA_PSEF51.383e-2332.773-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens... [more]
FADA_PSE141.383e-2331.933-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
FADA_PSESM1.806e-2331.933-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
THIL_ZOORA2.359e-2333.06Acetyl-CoA acetyltransferase OS=Zoogloea ramigera ... [more]
THIL_RHIME2.359e-2334.16Acetyl-CoA acetyltransferase OS=Rhizobium meliloti... [more]
ATOB_HAEIN2.359e-2332.79Acetyl-CoA acetyltransferase OS=Haemophilus influe... [more]
FADA_VIBCH8.964e-2332.173-ketoacyl-CoA thiolase OS=Vibrio cholerae GN=fadA... [more]
FADA_VIBC38.964e-2332.173-ketoacyl-CoA thiolase OS=Vibrio cholerae serotyp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885170 ID=CV885170; Name=CV885170; organism=Citrus sinensis; type=EST; length=935bp
TTCAACCAGGAAAGAGTAAACAAGTCATCCCTGGTTCTCGATTCATCAGA
ACTCAAAAGCTTTCCATTGAAACCTGAGAGTGAGAGATGGAGAAAGCTCT
TCACAGACAGAGAATTCTGCTTCAACATCTTCAACCTTCTTCTTCCCAAA
CCAGTGACTCGCCGGCTATTTCTGCTTCGATTTGTTCGGCTGGTGAGGCT
GCAGGGTACCATAGGAAGCCTGCTTTTGATGATGATGTCGTCATTGTGGC
TGCATACCGTACTGCAATTTGCAAGGCGAAACGTGGAGGCTTCAAGGATA
CTCTTGCCGATGATCTGCTTGCACCTGTTCTAAAGGCAGTGATAGAGAAA
ACGAGGTTGAATCCCAGTGAAGTAGGGGATATAGTTGTTGGTACAGTCTT
GGCACCTGGCTCAACAAGAGCCATGGAGTGTAGGATGGCAGCGTTCTATG
CTGGTTTCCCTGAAACGGTGCCCCTCAGAACTGTCAACAGGCAGTGTTCA
TCTGGCTTGCAGGCGGTTGCTGATGTTGCAACAGCTATAAAAGCTGGATT
GTATGACATTGGTATTGCTGCTGGATTGGAAAGCATGACTGTGAATTCTA
TTAGCGTTGTTGGCCAAGTTAACCCCAAAGTGGAGATCTTTACTCAAGCT
CGGGACTGTCTGCTTCCTATGGGTATCACTTCTGAAAATGTTGCACAGAG
ATTTGGTGTGACACGACAAGAGCAAGACCTGGCTGCCGTTGAATCTCATA
GGCGTGCTGCTGCTGCAACTGCATCTGGCAAGTTTAAAGATGAAATTATT
CCAGTGAATACCAAGATTGTGGACCCAAAAACTGGAGTGGAGAAGCGTGT
CACAATTTCTGTGGATGATGGAATTCGACCAAACACAACAATTGCAGATC
TGGCTAAGCTGAAGCCTGCATTTAAAAAGGATGGG
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