CV885170

Overview
NameCV885170
Unique NameCV885170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_ECO24 (3-ketoacyl-CoA thiolase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=fadA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.103e-20
Identity = 75/232 (32.33%), Postives = 113/232 (48.71%), Query Frame = 3
Query:  231 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            + VVIV A RT + ++K G F++  A+DL A ++++++ +   L  + + DI  G V           R AA  A  P +VP  TVNR C S +QA+ D A  I +G     +  G+E M    +S     +P +            MG+T+E +A+  G++R+ QD                G FK+EIIP      D   GV K+   + D+ IRP TT+  LA L+PAF
Sbjct:    2 EQVVIVDAIRTPMSRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMSGDAQACLVGGVEHMGHVPMSHGVDFHPGLS--RNVAKAAGMMGLTAEMLARMHGISREMQDAFAARSHARAWAATQSGAFKNEIIPTGGHDAD---GVLKQ--FNYDEVIRPETTVEALATLRPAF 226          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_YERPS (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis GN=fadA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.277e-20
Identity = 78/232 (33.62%), Postives = 116/232 (50.00%), Query Frame = 3
Query:  231 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            ++VVI+ A RT + ++K G F+   A+DL A +++AVI +   LN +E+ DI  G V           R A+  A  P +VP  TVNR C S +QA+ D A AI  G   I +  G+E M    ++     +P +   T A+   + MG+T+E +A+   ++RQ QD                G F  EI+  N    +   GV KR     D+ IRP T ++ LA L+PAF
Sbjct:    2 ENVVIIDAVRTPMGRSKGGAFRHVRAEDLSAHLMRAVISRNPGLNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAKISLIGGVEHMGHVPMNHGVDFHPGMG-RTVAKAAGM-MGLTAEMLAKIHNISRQSQDEFAFRSHQRAYAATQAGHFAKEIVATNGHDAE---GVLKR--FDFDEVIRPETNLSGLAALRPAF 226          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_YERPP (3-ketoacyl-CoA thiolase OS=Yersinia pestis (strain Pestoides F) GN=fadA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.277e-20
Identity = 78/232 (33.62%), Postives = 116/232 (50.00%), Query Frame = 3
Query:  231 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            ++VVI+ A RT + ++K G F+   A+DL A +++AVI +   LN +E+ DI  G V           R A+  A  P +VP  TVNR C S +QA+ D A AI  G   I +  G+E M    ++     +P +   T A+   + MG+T+E +A+   ++RQ QD                G F  EI+  N    +   GV KR     D+ IRP T ++ LA L+PAF
Sbjct:    2 ENVVIIDAVRTPMGRSKGGAFRHVRAEDLSAHLMRAVISRNPGLNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAKISLIGGVEHMGHVPMNHGVDFHPGMG-RTVAKAAGM-MGLTAEMLAKIHNISRQSQDEFAFRSHQRAYAATQAGHFAKEIVATNGHDAE---GVLKR--FDFDEVIRPETNLSGLAALRPAF 226          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_YERPN (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fadA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.277e-20
Identity = 78/232 (33.62%), Postives = 116/232 (50.00%), Query Frame = 3
Query:  231 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            ++VVI+ A RT + ++K G F+   A+DL A +++AVI +   LN +E+ DI  G V           R A+  A  P +VP  TVNR C S +QA+ D A AI  G   I +  G+E M    ++     +P +   T A+   + MG+T+E +A+   ++RQ QD                G F  EI+  N    +   GV KR     D+ IRP T ++ LA L+PAF
Sbjct:    2 ENVVIIDAVRTPMGRSKGGAFRHVRAEDLSAHLMRAVISRNPGLNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAKISLIGGVEHMGHVPMNHGVDFHPGMG-RTVAKAAGM-MGLTAEMLAKIHNISRQSQDEFAFRSHQRAYAATQAGHFAKEIVATNGHDAE---GVLKR--FDFDEVIRPETNLSGLAALRPAF 226          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_YERPE (3-ketoacyl-CoA thiolase OS=Yersinia pestis GN=fadA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.277e-20
Identity = 78/232 (33.62%), Postives = 116/232 (50.00%), Query Frame = 3
Query:  231 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            ++VVI+ A RT + ++K G F+   A+DL A +++AVI +   LN +E+ DI  G V           R A+  A  P +VP  TVNR C S +QA+ D A AI  G   I +  G+E M    ++     +P +   T A+   + MG+T+E +A+   ++RQ QD                G F  EI+  N    +   GV KR     D+ IRP T ++ LA L+PAF
Sbjct:    2 ENVVIIDAVRTPMGRSKGGAFRHVRAEDLSAHLMRAVISRNPGLNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAKISLIGGVEHMGHVPMNHGVDFHPGMG-RTVAKAAGM-MGLTAEMLAKIHNISRQSQDEFAFRSHQRAYAATQAGHFAKEIVATNGHDAE---GVLKR--FDFDEVIRPETNLSGLAALRPAF 226          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_YERPA (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fadA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.277e-20
Identity = 78/232 (33.62%), Postives = 116/232 (50.00%), Query Frame = 3
Query:  231 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            ++VVI+ A RT + ++K G F+   A+DL A +++AVI +   LN +E+ DI  G V           R A+  A  P +VP  TVNR C S +QA+ D A AI  G   I +  G+E M    ++     +P +   T A+   + MG+T+E +A+   ++RQ QD                G F  EI+  N    +   GV KR     D+ IRP T ++ LA L+PAF
Sbjct:    2 ENVVIIDAVRTPMGRSKGGAFRHVRAEDLSAHLMRAVISRNPGLNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAKISLIGGVEHMGHVPMNHGVDFHPGMG-RTVAKAAGM-MGLTAEMLAKIHNISRQSQDEFAFRSHQRAYAATQAGHFAKEIVATNGHDAE---GVLKR--FDFDEVIRPETNLSGLAALRPAF 226          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_YERP3 (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fadA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.277e-20
Identity = 78/232 (33.62%), Postives = 116/232 (50.00%), Query Frame = 3
Query:  231 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            ++VVI+ A RT + ++K G F+   A+DL A +++AVI +   LN +E+ DI  G V           R A+  A  P +VP  TVNR C S +QA+ D A AI  G   I +  G+E M    ++     +P +   T A+   + MG+T+E +A+   ++RQ QD                G F  EI+  N    +   GV KR     D+ IRP T ++ LA L+PAF
Sbjct:    2 ENVVIIDAVRTPMGRSKGGAFRHVRAEDLSAHLMRAVISRNPGLNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAKISLIGGVEHMGHVPMNHGVDFHPGMG-RTVAKAAGM-MGLTAEMLAKIHNISRQSQDEFAFRSHQRAYAATQAGHFAKEIVATNGHDAE---GVLKR--FDFDEVIRPETNLSGLAALRPAF 226          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: YQEF_ECOLI (Probable acetyl-CoA acetyltransferase OS=Escherichia coli (strain K12) GN=yqeF PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.212e-19
Identity = 76/245 (31.02%), Postives = 119/245 (48.57%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT-----VNSISVVGQVNPKVEIFTQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDG 935
            DVVIV A RT I    RG      A +L + V+KA+IE+T +    V ++++G VL  G+ +    R +A   G P +V   T+N  C SGL+A+     AI+ G  DI IA G E+M+     +       Q+     + +   D L        +G+T+EN+A+ +G++RQ QD                G+FKDEI+PV T+         + + +  D+  R + +   LA+L P+F   G
Sbjct:    3 DVVIVGALRTPI-GCFRGALAGHSAVELGSLVVKALIERTGVPAYAVDEVILGQVLTAGAGQN-PARQSAIKGGLPNSVSAITINDVCGSGLKALHLATQAIQCGEADIVIAGGQENMSRAPHVLTDSRTGAQLGNSQLVDSLVHDGLWDAFNDYHIGVTAENLAREYGISRQLQDAYALSSQQKARAAIDAGRFKDEIVPVMTQ------SNGQTLVVDTDEQPRTDASAEGLARLNPSFDSLG 239          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_AERS4 (3-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (strain A449) GN=fadA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.212e-19
Identity = 72/231 (31.17%), Postives = 113/231 (48.92%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            DVVIV   RT + ++K G F++  A+DL A ++ +++ +   L+P+E+ DI  G V           R AA  AG P+ V   TVNR C S +QA+ D + AI+ G  DI I  G+E M    +S     +P +         +  MG+T+E + +  G++RQ+QD                G+F  EI+      ++       R     D+ IRP TT+  L++L+P F
Sbjct:    3 DVVIVDCIRTPMGRSKGGAFRNVRAEDLSAHLMSSILLRNPNLDPNEIEDIYWGCVQQTLEQGFNIARNAALLAGIPKQVGAVTVNRLCGSSMQALHDASRAIQVGDGDIFIIGGVEHMGHVPMSHGVDFHPGMAKSVAKASGM--MGLTAEMLGKLHGISRQQQDEFAARSHRRAYAATVEGRFAREIVG-----LEGHDASGARFFYDYDEVIRPETTVETLSQLRPVF 226          
BLAST of CV885170 vs. ExPASy Swiss-Prot
Match: FADA_VIBF1 (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadA PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.582e-19
Identity = 71/231 (30.74%), Postives = 115/231 (49.78%), Query Frame = 3
Query:  234 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 923
            +VVIV   RT + ++K G F+ T A+DL A ++K ++++   ++P+++ DI  G V           R +A  AG P+++   TVNR C S +QA+ D + AI  G  +I I  G+E M    + +   V+    +          MG+T+E + +  G++R++QD                G F  EI+P+       + G    VT   D+ IRP TT+  LA L+PAF
Sbjct:    3 NVVIVDCIRTPMGRSKNGVFRHTRAEDLSAHLMKGLLKRNPSVDPNDIEDIYWGCVQQTLEQGFNIARNSALLAGLPQSIAATTVNRLCGSSMQALHDASRAIMVGDAEICIIGGVEHM--GHVPMNHGVDFHSGLSKSVAKASGMMGLTAEMLGKMHGISREQQDAFALASHQKAHKATIEGYFDSEILPMEG---HDENGALTLVT--HDEVIRPETTLEGLAALRPAF 226          
The following BLAST results are available for this feature:
BLAST of CV885170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
FADA_ECO247.103e-2032.333-ketoacyl-CoA thiolase OS=Escherichia coli O139:H... [more]
FADA_YERPS9.277e-2033.623-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul... [more]
FADA_YERPP9.277e-2033.623-ketoacyl-CoA thiolase OS=Yersinia pestis (strain... [more]
FADA_YERPN9.277e-2033.623-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant... [more]
FADA_YERPE9.277e-2033.623-ketoacyl-CoA thiolase OS=Yersinia pestis GN=fadA... [more]
FADA_YERPA9.277e-2033.623-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant... [more]
FADA_YERP39.277e-2033.623-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul... [more]
YQEF_ECOLI1.212e-1931.02Probable acetyl-CoA acetyltransferase OS=Escherich... [more]
FADA_AERS41.212e-1931.173-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (... [more]
FADA_VIBF11.582e-1930.743-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885170 ID=CV885170; Name=CV885170; organism=Citrus sinensis; type=EST; length=935bp
TTCAACCAGGAAAGAGTAAACAAGTCATCCCTGGTTCTCGATTCATCAGA
ACTCAAAAGCTTTCCATTGAAACCTGAGAGTGAGAGATGGAGAAAGCTCT
TCACAGACAGAGAATTCTGCTTCAACATCTTCAACCTTCTTCTTCCCAAA
CCAGTGACTCGCCGGCTATTTCTGCTTCGATTTGTTCGGCTGGTGAGGCT
GCAGGGTACCATAGGAAGCCTGCTTTTGATGATGATGTCGTCATTGTGGC
TGCATACCGTACTGCAATTTGCAAGGCGAAACGTGGAGGCTTCAAGGATA
CTCTTGCCGATGATCTGCTTGCACCTGTTCTAAAGGCAGTGATAGAGAAA
ACGAGGTTGAATCCCAGTGAAGTAGGGGATATAGTTGTTGGTACAGTCTT
GGCACCTGGCTCAACAAGAGCCATGGAGTGTAGGATGGCAGCGTTCTATG
CTGGTTTCCCTGAAACGGTGCCCCTCAGAACTGTCAACAGGCAGTGTTCA
TCTGGCTTGCAGGCGGTTGCTGATGTTGCAACAGCTATAAAAGCTGGATT
GTATGACATTGGTATTGCTGCTGGATTGGAAAGCATGACTGTGAATTCTA
TTAGCGTTGTTGGCCAAGTTAACCCCAAAGTGGAGATCTTTACTCAAGCT
CGGGACTGTCTGCTTCCTATGGGTATCACTTCTGAAAATGTTGCACAGAG
ATTTGGTGTGACACGACAAGAGCAAGACCTGGCTGCCGTTGAATCTCATA
GGCGTGCTGCTGCTGCAACTGCATCTGGCAAGTTTAAAGATGAAATTATT
CCAGTGAATACCAAGATTGTGGACCCAAAAACTGGAGTGGAGAAGCGTGT
CACAATTTCTGTGGATGATGGAATTCGACCAAACACAACAATTGCAGATC
TGGCTAAGCTGAAGCCTGCATTTAAAAAGGATGGG
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