EH406526

Overview
NameEH406526
Unique NameEH406526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_GEOSM (Ribosomal RNA large subunit methyltransferase H OS=Geobacter sp. (strain M21) GN=rlmH PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 46/151 (30.46%), Postives = 71/151 (47.02%), Query Frame = 1
Query:   16 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--------------------PKNTGDVKAQIKDEDMAVMNIIS----SDDWGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 396
            ++++ VGK +   V+  ++EY G+++ Y  +E L+ R                      PK    V    + E M    + S    + D G   + F IGG YG     R +A  SI LS M L HQ+  + L+EQ+YR +TI+ G+ YHH
Sbjct:    3 LKLLWVGKTQESWVRTGIEEYAGRIRRYAPLEILEAREEKGAQAAAMRERECERLAKLIPKGGRLVLLDERGEAMTSPELASFLSKNRDQGTQDLVFAIGGAYGFTDAFRSQAFKSISLSRMTLTHQMVRVFLLEQIYRGFTIINGEPYHH 153          
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_BACHK (Ribosomal RNA large subunit methyltransferase H OS=Bacillus thuringiensis subsp. konkukian GN=rlmH PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 46/156 (29.49%), Postives = 80/156 (51.28%), Query Frame = 1
Query:   16 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI--KDEDMAVMNIISSDD--------------------------WGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 393
            I +I++GK +   ++  + EY+ +L  Y KVE ++L     P+N  + +  I  + E + +++ IS D                           +G S+++F IGG  G   ++ +R+N S+  S M L HQ+  LVL+EQ+YRS+ I +G+ YH
Sbjct:    3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIRILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSNESLSFSKMTLPHQLMRLVLLEQVYRSFRINRGEPYH 158          
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_BACCN (Ribosomal RNA large subunit methyltransferase H OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=rlmH PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 46/156 (29.49%), Postives = 80/156 (51.28%), Query Frame = 1
Query:   16 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI--KDEDMAVMNIISSDD--------------------------WGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 393
            I +I++GK +   ++  + EY+ +L  Y KVE ++L     P+N  + +  I  + E + +++ IS D                           +G S+I+F IGG  G   ++ +R+N S+  S M L HQ+  LVL+EQ+YR++ I +G+ YH
Sbjct:    3 ISIISIGKLKEKYLKQGIAEYLKRLSSYAKVEVIELPDEKAPENLSEAEMLIVKEKEGVRILDKISDDTHVIALAIEGKQKSSEQFAESLDCLATYGKSKIAFVIGGSLGLSTEVMKRSNESLSFSKMTLPHQLMRLVLLEQIYRAFRINRGEPYH 158          
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_BREBN (Ribosomal RNA large subunit methyltransferase H OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rlmH PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 44/158 (27.85%), Postives = 74/158 (46.84%), Query Frame = 1
Query:   10 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNP---------------KNTGDVKAQIKDEDMAVMNIISSDDW---------------GASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 393
            + I +ITVGK +   ++  +DEY  +L  YCK++ +++                   K    + AQIK +   +   I    W               G S+++F IGG  G   ++ +RA+  +  S M   HQ+  LVL+EQ+YR++ I +G+ YH
Sbjct:    1 MQISIITVGKLKEKYLREGIDEYSKRLSAYCKLQVIEVNDEKAPEEMSAAEMEQVKRKEGERILAQIKQDQYVIALAIDGQMWSSEKLSAEMDKLALHGRSQVAFVIGGSLGLADQVLKRADALLSFSKMTFPHQLVRLVLLEQVYRAFRISRGEPYH 158          
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_GEMAT (Ribosomal RNA large subunit methyltransferase H OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=rlmH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 41/151 (27.15%), Postives = 78/151 (51.66%), Query Frame = 1
Query:   16 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKN--TGDVKAQIKDEDM-----AVMNIISSDDWG------------------ASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 393
            + ++ +G+ R  G+   + +Y G+  +Y  ++ ++++  P    + DV  + + E +     A   +++ D  G                  A  ++F IGG +G GP +RERAN  + L+   L H++A +V+ EQLYR+ TI++G+ YH
Sbjct:    3 VALLVIGRPRHAGLADAIRDYEGRAAHYWPLDVIEVKEEPGRNLSADVVREREAERLVARLPADAVVVACDPGGVTMDSAQFARWLQEQRESARNVAFVIGGAHGLGPAVRERANRRLSLAPWTLPHEVARMVMAEQLYRAGTIIRGEPYH 153          
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_DESPS (Ribosomal RNA large subunit methyltransferase H OS=Desulfotalea psychrophila GN=rlmH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 41/148 (27.70%), Postives = 74/148 (50.00%), Query Frame = 1
Query:   22 VITVGKKRSLGVQLVVDEYIGKLKYYCKVE--------------------DLQLRSNPKNTGDVKAQIKDEDMA----VMNIISSDDWGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 393
            ++ +GK +   +   V+EY+ +L++Y KVE                    +L L + P N   V   ++ ++++       +I+ ++ G   + + IGGP G  P +  RA++ +  S M   H +  L+LVEQLYR++TI  G+ YH
Sbjct:    5 ILLLGKIKDSFIAEGVEEYLKRLQHYTKVELRYLKGKGKKGALLSTEQEGELLLANVPANAFVVALDVQGKNLSSEGLAEQVINWENTGTRSVCYLIGGPLGLSPSLLARADLRLSFSKMTFTHDMVRLLLVEQLYRAYTIKAGEKYH 152          
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_BACCZ (Ribosomal RNA large subunit methyltransferase H OS=Bacillus cereus (strain ZK / E33L) GN=rlmH PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 45/156 (28.85%), Postives = 80/156 (51.28%), Query Frame = 1
Query:   16 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI--KDEDMAVMNIISSDD--------------------------WGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 393
            I +I++GK +   ++  + EY+ +L  Y KVE ++L     P+N  + +  I  + E + +++ IS D                           +G S+++F IGG  G   ++ +R+N S+  S M L HQ+  LVL+EQ+YR++ I +G+ YH
Sbjct:    3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIRILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSNESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158          
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_BACCR (Ribosomal RNA large subunit methyltransferase H OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rlmH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 45/156 (28.85%), Postives = 80/156 (51.28%), Query Frame = 1
Query:   16 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI--KDEDMAVMNIISSDD--------------------------WGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 393
            I +I++GK +   ++  + EY+ +L  Y KVE ++L     P+N  + +  I  + E + +++ IS D                           +G S+++F IGG  G   ++ +R+N S+  S M L HQ+  LVL+EQ+YR++ I +G+ YH
Sbjct:    3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIRILDKISDDTHVIALAIEGKQKSSEEFAISLDRLATYGKSKVAFVIGGSLGLSSEVMKRSNESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158          
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_BACC4 (Ribosomal RNA large subunit methyltransferase H OS=Bacillus cereus (strain B4264) GN=rlmH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 45/156 (28.85%), Postives = 80/156 (51.28%), Query Frame = 1
Query:   16 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI--KDEDMAVMNIISSDD--------------------------WGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 393
            I +I++GK +   ++  + EY+ +L  Y KVE ++L     P+N  + +  I  + E + +++ IS D                           +G S+++F IGG  G   ++ +R+N S+  S M L HQ+  LVL+EQ+YR++ I +G+ YH
Sbjct:    3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIRILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSNESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158          
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_BACC2 (Ribosomal RNA large subunit methyltransferase H OS=Bacillus cereus (strain G9842) GN=rlmH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 45/156 (28.85%), Postives = 80/156 (51.28%), Query Frame = 1
Query:   16 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI--KDEDMAVMNIISSDD--------------------------WGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 393
            I +I++GK +   ++  + EY+ +L  Y KVE ++L     P+N  + +  I  + E + +++ IS D                           +G S+++F IGG  G   ++ +R+N S+  S M L HQ+  LVL+EQ+YR++ I +G+ YH
Sbjct:    3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIRILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSNESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158          
The following BLAST results are available for this feature:
BLAST of EH406526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
RLMH_GEOSM4.516e-1230.46Ribosomal RNA large subunit methyltransferase H OS... [more]
RLMH_BACHK4.516e-1229.49Ribosomal RNA large subunit methyltransferase H OS... [more]
RLMH_BACCN5.898e-1229.49Ribosomal RNA large subunit methyltransferase H OS... [more]
RLMH_BREBN7.703e-1227.85Ribosomal RNA large subunit methyltransferase H OS... [more]
RLMH_GEMAT1.006e-1127.15Ribosomal RNA large subunit methyltransferase H OS... [more]
RLMH_DESPS1.006e-1127.70Ribosomal RNA large subunit methyltransferase H OS... [more]
RLMH_BACCZ1.006e-1128.85Ribosomal RNA large subunit methyltransferase H OS... [more]
RLMH_BACCR1.006e-1128.85Ribosomal RNA large subunit methyltransferase H OS... [more]
RLMH_BACC41.006e-1128.85Ribosomal RNA large subunit methyltransferase H OS... [more]
RLMH_BACC21.006e-1128.85Ribosomal RNA large subunit methyltransferase H OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3BC01FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406526 ID=EH406526; Name=EH406526; organism=Citrus sinensis; type=EST; length=702bp
GTGAGAGCATTGCCCATTCGTGTCATAACAGTTGGCAAAAAGAGGTCTCT
GGGTGTACAATTAGTTGTGGATGAGTACATTGGAAAGCTTAAATATTACT
GCAAAGTTGAGGATCTTCAACTCCGATCCAATCCCAAAAATACTGGTGAT
GTGAAGGCTCAGATTAAGGATGAAGACATGGCGGTGATGAACATTATCAG
CTCTGATGATTGGGGAGCTTCAAGGATATCATTTTGCATCGGTGGACCTT
ATGGCCATGGACCAAAAATGAGAGAACGCGCTAACATATCAATCAAGCTG
TCTTCAATGGTCTTAAATCATCAAATTGCATTACTTGTACTTGTGGAACA
ACTTTATAGGTCGTGGACAATTCTGAAGGGTCAAAATTACCATCATTAGG
ATGCCAATTTGGCTGTCTGCTTGAATAGTCCAATGGATGAGCGTTTCTTG
TTCGTGATGGTTAGTTGAAGAAGCACTCTGAATTTTGATTTGATGAAGTA
AACTACCAAATGGACTTGCTCCCAAACAAGCATTTGTCAACAGACTCAAT
TTGTTTCAATGGAGAGATTGAAATGATACGGTATGTTCAGTGTCCAGTAA
TTATTGCTTGTTGCAGTACTGCTTCAGTGTACTGTATAATTCTTGATCCA
ATGTACTGAGAGTCAGAGACCATTTTGAACGAAATTTGAATAGTTTGTTT
TA
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