CV885170

Overview
NameCV885170
Unique NameCV885170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_ALISL (3-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida (strain LFI1238) GN=fadA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.869e-20
Identity = 71/231 (30.74%), Postives = 114/231 (49.35%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            +VVIV   RT + ++K G F+ T A+DL A ++K ++E+   ++P+++ DI  G V           R A+  AG P+++   TVNR C S +QA+ D + AI  G  DI I  G+E M    + +   V+    +          MG+T+E + +  G++R++QD                G F  EI+P+     +    + K      D+ IRP TT+  LA L+PAF
Sbjct:    3 NVVIVDCIRTPMGRSKNGVFRHTRAEDLSAHLMKGLLERNPNVDPNQIEDIYWGCVQQTLEQGFNIARNASLLAGLPKSIAATTVNRLCGSSMQALHDASRAIMVGDADICIIGGVEHM--GHVPMNHGVDFHSGLSKNVAKASGMMGLTAEMLGKMHGISREQQDAFAFASHQKAHRATIEGHFDSEILPMEGHDENGALTLVKH-----DEVIRPETTLEGLAALRPAF 226          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_ENTS8 (3-ketoacyl-CoA thiolase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=fadA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.441e-20
Identity = 75/232 (32.33%), Postives = 112/232 (48.28%), Query Frame = 3
Query:  231 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            + VVIV A RT + ++K G F+   A+DL A ++++++ +  +L  S + DI  G V           R AA  A  P +VP  TVNR C S +QA+ D A  I  G   + +  G+E M    + +   V+    +          MG+T+E +++  G++R+ QD                G FK EIIP +    D   GV KR     D+ IRP TT   L++LKPAF
Sbjct:    2 EKVVIVDAIRTPMGRSKGGAFRQVRAEDLSAHLMRSLLSRNPQLEASAIDDIYWGCVQQTLEQGFNIARNAALLAEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDASVCLVGGVEHM--GHVPMNHGVDFHPGLSRNVAKAAGMMGLTAEMLSRMHGISREMQDAFAARSHQRAWAATQAGHFKQEIIPTSGHDAD---GVLKR--YDFDEVIRPETTAEGLSQLKPAF 226          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_AERHH (3-ketoacyl-CoA thiolase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.441e-20
Identity = 73/231 (31.60%), Postives = 114/231 (49.35%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            DVVIV   RT + ++K G F++  A+DL A ++K+++ +   L+P+E+ DI  G V           R AA  AG P+ V   TVNR C S +QA+ D + AI+ G  DI I  G+E M    +S     +P +         +  MG+T+E + +  G++RQ+QD                G+F  EI+      ++       R     D+ IRP TT+  L++L+P F
Sbjct:    3 DVVIVDCIRTPMGRSKGGAFRNVRAEDLSAHLMKSILLRNPNLDPNEIEDIYWGCVQQTLEQGFNIARNAALLAGIPKQVGAVTVNRLCGSSMQALHDASRAIQVGDGDIFIIGGVEHMGHVPMSHGVDFHPGMAKSVAKASGM--MGLTAEMLGKLHGISRQQQDEFAARSHRRAHAATVEGRFAKEIVG-----LEGHDASGARFFYDYDEVIRPETTVETLSQLRPVF 226          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: THIM_HUMAN (3-ketoacyl-CoA thiolase, mitochondrial OS=Homo sapiens GN=ACAA2 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 3.188e-20
Identity = 75/244 (30.74%), Postives = 108/244 (44.26%), Query Frame = 3
Query:  237 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG-QVNPKVEIFTQARDCL----------LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            V +VAA RT    A  G  KD  A DL     KA +   +++P  V  +++G VL   S      R      G P+  P  T+NR C SG Q++ +    I     ++ +  G ESM+     V   +   K+    +  D L          LPM +T+EN+A +  ++R+E D                G F DE+ P+  K    K G   + T+ VD+  RP TT+  L KL P FKKDG
Sbjct:    7 VFVVAAKRTPF-GAYGGLLKDFTATDLSEFAAKAALSAGKVSPETVDSVIMGNVLQSSSDAIYLARHVGLRVGIPKETPALTINRLCGSGFQSIVNGCQEICVKEAEVVLCGGTESMSQAPYCVRNVRFGTKLGSDIKLEDSLWVSLTDQHVQLPMAMTAENLAVKHKISREECDKYALQSQQRWKAANDAGYFNDEMAPIEVK---TKKG---KQTMQVDEHARPQTTLEQLQKLPPVFKKDG 243          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_PSYWF (3-ketoacyl-CoA thiolase OS=Psychrobacter sp. (strain PRwf-1) GN=fadA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.188e-20
Identity = 70/231 (30.30%), Postives = 117/231 (50.65%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKV-EIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            DVVIV   RTA+ K+K G F++  AD + A +++A++++   + +EV DI+ G V           R     A  P+T   +TVNR C S +QA+   A  I     D+ I  G+E M    +     +NP+  + + +A +    MG+T+E + +  G+TR++QD                G+F +EII +     + +  +      +VD+ IRP+T++  LAKL+P F
Sbjct:    8 DVVIVDGVRTAMGKSKNGMFRNVRADSMSAELVRALVKRNDFDTNEVEDIIWGCVNQTLEQGMNIGRNIGLLADIPKTAGGQTVNRLCGSSMQALHTAAAQIMTNQGDVFIIGGVEHMGHVGMMHGIDINPEASKHYAKASNM---MGLTAEMLGRMNGITREQQDEFGYESHRRAWAATQAGRFDNEIIGIEGHDAEGRLQL-----CTVDEVIRPDTSMESLAKLRPVF 230          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_KLEP7 (3-ketoacyl-CoA thiolase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=fadA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.188e-20
Identity = 76/232 (32.76%), Postives = 111/232 (47.84%), Query Frame = 3
Query:  231 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            + VVIV A RT + ++K G F+   A+DL A ++++++ +   L  S + DI  G V           R AA  A  P +VP  TVNR C S +QA+ D A  I  G   + +  G+E M    +S     +P +            MG+T+E +A+  G++R+ QD                G FK EIIP      D   GV K  + + D+ IRP TT+  L+ LKPAF
Sbjct:    2 EQVVIVDAIRTPMGRSKGGAFRHVRAEDLSAHLMRSLLSRNPSLEASAIDDIYWGCVQQTLEQGFNIARNAALLAEIPHSVPANTVNRLCGSSMQALHDAARMIMTGDAGVCLIGGVEHMGHVPMSHGVDFHPGLS--RNVAKAAGMMGLTAEMLARLHGISREMQDQFAARSHARAWAATQSGAFKAEIIPTGGHDAD---GVLK--SFNYDEVIRPETTVETLSTLKPAF 226          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_ERWCT (3-ketoacyl-CoA thiolase OS=Erwinia carotovora subsp. atroseptica GN=fadA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.164e-20
Identity = 77/232 (33.19%), Postives = 117/232 (50.43%), Query Frame = 3
Query:  231 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEK-TRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            + VVIV A RT + ++K G F+   A+DL A ++++++ + T L+  E+ DI  G V           R AA  A  P +VP  TVNR C S +QA+ D A AI  G  ++ +  G+E M    ++     +P +   T A+   + MG+T+E +A+   ++R+ QD                G F+ EI+P      D   G  +R     D+ IRP+TTI  LA LKPAF
Sbjct:    2 EKVVIVDAVRTPMGRSKGGAFRQVRAEDLSAHLMRSLLSRNTALDAREIDDIYWGCVQQALEQGFNVARNAALLAEIPVSVPATTVNRLCGSSMQALHDAARAIMVGDANVCLIGGVEHMGHVPMNHGVDFHPGLS-RTIAKAAGM-MGLTAEMLARMHNISREMQDQFAARSHQRAYHATQSGAFRHEIVPTAGHDAD---GALQR--FDYDEVIRPDTTIDSLAALKPAF 226          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_VIBFM (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain MJ11) GN=fadA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.438e-20
Identity = 72/231 (31.17%), Postives = 116/231 (50.22%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            +VVIV   RT + ++K G F+ T A+DL A ++K ++++   ++P+++ DI  G V           R +A  AG P+++   TVNR C S +QA+ D + AI  G  +I I  G+E M    + +   V+    +          MG+T+E + +  G++R++QD                G F  EI+P+       + GV   VT   D+ IRP TT+  LA L+PAF
Sbjct:    3 NVVIVDCIRTPMGRSKNGVFRYTRAEDLSAHLMKGLLKRNPSVDPNDIEDIYWGCVQQTLEQGFNIARNSALLAGLPQSIAATTVNRLCGSSMQALHDASRAIMVGDAEICIIGGVEHM--GHVPMNHGVDFHSGLSKSVAKASGMMGLTAEMLGKMHGISREQQDAFALASHQKAHKATIEGYFDSEILPIEG---HDENGVLTLVT--HDEVIRPETTLEGLAALRPAF 226          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: THIM_PONAB (3-ketoacyl-CoA thiolase, mitochondrial OS=Pongo abelii GN=ACAA2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.103e-20
Identity = 73/244 (29.92%), Postives = 110/244 (45.08%), Query Frame = 3
Query:  237 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM--------TVNSISVVG---QVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            V +VAA RT    A  G  KD  A DL     KA +   +++P  V  +++G VL   S      R      G P+  P  T+NR C SG Q++ +    I     ++ +  G ESM        TV   + +G   ++   + +    +   LP+ +T+EN+A +  ++R+E D                G F DE+ P+  K    K G   + T+ VD+  RP TT+  L KL P FKKDG
Sbjct:    7 VFVVAAKRTPF-GAYGGLLKDFTATDLSEFAAKAALSAGKVSPETVDSVIMGNVLQSSSDAIYLARHVGLRVGIPKETPALTINRLCGSGFQSIVNGCQEICVKEAEVVLCGGTESMSQAPYCVRTVRFGTKLGSDIKLEDSLWVSLTDQHVQLPIAMTAENLAVKHKISREECDKYALQSQQRWKAANDAGYFNDEMAPIEVK---TKKG---KQTMQVDEHARPQTTLEQLQKLPPVFKKDG 243          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: THIL_PARDE (Acetyl-CoA acetyltransferase OS=Paracoccus denitrificans GN=phaA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.103e-20
Identity = 80/244 (32.79%), Postives = 118/244 (48.36%), Query Frame = 3
Query:  240 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVL--APGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNS----ISVVGQVNPKVEIFTQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            VIV+A RT +  +  G F +  A +L A VLKAV+E+  ++PSEV + ++G VL  A G   A   R A    G P       +N+ C SGL+ VA  A  +  G   I +A G ESM++      I+   ++     + T  +D L        MG T+ENVA ++ ++R EQD                GKF DEI+PV  K    +T       +  D+ IR   T+  +  ++PAF K+G
Sbjct:    5 VIVSAARTPV-GSFLGSFANLPAHELGAIVLKAVVERAGIDPSEVSETILGQVLTAAQGQNPA---RQAHIKVGLPRESAAWVINQVCGSGLRTVALAAQQVLLGDARIVVAGGQESMSLAPHAAYIAPGQKMGDMKMLDTMIKDGLWDAFNDYHMGTTAENVAGKWEISRAEQDQFAVASQNKAEAAQKAGKFADEIVPVTIKSRKGET------VVDADEYIRHGATLEAMENVRPAFSKEG 238          
The following BLAST results are available for this feature:
BLAST of CV885170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
FADA_ALISL1.869e-2030.743-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida ... [more]
FADA_ENTS82.441e-2032.333-ketoacyl-CoA thiolase OS=Enterobacter sakazakii ... [more]
FADA_AERHH2.441e-2031.603-ketoacyl-CoA thiolase OS=Aeromonas hydrophila su... [more]
THIM_HUMAN3.188e-2030.743-ketoacyl-CoA thiolase, mitochondrial OS=Homo sap... [more]
FADA_PSYWF3.188e-2030.303-ketoacyl-CoA thiolase OS=Psychrobacter sp. (stra... [more]
FADA_KLEP73.188e-2032.763-ketoacyl-CoA thiolase OS=Klebsiella pneumoniae s... [more]
FADA_ERWCT4.164e-2033.193-ketoacyl-CoA thiolase OS=Erwinia carotovora subs... [more]
FADA_VIBFM5.438e-2031.173-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
THIM_PONAB7.103e-2029.923-ketoacyl-CoA thiolase, mitochondrial OS=Pongo ab... [more]
THIL_PARDE7.103e-2032.79Acetyl-CoA acetyltransferase OS=Paracoccus denitri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885170 ID=CV885170; Name=CV885170; organism=Citrus sinensis; type=EST; length=935bp
TTCAACCAGGAAAGAGTAAACAAGTCATCCCTGGTTCTCGATTCATCAGA
ACTCAAAAGCTTTCCATTGAAACCTGAGAGTGAGAGATGGAGAAAGCTCT
TCACAGACAGAGAATTCTGCTTCAACATCTTCAACCTTCTTCTTCCCAAA
CCAGTGACTCGCCGGCTATTTCTGCTTCGATTTGTTCGGCTGGTGAGGCT
GCAGGGTACCATAGGAAGCCTGCTTTTGATGATGATGTCGTCATTGTGGC
TGCATACCGTACTGCAATTTGCAAGGCGAAACGTGGAGGCTTCAAGGATA
CTCTTGCCGATGATCTGCTTGCACCTGTTCTAAAGGCAGTGATAGAGAAA
ACGAGGTTGAATCCCAGTGAAGTAGGGGATATAGTTGTTGGTACAGTCTT
GGCACCTGGCTCAACAAGAGCCATGGAGTGTAGGATGGCAGCGTTCTATG
CTGGTTTCCCTGAAACGGTGCCCCTCAGAACTGTCAACAGGCAGTGTTCA
TCTGGCTTGCAGGCGGTTGCTGATGTTGCAACAGCTATAAAAGCTGGATT
GTATGACATTGGTATTGCTGCTGGATTGGAAAGCATGACTGTGAATTCTA
TTAGCGTTGTTGGCCAAGTTAACCCCAAAGTGGAGATCTTTACTCAAGCT
CGGGACTGTCTGCTTCCTATGGGTATCACTTCTGAAAATGTTGCACAGAG
ATTTGGTGTGACACGACAAGAGCAAGACCTGGCTGCCGTTGAATCTCATA
GGCGTGCTGCTGCTGCAACTGCATCTGGCAAGTTTAAAGATGAAATTATT
CCAGTGAATACCAAGATTGTGGACCCAAAAACTGGAGTGGAGAAGCGTGT
CACAATTTCTGTGGATGATGGAATTCGACCAAACACAACAATTGCAGATC
TGGCTAAGCTGAAGCCTGCATTTAAAAAGGATGGG
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