EH406526
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_GEOSM (Ribosomal RNA large subunit methyltransferase H OS=Geobacter sp. (strain M21) GN=rlmH PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12 Identity = 46/151 (30.46%), Postives = 71/151 (47.02%), Query Frame = 1 Query: 16 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--------------------PKNTGDVKAQIKDEDMAVMNIIS----SDDWGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 396 ++++ VGK + V+ ++EY G+++ Y +E L+ R PK V + E M + S + D G + F IGG YG R +A SI LS M L HQ+ + L+EQ+YR +TI+ G+ YHH Sbjct: 3 LKLLWVGKTQESWVRTGIEEYAGRIRRYAPLEILEAREEKGAQAAAMRERECERLAKLIPKGGRLVLLDERGEAMTSPELASFLSKNRDQGTQDLVFAIGGAYGFTDAFRSQAFKSISLSRMTLTHQMVRVFLLEQIYRGFTIINGEPYHH 153
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_BACHK (Ribosomal RNA large subunit methyltransferase H OS=Bacillus thuringiensis subsp. konkukian GN=rlmH PE=3 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12 Identity = 46/156 (29.49%), Postives = 80/156 (51.28%), Query Frame = 1 Query: 16 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI--KDEDMAVMNIISSDD--------------------------WGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 393 I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E + +++ IS D +G S+++F IGG G ++ +R+N S+ S M L HQ+ LVL+EQ+YRS+ I +G+ YH Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIRILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSNESLSFSKMTLPHQLMRLVLLEQVYRSFRINRGEPYH 158
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_BACCN (Ribosomal RNA large subunit methyltransferase H OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=rlmH PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12 Identity = 46/156 (29.49%), Postives = 80/156 (51.28%), Query Frame = 1 Query: 16 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI--KDEDMAVMNIISSDD--------------------------WGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 393 I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E + +++ IS D +G S+I+F IGG G ++ +R+N S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSSYAKVEVIELPDEKAPENLSEAEMLIVKEKEGVRILDKISDDTHVIALAIEGKQKSSEQFAESLDCLATYGKSKIAFVIGGSLGLSTEVMKRSNESLSFSKMTLPHQLMRLVLLEQIYRAFRINRGEPYH 158
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_BREBN (Ribosomal RNA large subunit methyltransferase H OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rlmH PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12 Identity = 44/158 (27.85%), Postives = 74/158 (46.84%), Query Frame = 1 Query: 10 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNP---------------KNTGDVKAQIKDEDMAVMNIISSDDW---------------GASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 393 + I +ITVGK + ++ +DEY +L YCK++ +++ K + AQIK + + I W G S+++F IGG G ++ +RA+ + S M HQ+ LVL+EQ+YR++ I +G+ YH Sbjct: 1 MQISIITVGKLKEKYLREGIDEYSKRLSAYCKLQVIEVNDEKAPEEMSAAEMEQVKRKEGERILAQIKQDQYVIALAIDGQMWSSEKLSAEMDKLALHGRSQVAFVIGGSLGLADQVLKRADALLSFSKMTFPHQLVRLVLLEQVYRAFRISRGEPYH 158
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_GEMAT (Ribosomal RNA large subunit methyltransferase H OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=rlmH PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11 Identity = 41/151 (27.15%), Postives = 78/151 (51.66%), Query Frame = 1 Query: 16 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKN--TGDVKAQIKDEDM-----AVMNIISSDDWG------------------ASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 393 + ++ +G+ R G+ + +Y G+ +Y ++ ++++ P + DV + + E + A +++ D G A ++F IGG +G GP +RERAN + L+ L H++A +V+ EQLYR+ TI++G+ YH Sbjct: 3 VALLVIGRPRHAGLADAIRDYEGRAAHYWPLDVIEVKEEPGRNLSADVVREREAERLVARLPADAVVVACDPGGVTMDSAQFARWLQEQRESARNVAFVIGGAHGLGPAVRERANRRLSLAPWTLPHEVARMVMAEQLYRAGTIIRGEPYH 153
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_DESPS (Ribosomal RNA large subunit methyltransferase H OS=Desulfotalea psychrophila GN=rlmH PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11 Identity = 41/148 (27.70%), Postives = 74/148 (50.00%), Query Frame = 1 Query: 22 VITVGKKRSLGVQLVVDEYIGKLKYYCKVE--------------------DLQLRSNPKNTGDVKAQIKDEDMA----VMNIISSDDWGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 393 ++ +GK + + V+EY+ +L++Y KVE +L L + P N V ++ ++++ +I+ ++ G + + IGGP G P + RA++ + S M H + L+LVEQLYR++TI G+ YH Sbjct: 5 ILLLGKIKDSFIAEGVEEYLKRLQHYTKVELRYLKGKGKKGALLSTEQEGELLLANVPANAFVVALDVQGKNLSSEGLAEQVINWENTGTRSVCYLIGGPLGLSPSLLARADLRLSFSKMTFTHDMVRLLLVEQLYRAYTIKAGEKYH 152
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_BACCZ (Ribosomal RNA large subunit methyltransferase H OS=Bacillus cereus (strain ZK / E33L) GN=rlmH PE=3 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11 Identity = 45/156 (28.85%), Postives = 80/156 (51.28%), Query Frame = 1 Query: 16 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI--KDEDMAVMNIISSDD--------------------------WGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 393 I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E + +++ IS D +G S+++F IGG G ++ +R+N S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIRILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSNESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_BACCR (Ribosomal RNA large subunit methyltransferase H OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rlmH PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11 Identity = 45/156 (28.85%), Postives = 80/156 (51.28%), Query Frame = 1 Query: 16 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI--KDEDMAVMNIISSDD--------------------------WGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 393 I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E + +++ IS D +G S+++F IGG G ++ +R+N S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIRILDKISDDTHVIALAIEGKQKSSEEFAISLDRLATYGKSKVAFVIGGSLGLSSEVMKRSNESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_BACC4 (Ribosomal RNA large subunit methyltransferase H OS=Bacillus cereus (strain B4264) GN=rlmH PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11 Identity = 45/156 (28.85%), Postives = 80/156 (51.28%), Query Frame = 1 Query: 16 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI--KDEDMAVMNIISSDD--------------------------WGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 393 I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E + +++ IS D +G S+++F IGG G ++ +R+N S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIRILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSNESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158
BLAST of EH406526 vs. ExPASy Swiss-Prot
Match: RLMH_BACC2 (Ribosomal RNA large subunit methyltransferase H OS=Bacillus cereus (strain G9842) GN=rlmH PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11 Identity = 45/156 (28.85%), Postives = 80/156 (51.28%), Query Frame = 1 Query: 16 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--PKNTGDVKAQI--KDEDMAVMNIISSDD--------------------------WGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 393 I +I++GK + ++ + EY+ +L Y KVE ++L P+N + + I + E + +++ IS D +G S+++F IGG G ++ +R+N S+ S M L HQ+ LVL+EQ+YR++ I +G+ YH Sbjct: 3 ISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIRILDKISDDTHVIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSNESLSFSKMTLPHQLMRLVLLEQVYRAFRINRGEPYH 158 The following BLAST results are available for this feature:
BLAST of EH406526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
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Sequences
The
following sequences are available for this feature:
EST sequence >EH406526 ID=EH406526; Name=EH406526; organism=Citrus sinensis; type=EST; length=702bpback to top |