CV885170

Overview
NameCV885170
Unique NameCV885170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_PSEMY (3-ketoacyl-CoA thiolase OS=Pseudomonas mendocina (strain ymp) GN=fadA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.294e-21
Identity = 73/238 (30.67%), Postives = 117/238 (49.16%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISV---DDGIRPNTTIADLAKLKPAFKKDG 935
            D VIV   RT + ++K G  ++T A+ + A ++  V+E+  +++P+EV D++ G V           RMA+     P T   +TV+R C S + A+     AI+ G  D+ +  G+E M    + ++  V+P   +   A      MG+T+E + +  G++R+ QD                GKFKDEIIP+         G ++   + V   D+ IRP TT+  LA LKPAF   G
Sbjct:    7 DAVIVDFGRTPMGRSKGGMHRNTRAETMSAHLISKVLERNAKIDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAGQTVSRLCGSSMSALHTAVQAIQTGNGDVFVVGGVEHM--GHVGMMHGVDPNPHLSLYAAKASGMMGLTAEMLGKMHGISREAQDAFGERSHRLAHKATVEGKFKDEIIPMQ--------GYDENGFLKVFDYDETIRPETTLESLATLKPAFNPKG 234          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: THIL_MYCLE (Probable acetyl-CoA acetyltransferase OS=Mycobacterium leprae GN=fadA4 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.691e-21
Identity = 85/250 (34.00%), Postives = 122/250 (48.80%), Query Frame = 3
Query:  240 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT--------------VNSISVVGQV--NPKVEIFTQARDCLLPMGITSE--NVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            VIV   RT I K   G  KD  A DL A  + A ++K  + PS V  +++G VL  G+ + M  R AA  AG    VP  T+N+ C SGL A+A     I+AG +D+ +A G ESMT                 +++V  +  +   ++FT       PMG  +E  N  ++F  TRQEQD                G F DE++PV+     P++  +  +  + D+GIR NT+   LA LKPAF+  G
Sbjct:    5 VIVTGARTPIGKLM-GSLKDFSASDLGAITIAAALKKANVAPSIVQYVIIGQVLTAGAGQ-MPARQAAVAAGIGWDVPALTINKMCLSGLDAIALADQLIRAGEFDVVVAGGQESMTKAPHLLMDSRSGYKYGDVTIVDHLAYDGLHDVFTNQ-----PMGALTEQRNDVEKF--TRQEQDEFAARSHQKAAAAWKDGVFADEVVPVSI----PQSKGDS-LQFTEDEGIRANTSAESLAGLKPAFRCGG 240          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_PSEHT (3-ketoacyl-CoA thiolase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=fadA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.691e-21
Identity = 71/229 (31.00%), Postives = 112/229 (48.91%), Query Frame = 3
Query:  240 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            VIV   RT + ++K G FK+  A+DL A ++K ++++   ++P+ + DI  G V           R AA  AG P +VP  TVNR C S +QA+ D A AI  G  D  +  G+E M    ++     +P   + T        MG+T+E +A   G++R++QD                G+F+ EI+ +     D        + +  D+ IRP TT+  L+KL+P F
Sbjct:    5 VIVDCIRTPMGRSKGGVFKNKRAEDLSAHLMKGLLDRNPAVDPASIDDIYWGCVQQTLEQGFNVARNAALLAGIPHSVPAVTVNRLCGSSMQALHDAARAIMTGAGDTYLIGGVEHMGHVPMTHGNDFHP--GLATSIAQAAGSMGLTAEYLATLHGISREQQDEFAYRSHQRAQAATVEGRFRREILAMEGHAADGSL-----ILVEDDEVIRPETTVEGLSKLRPVF 226          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_IDILO (3-ketoacyl-CoA thiolase OS=Idiomarina loihiensis GN=fadA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.691e-21
Identity = 73/231 (31.60%), Postives = 115/231 (49.78%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            D+VIV   RT + ++K G F+ T A+DL A ++K ++E+   ++P E+ DI  G V           R +A  AG P  V   TVNR C S +QA+ D   AI  G  DI +A G+E M    + +   ++    +          MG+T+E ++++FG+TR++QD                G+F  EI  +N    D +      V ++ D+ IRP TT   L++L+P F
Sbjct:    3 DIVIVDCIRTPMGRSKNGVFRHTRAEDLSAALMKGLLERNPEVDPEELEDIYWGCVQQTLEQGFNIARNSALIAGIPHKVAGVTVNRLCGSSMQALHDATRAIMNGDGDIFMAGGVEHM--GHVPMTHGIDFHPGMNKSVAKASGSMGMTAELLSRKFGITREQQDEFGARSHRKAHEATVEGRFAKEIYAMNGHNADGEL-----VRVTEDEVIRPETTAEGLSQLRPVF 226          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_PSEU5 (3-ketoacyl-CoA thiolase OS=Pseudomonas stutzeri (strain A1501) GN=fadA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.766e-21
Identity = 72/235 (30.64%), Postives = 116/235 (49.36%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            D VIV   RT + ++K G  ++T A+ + A ++  ++ +  +++P+EV D++ G V           RMA+     P T   +TV+R C S + A+     AI+    D+ +  G+E M    +S++  V+P  ++   A      MG+T+E + +  G+TR+ QD                GKFKDEIIP+       + G  K      D+ IRP TT+  LA+LKPAF   G
Sbjct:    7 DAVIVDFGRTPMGRSKGGMHRNTRAETMSAQLIDGLLARNPKIDPAEVEDVIWGCVNQTLEQGWNIARMASLLTRIPHTSAGQTVSRLCGSSMSALHTAVQAIQTNNGDVFVIGGVEHM--GHVSMMHGVDPNPQLSLHAAKASGMMGLTAEMLGKMHGITREAQDQFGYRSHQLAWKATQEGKFKDEIIPMEG---HDENGFLK--VFDYDETIRPETTLEGLAELKPAFNPKG 234          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: CATF_ACIAD (Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=catF PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.766e-21
Identity = 86/248 (34.68%), Postives = 120/248 (48.39%), Query Frame = 3
Query:  243 IVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQV------NPKVEIFTQARDCLLP----------MGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            IV A RT   +   GG     ADDL A  + A+IE+   +N ++V D++ G     G       RM+A  AG P  VP  TVNR C S L A+A  A AIKAG   + IA G+ESM+  +  V+G+         K+E  T     + P          M  T+ENVA++FG+ R++QD                G F  EI+PV    +  + G  + V I+ D+  R +TT+  LAKLK   K +G
Sbjct:    6 IVDAIRTPFGRYA-GGLAAVRADDLGAIPIAALIERNPSVNWAQVDDVIYGCANQAGEDNRNVGRMSALLAGLPVEVPATTVNRLCGSSLDAIAMAARAIKAGEAHLIIAGGVESMS-RAPYVMGKSEGAFGRTQKIEDTTMGWRFINPKLKAMYGVDTMPQTAENVAEQFGIQREDQDQFAYTSQQRTAAAQAKGYFAKEIVPVT---IPQRKG--EPVVIATDEHPRASTTLEGLAKLKGVVKPEG 246          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: PCAF_ACIAD (Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=pcaF PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.919e-21
Identity = 86/248 (34.68%), Postives = 119/248 (47.98%), Query Frame = 3
Query:  243 IVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQV------NPKVEIFTQARDCLLP----------MGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            IV A RT   +   GG     ADDL A  + A+IE+   +N ++V D++ G     G       RM+A  AG P  VP  TVNR C S L A+A  A AIKAG   + IA G+ESM+  +  V+G+         K+E  T     + P          M  T+ENVA++FG+ R++QD                G F  EI+PV    +  + G  + V I  D+  R +TT+  LAKLK   K +G
Sbjct:    6 IVDAIRTPFGRYA-GGLAAVRADDLGAIPIAALIERNPSVNWAQVDDVIYGCANQAGEDNRNVGRMSALLAGLPVEVPATTVNRLCGSSLDAIAMAARAIKAGEAHLIIAGGVESMS-RAPYVMGKSEGAFGRTQKIEDTTMGWRFINPKLKAMYGVDTMPQTAENVAEQFGIQREDQDQFAYTSQQRTAAAQAKGYFAKEIVPVT---IPQRKG--EPVVIDTDEHPRASTTLEGLAKLKGVVKPEG 246          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_PHOPR (3-ketoacyl-CoA thiolase OS=Photobacterium profundum GN=fadA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.919e-21
Identity = 73/232 (31.47%), Postives = 114/232 (49.14%), Query Frame = 3
Query:  231 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            ++VVIV   RT + ++K G F++  A+DL A ++K +I +  +L+P+ + DI  G V           R A+  AG P TV   TVNR C S +QA+ D   AI  G  +  I  G+E M    + +   V+    +          MG+T+E + +  G++RQ QD                G+FK+EI+P+       + G+ K      D+ IRP TT+  L+ L+PAF
Sbjct:    2 NNVVIVDCIRTPMGRSKAGAFRNVRAEDLSAHLMKGLISRNPQLDPNSIEDIYWGCVQQTLEQGFNVARNASLLAGIPHTVAATTVNRLCGSSMQALHDATRAIMVGDAETCIIGGVEHM--GHVPMNHGVDFHPGMSKSVAKAAGMMGLTAEMLGRMHGISRQMQDEFAARSHQRAHAATIEGRFKNEILPIEG---HDENGILK--LYDYDEVIRPETTVEGLSNLRPAF 226          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_PSYA2 (3-ketoacyl-CoA thiolase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=fadA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.390e-21
Identity = 69/230 (30.00%), Postives = 110/230 (47.83%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            DVVIV   R+A+ K K G F+   AD + A +++A++E+   +P +V DI+ G V           R     AG P+T   +TVNR C S +QA+   A  I  G  D+ I  G+E M    + ++  ++   E           MG+T+E + +   +TR+EQD                G+F +EII      ++      +    +VD+ IRP+ T+  + KL+PAF
Sbjct:    8 DVVIVDGVRSAMGKTKNGMFRHVRADSMSAELVRALVERNDFDPRDVEDIIWGCVNQTLEQGLNIGRNIGLLAGIPKTAGGQTVNRLCGSSMQALHTAAAQIMTGQGDVFIIGGVEHM--GHVGMMHGIDLNPEASKHYAKASNMMGLTAEMLGRMNNITREEQDAFGLESHRRAWAATTEGRFDNEIIG-----IEGHDAAGRLQLCTVDEVIRPDATMEQMQKLRPAF 230          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_MARMS (3-ketoacyl-CoA thiolase OS=Marinomonas sp. (strain MWYL1) GN=fadA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.390e-21
Identity = 65/232 (28.02%), Postives = 113/232 (48.71%), Query Frame = 3
Query:  231 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            +DVVI+ A R+ + K K G F++  A++L A ++K + ++   ++  +V D++ G V           R  +  AG P T   +TVNR C S + A+   A AI  G  D+ +  G+E M    + ++  V+    +        + MG+T+E + +  GV+R++QD                G+F +EI+ +     D       ++ + VD+ IRP T++  LAKL P F
Sbjct:    6 NDVVIIDAVRSPMGKTKNGVFRNVRAENLSAALVKELFKRNPNVDQKDVEDLIWGCVNQTLEQGFNMARAVSLLAGLPITCAAQTVNRLCGSSMSAIHTAAQAIMTGQGDVFVVGGVEHM--GHVGMMHGVDVNPALSKHMAKASMMMGVTAEMLGKMHGVSREDQDAFAVRSHRLAHEATLQGRFNNEIVSIEGHDAD-----GNKILVEVDEVIRPETSMESLAKLAPVF 230          
The following BLAST results are available for this feature:
BLAST of CV885170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
FADA_PSEMY1.294e-2130.673-ketoacyl-CoA thiolase OS=Pseudomonas mendocina (... [more]
THIL_MYCLE1.691e-2134.00Probable acetyl-CoA acetyltransferase OS=Mycobacte... [more]
FADA_PSEHT1.691e-2131.003-ketoacyl-CoA thiolase OS=Pseudoalteromonas halop... [more]
FADA_IDILO1.691e-2131.603-ketoacyl-CoA thiolase OS=Idiomarina loihiensis G... [more]
FADA_PSEU53.766e-2130.643-ketoacyl-CoA thiolase OS=Pseudomonas stutzeri (s... [more]
CATF_ACIAD3.766e-2134.68Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. ... [more]
PCAF_ACIAD4.919e-2134.68Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. ... [more]
FADA_PHOPR4.919e-2131.473-ketoacyl-CoA thiolase OS=Photobacterium profundu... [more]
FADA_PSYA28.390e-2130.003-ketoacyl-CoA thiolase OS=Psychrobacter arcticus ... [more]
FADA_MARMS8.390e-2128.023-ketoacyl-CoA thiolase OS=Marinomonas sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885170 ID=CV885170; Name=CV885170; organism=Citrus sinensis; type=EST; length=935bp
TTCAACCAGGAAAGAGTAAACAAGTCATCCCTGGTTCTCGATTCATCAGA
ACTCAAAAGCTTTCCATTGAAACCTGAGAGTGAGAGATGGAGAAAGCTCT
TCACAGACAGAGAATTCTGCTTCAACATCTTCAACCTTCTTCTTCCCAAA
CCAGTGACTCGCCGGCTATTTCTGCTTCGATTTGTTCGGCTGGTGAGGCT
GCAGGGTACCATAGGAAGCCTGCTTTTGATGATGATGTCGTCATTGTGGC
TGCATACCGTACTGCAATTTGCAAGGCGAAACGTGGAGGCTTCAAGGATA
CTCTTGCCGATGATCTGCTTGCACCTGTTCTAAAGGCAGTGATAGAGAAA
ACGAGGTTGAATCCCAGTGAAGTAGGGGATATAGTTGTTGGTACAGTCTT
GGCACCTGGCTCAACAAGAGCCATGGAGTGTAGGATGGCAGCGTTCTATG
CTGGTTTCCCTGAAACGGTGCCCCTCAGAACTGTCAACAGGCAGTGTTCA
TCTGGCTTGCAGGCGGTTGCTGATGTTGCAACAGCTATAAAAGCTGGATT
GTATGACATTGGTATTGCTGCTGGATTGGAAAGCATGACTGTGAATTCTA
TTAGCGTTGTTGGCCAAGTTAACCCCAAAGTGGAGATCTTTACTCAAGCT
CGGGACTGTCTGCTTCCTATGGGTATCACTTCTGAAAATGTTGCACAGAG
ATTTGGTGTGACACGACAAGAGCAAGACCTGGCTGCCGTTGAATCTCATA
GGCGTGCTGCTGCTGCAACTGCATCTGGCAAGTTTAAAGATGAAATTATT
CCAGTGAATACCAAGATTGTGGACCCAAAAACTGGAGTGGAGAAGCGTGT
CACAATTTCTGTGGATGATGGAATTCGACCAAACACAACAATTGCAGATC
TGGCTAAGCTGAAGCCTGCATTTAAAAAGGATGGG
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