CV885170

Overview
NameCV885170
Unique NameCV885170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: ATOB_ECOLI (Acetyl-CoA acetyltransferase OS=Escherichia coli (strain K12) GN=atoB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.171e-22
Identity = 85/244 (34.84%), Postives = 122/244 (50.00%), Query Frame = 3
Query:  240 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFT-QARDCLL-----------PMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            VIV+A RTAI  +  G    T A DL A V+KA IE+ +++   V ++++G VL  G  +    R A   +G  ETV   TVN+ C SGL++VA  A AI+AG     +A G+E+M++    +  +      +   Q  D +L            MGIT+ENVA+ +G+TR+ QD                G F  EI+PVN  +V  K    K    S D+  + N+T   L  L+PAF K G
Sbjct:    5 VIVSAVRTAI-GSFNGSLASTSAIDLGATVIKAAIERAKIDSQHVDEVIMGNVLQAGLGQN-PARQALLKSGLAETVCGFTVNKVCGSGLKSVALAAQAIQAGQAQSIVAGGMENMSLAPYLLDAKARSGYRLGDGQVYDVILRDGLMCATHGYHMGITAENVAKEYGITREMQDELALHSQRKAAAAIESGAFTAEIVPVN--VVTRK----KTFVFSQDEFPKANSTAEALGALRPAFDKAG 240          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_PSEAE (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa GN=fadA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.997e-22
Identity = 74/238 (31.09%), Postives = 120/238 (50.42%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISV---DDGIRPNTTIADLAKLKPAFKKDG 935
            DVVIV   RT + ++K G  ++T A+ + A ++  ++E+  +++P+EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI+ G  D+ +  G+E M    + ++  V+P   +   A      MG+T+E + +  G++R+ QD                GKFKDEIIP+         G ++   + V   D+ IRP TT+  LA+LKPAF   G
Sbjct:    7 DVVIVDFGRTPMGRSKGGMHRNTRAETMSAHLISKLLERNPKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIQTGNGDVFVIGGVEHM--GHVGMMHGVDPNPHLSLYAAKASGMMGLTAEMLGKMHGISREAQDKFGARSHQLAWKATQEGKFKDEIIPME--------GYDENGFLKVFDFDETIRPETTVETLAELKPAFNPKG 234          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_PSEAB (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=fadA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.997e-22
Identity = 74/238 (31.09%), Postives = 120/238 (50.42%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISV---DDGIRPNTTIADLAKLKPAFKKDG 935
            DVVIV   RT + ++K G  ++T A+ + A ++  ++E+  +++P+EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI+ G  D+ +  G+E M    + ++  V+P   +   A      MG+T+E + +  G++R+ QD                GKFKDEIIP+         G ++   + V   D+ IRP TT+  LA+LKPAF   G
Sbjct:    7 DVVIVDFGRTPMGRSKGGMHRNTRAETMSAHLISKLLERNPKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIQTGNGDVFVIGGVEHM--GHVGMMHGVDPNPHLSLYAAKASGMMGLTAEMLGKMHGISREAQDKFGARSHQLAWKATQEGKFKDEIIPME--------GYDENGFLKVFDFDETIRPETTVETLAQLKPAFNPKG 234          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_PSEA7 (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa (strain PA7) GN=fadA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.997e-22
Identity = 74/238 (31.09%), Postives = 120/238 (50.42%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISV---DDGIRPNTTIADLAKLKPAFKKDG 935
            DVVIV   RT + ++K G  ++T A+ + A ++  ++E+  +++P+EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI+ G  D+ +  G+E M    + ++  V+P   +   A      MG+T+E + +  G++R+ QD                GKFKDEIIP+         G ++   + V   D+ IRP TT+  LA+LKPAF   G
Sbjct:    7 DVVIVDFGRTPMGRSKGGMHRNTRAETMSAHLISKLLERNPKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIQTGNGDVFVIGGVEHM--GHVGMMHGVDPNPHLSLYAAKASGMMGLTAEMLGKMHGISREAQDKFGARSHQLAWKATQEGKFKDEIIPME--------GYDENGFLKVFDFDETIRPETTVETLAQLKPAFNPKG 234          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: THIL_MYCTU (Probable acetyl-CoA acetyltransferase OS=Mycobacterium tuberculosis GN=fadA4 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.810e-22
Identity = 89/248 (35.89%), Postives = 118/248 (47.58%), Query Frame = 3
Query:  240 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT------VNSISVVGQVNPKV----------EIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            +IVA  RT I K   G  KD  A +L A  +K  +EK  +  S V  +++G VL  G+ + M  R AA  AG    VP  T+N+ C SG+ A+A     I+A  +D+ +A G ESMT      +NS S     +  V          ++FT       PMG  +E        TR EQD                G F DE+IPVN   +  +TG   + T   D+GIR NTT A LA LKPAF+ DG
Sbjct:    1 MIVAGARTPIGKLM-GSLKDFSASELGAIAIKGALEKANVPASLVEYVIMGQVLTAGAGQ-MPARQAAVAAGIGWDVPALTINKMCLSGIDAIALADQLIRAREFDVVVAGGQESMTKAPHLLMNSRSGYKYGDVTVLDHMAYDGLHDVFTDQ-----PMGALTEQRNDVDMFTRSEQDEYAAASHQKAAAAWKDGVFADEVIPVN---IPQRTGDPLQFT--EDEGIRANTTAAALAGLKPAFRGDG 236          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: THIL_MYCBO (Probable acetyl-CoA acetyltransferase OS=Mycobacterium bovis GN=fadA4 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.810e-22
Identity = 89/248 (35.89%), Postives = 118/248 (47.58%), Query Frame = 3
Query:  240 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT------VNSISVVGQVNPKV----------EIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            +IVA  RT I K   G  KD  A +L A  +K  +EK  +  S V  +++G VL  G+ + M  R AA  AG    VP  T+N+ C SG+ A+A     I+A  +D+ +A G ESMT      +NS S     +  V          ++FT       PMG  +E        TR EQD                G F DE+IPVN   +  +TG   + T   D+GIR NTT A LA LKPAF+ DG
Sbjct:    1 MIVAGARTPIGKLM-GSLKDFSASELGAIAIKGALEKANVPASLVEYVIMGQVLTAGAGQ-MPARQAAVAAGIGWDVPALTINKMCLSGIDAIALADQLIRAREFDVVVAGGQESMTKAPHLLMNSRSGYKYGDVTVLDHMAYDGLHDVFTDQ-----PMGALTEQRNDVDMFTRSEQDEYAAASHQKAAAAWKDGVFADEVIPVN---IPQRTGDPLQFT--EDEGIRANTTAAALAGLKPAFRGDG 236          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_MARAV (3-ketoacyl-CoA thiolase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=fadA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.589e-22
Identity = 71/231 (30.74%), Postives = 114/231 (49.35%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            DVV+V   RT + +AK G F++  A+ L A +++A+ E+  +L+P EV D++ G V           R  +     P     +TVNR C S + A+   A AI+ G  D+ +  G+E M    ++     NP    ++     +  MG+T+E +A+  G+TR++QD                G+FK+EI+P+       + G  K   I  D+ IRP TT   L +L+PAF
Sbjct:    7 DVVVVDCVRTPMGRAKNGCFRNVRAETLSAALIEALFERNPKLDPKEVEDVIWGCVNQTKEQGFNVARQISLLTRIPHESAAQTVNRLCGSAMSAIHTAAQAIQTGNGDVFLVGGVEHMGHVPMTEGFDHNPAASKYSAKASNM--MGLTAEMLAKMHGITREQQDEFGARSHRLAHEATQEGRFKNEIVPIEG---HDENGFVK--LIEEDETIRPETTAESLGQLRPAF 230          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_SERP5 (3-ketoacyl-CoA thiolase OS=Serratia proteamaculans (strain 568) GN=fadA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.911e-22
Identity = 78/232 (33.62%), Postives = 114/232 (49.14%), Query Frame = 3
Query:  231 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            ++VVIV A RT + ++K G F+   A+DL A +++AV+ +   L+ +E+ DI  G V           R A+  A  P +VP  TVNR C S +QA+ D A AI  G   + +  G+E M    + +   V+    +          MG+T+E +A+   ++RQ QD                G FK+EIIP      D   GV  R     D+ IRP TT+A LA L+PAF
Sbjct:    2 ENVVIVDAVRTPMGRSKGGAFRQVRAEDLSAHLMRAVLSRNPSLDAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDAARAIMVGDAHVSLIGGVEHM--GHVPMNHGVDFHPGLSRSVAKAAGMMGLTAEMLAKMHNISRQMQDEFAARSHQRAHAATLAGYFKNEIIPTTGHDAD---GVLTR--YDFDEVIRPETTVASLAALRPAF 226          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_VIBVY (3-ketoacyl-CoA thiolase OS=Vibrio vulnificus (strain YJ016) GN=fadA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.294e-21
Identity = 73/231 (31.60%), Postives = 114/231 (49.35%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            +VVIV   RT + ++K G F+ T A+DL A ++K ++ +  ++NPSE+ DI  G V           R AA  AG P  +   TVNR C S +QA+ D A AI  G  +I +  G+E M    + +   V+    +          MG+T+E + +  G++R++QD                G+FK+EI+P      D         T+  D+ IRP TT+  L++L+P F
Sbjct:    3 NVVIVDCLRTPMGRSKGGAFRHTRAEDLSAHLMKGILARNPQVNPSEIEDIYWGCVQQTLEQGFNVARNAALLAGLPIEIGAVTVNRLCGSSMQALHDGARAIMTGDAEICLIGGVEHM--GHVPMNHGVDFHPGMSKHVAKAAGMMGLTAEMLGKLHGISREQQDEFAARSHARAHAATLEGRFKNEILPTEGHAADGTL-----FTLDHDEVIRPETTVEGLSQLRPVF 226          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_VIBVU (3-ketoacyl-CoA thiolase OS=Vibrio vulnificus GN=fadA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.294e-21
Identity = 73/231 (31.60%), Postives = 114/231 (49.35%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            +VVIV   RT + ++K G F+ T A+DL A ++K ++ +  ++NPSE+ DI  G V           R AA  AG P  +   TVNR C S +QA+ D A AI  G  +I +  G+E M    + +   V+    +          MG+T+E + +  G++R++QD                G+FK+EI+P      D         T+  D+ IRP TT+  L++L+P F
Sbjct:    3 NVVIVDCLRTPMGRSKGGAFRHTRAEDLSAHLMKGILARNPQVNPSEIEDIYWGCVQQTLEQGFNVARNAALLAGLPIEIGAVTVNRLCGSSMQALHDGARAIMTGDAEICLIGGVEHM--GHVPMNHGVDFHPGMSKHVAKAAGMMGLTAEMLGKLHGISREQQDEFAARSHARAHAATMEGRFKNEILPTEGHAADGTL-----FTLDHDEVIRPETTVEGLSQLRPVF 226          
The following BLAST results are available for this feature:
BLAST of CV885170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
ATOB_ECOLI1.171e-2234.84Acetyl-CoA acetyltransferase OS=Escherichia coli (... [more]
FADA_PSEAE1.997e-2231.093-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_PSEAB1.997e-2231.093-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_PSEA71.997e-2231.093-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
THIL_MYCTU5.810e-2235.89Probable acetyl-CoA acetyltransferase OS=Mycobacte... [more]
THIL_MYCBO5.810e-2235.89Probable acetyl-CoA acetyltransferase OS=Mycobacte... [more]
FADA_MARAV7.589e-2230.743-ketoacyl-CoA thiolase OS=Marinobacter aquaeolei ... [more]
FADA_SERP59.911e-2233.623-ketoacyl-CoA thiolase OS=Serratia proteamaculans... [more]
FADA_VIBVY1.294e-2131.603-ketoacyl-CoA thiolase OS=Vibrio vulnificus (stra... [more]
FADA_VIBVU1.294e-2131.603-ketoacyl-CoA thiolase OS=Vibrio vulnificus GN=fa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885170 ID=CV885170; Name=CV885170; organism=Citrus sinensis; type=EST; length=935bp
TTCAACCAGGAAAGAGTAAACAAGTCATCCCTGGTTCTCGATTCATCAGA
ACTCAAAAGCTTTCCATTGAAACCTGAGAGTGAGAGATGGAGAAAGCTCT
TCACAGACAGAGAATTCTGCTTCAACATCTTCAACCTTCTTCTTCCCAAA
CCAGTGACTCGCCGGCTATTTCTGCTTCGATTTGTTCGGCTGGTGAGGCT
GCAGGGTACCATAGGAAGCCTGCTTTTGATGATGATGTCGTCATTGTGGC
TGCATACCGTACTGCAATTTGCAAGGCGAAACGTGGAGGCTTCAAGGATA
CTCTTGCCGATGATCTGCTTGCACCTGTTCTAAAGGCAGTGATAGAGAAA
ACGAGGTTGAATCCCAGTGAAGTAGGGGATATAGTTGTTGGTACAGTCTT
GGCACCTGGCTCAACAAGAGCCATGGAGTGTAGGATGGCAGCGTTCTATG
CTGGTTTCCCTGAAACGGTGCCCCTCAGAACTGTCAACAGGCAGTGTTCA
TCTGGCTTGCAGGCGGTTGCTGATGTTGCAACAGCTATAAAAGCTGGATT
GTATGACATTGGTATTGCTGCTGGATTGGAAAGCATGACTGTGAATTCTA
TTAGCGTTGTTGGCCAAGTTAACCCCAAAGTGGAGATCTTTACTCAAGCT
CGGGACTGTCTGCTTCCTATGGGTATCACTTCTGAAAATGTTGCACAGAG
ATTTGGTGTGACACGACAAGAGCAAGACCTGGCTGCCGTTGAATCTCATA
GGCGTGCTGCTGCTGCAACTGCATCTGGCAAGTTTAAAGATGAAATTATT
CCAGTGAATACCAAGATTGTGGACCCAAAAACTGGAGTGGAGAAGCGTGT
CACAATTTCTGTGGATGATGGAATTCGACCAAACACAACAATTGCAGATC
TGGCTAAGCTGAAGCCTGCATTTAAAAAGGATGGG
back to top