CV885160

Overview
NameCV885160
Unique NameCV885160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9646 contig Csv1_Contig9646:397..1198. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_DROME (60S ribosomal protein L5 OS=Drosophila melanogaster GN=RpL5 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.054e-34
Identity = 79/173 (45.66%), Postives = 109/173 (63.01%), Query Frame = -2
Query:  289 LKMLEMDAEYEGHVEATGEDYSVEPTENRR-PFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADP-NQXXXXXXXXXXXKRYNLKKLTYEERKARL 801
            L  L +D+ Y G  E TGE+++VEP ++    FR  LDVGL +TTTG RVF           +IPHS KRF G+S ++K  +A+VHR +I+  HVA YMR+L E++ E ++  F  YIK GI AD+LE++YKK H AIR DP ++           KR+N KKLT E+RK ++
Sbjct:  110 LNKLGLDSLYAGCTEVTGEEFNVEPVDDGPGAFRCFLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAETKSFNADVHRAHIFGQHVADYMRSLEEEDEESFKRQFSRYIKLGIRADDLEDIYKKAHQAIRNDPTHKVTAKKSSAVTKKRWNAKKLTNEQRKTKI 282          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_TOXCI (60S ribosomal protein L5 OS=Toxoptera citricida GN=RpL5 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.797e-34
Identity = 84/175 (48.00%), Postives = 105/175 (60.00%), Query Frame = -2
Query:  283 LKMLEMDAEYEGHVEATGEDYSVEPT-ENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQ-XXXXXXXXXXXKRYNLKKLTYEERKARLVE 801
            LK L +D  YEG  EA GE+Y VEP  E    FR  LDVGL+KT+TG RVF           +IPHS KRF G+  ++K+  AE HRK+I   HVA YMR L E++ + +   F +YIK GI AD+LE +YKK H  IR+DP +            KR+N KKLT  ERK R+VE
Sbjct:  110 LKKLGLDRLYEGLKEANGEEYYVEPADEGPNAFRCNLDVGLMKTSTGARVFGAMKGAVDGGFNIPHSVKRFPGYDAEAKEYSAETHRKHILGLHVAEYMRKLEEEDEDAFNRQFSQYIKLGIVADDLENMYKKAHENIRSDPKRDRKPKKDVSKEPKRWNAKKLTNAERKQRVVE 284          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_BOMMO (60S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.347e-34
Identity = 77/176 (43.75%), Postives = 110/176 (62.50%), Query Frame = -2
Query:  280 LKMLEMDAEYEGHVEATGEDYSVEPTENRR-PFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADP-NQXXXXXXXXXXXKRYNLKKLTYEERKARLVER 801
            L+ L +D  Y G  + TG++Y+VEP +N    FR  LDVGL +TTTG RVF           ++PHS KRF G+  +SK+ +AEVHR +I+  HVA YMR+L +D+ + ++  F +YIK G+ AD +E +YKK H AIRADP ++           KR+N +KLT  ERK R+ ++
Sbjct:  110 LQRLGLDTLYTGTTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGRRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 285          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_NEUCR (60S ribosomal protein L5 OS=Neurospora crassa GN=rpl-5 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.229e-34
Identity = 83/189 (43.92%), Postives = 108/189 (57.14%), Query Frame = -2
Query:  268 LKMLEMDAEYEGHVEATGEDYSVEPTEN----RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQ-------XXXXXXXXXXXKRYNLKKLTYEERKARLVERLKAL 801
            LK L +D  ++G  EA GE    E  E     RRPF+A LDVGL +T+TG RVF            IPHSE RF G+  +S++LDAE  +KYI+ GHVA YM TL +D+ E+Y+S F  YI+  +EAD LE+LY + HAAIR DP +                   +Y   KLT E+R A + ER+ AL
Sbjct:  110 LKKLGLDETFKGVEEADGEYKLTEAAETDDGERRPFKAFLDVGLARTSTGARVFGAMKGASDGGIFIPHSENRFPGYDMESEELDAETLKKYIFGGHVAEYMETLADDDEERYKSQFNRYIEDDLEADGLEDLYAEAHAAIREDPFKKAESEAPKKTKEEWKAESLKYKKSKLTREQRAAGVQERIAAL 298          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_SUBDO (60S ribosomal protein L5 OS=Suberites domuncula GN=RPL5 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.829e-34
Identity = 74/178 (41.57%), Postives = 111/178 (62.36%), Query Frame = -2
Query:  271 LKMLEMDAEYEGHVEATGEDYSVEPT-ENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVERLKA 801
            L  L +  +Y G  +  GED++VE   +  RPFRA LDVGL +TTTGNRVF           DIPHS  RF G+ ++S QL+A+  R+YI+ GHV+ YM+ L E++ EKY++HF  +IK GI AD++E++Y+  HA IRA+P             KR+N  K++ ++++ R+ ++  A
Sbjct:  110 LTNLGLADKYAGQTDIDGEDFNVEHMGDGPRPFRAFLDVGLTRTTTGNRVFAAMKGAVDGGIDIPHSPSRFVGYDEESSQLEADKLRQYIFGGHVSDYMKYLQEEDEEKYKAHFSRFIKEGITADSMEQMYRDAHAKIRANPAHEKKQPRDGLVKKRWNRAKMSLKQKRDRVKQKKAA 287          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_AEDAE (60S ribosomal protein L5 OS=Aedes aegypti GN=RpL5 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.829e-34
Identity = 78/174 (44.83%), Postives = 106/174 (60.92%), Query Frame = -2
Query:  283 LKMLEMDAEYEGHVEATGEDYSVEPTENRR-PFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVE 801
            L+ L +D  Y G  + TGE+Y VEP ++    FR  LDVGL +TTTG R+F           +IPHS KRF G+S ++K  +AEVHR +I+  HVA YMRTL E++ + Y+  F +YI  GI+AD++E +YK  HA IR DP             KR+NL KLT E RKA++ +
Sbjct:  110 LQKLRLDTLYTGCTDVTGEEYLVEPVDDGPGAFRCYLDVGLARTTTGARIFGAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAEVHRAHIFGQHVADYMRTLEEEDEDAYKRQFSKYIALGIKADDIETIYKNAHAGIRKDP-AFHKKPEKKVTKKRFNLAKLTLEARKAKIAK 282          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5B_XENLA (60S ribosomal protein L5-B OS=Xenopus laevis GN=rpl5-B PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.521e-33
Identity = 73/175 (41.71%), Postives = 104/175 (59.43%), Query Frame = -2
Query:  280 LKMLEMDAEYEGHVEATGEDYSVEPTENRR-PFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVER 801
            L    +D  YEG VE TG++Y+VE  +     F   LD GL +TTTGN+VF            IPHS KRF G+  +SK+ + EVHRK+I+  ++A YMR LME++ + Y+  F +YIK G+ AD LE++YKK HA IR +P             KR+N  KL+ E++K R+ ++
Sbjct:  110 LNKFGLDKVYEGQVEVTGDEYNVESVDGEPGAFTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEVHRKHIFAQNIAEYMRLLMEEDEDAYKKQFSQYIKNGVAADQLEDIYKKAHAGIRENP-VHEKKPKKEVKKKRWNRAKLSLEQKKDRVAQK 283          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5A_XENLA (60S ribosomal protein L5-A OS=Xenopus laevis GN=rpl5-A PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.987e-33
Identity = 74/175 (42.29%), Postives = 104/175 (59.43%), Query Frame = -2
Query:  280 LKMLEMDAEYEGHVEATGEDYSVEPTENRR-PFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVER 801
            L    +D  YEG VE TG++Y+VE  +     F   LD GL +TTTGN+VF            IPHS KRF G+  +SK+ + EVHRK+I+  +VA YMR LME++ + Y+  F +YIK G+ AD +E+LYKK HA IR +P             KR+N  KL+ E++K R+ ++
Sbjct:  110 LNKFGLDKVYEGQVEVTGDEYNVESIDGEPGAFTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEVHRKHIFAQNVAEYMRLLMEEDEDAYKKQFSQYIKNGVTADQVEDLYKKAHAGIRENP-VHEKKPKKEVKKKRWNRAKLSLEQKKDRVAQK 283          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_DUNSA (60S ribosomal protein L5 OS=Dunaliella salina GN=RPL5 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.781e-33
Identity = 71/142 (50.00%), Postives = 95/142 (66.90%), Query Frame = -2
Query:  379 LKMLEMDAEYEGHVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADP 801
            L  L +   Y+G  E  GEDY+VEP E+  +PF  LLD GL +T+TG++VF           DIPH+EKRF G++   K+LD EV +KYIY GHVA Y  T+ E+EPEKYQ+HF  Y++  IE D +E++YK+VHA IR +P
Sbjct:  110 LTKLNLADTYKGQEEPDGEDYNVEPVEDGPKPFYCLLDTGLKRTSTGSKVFAAMKGALDGGLDIPHNEKRFVGYA--DKKLDTEVLQKYIYGGHVAEYQETMQEEEPEKYQAHFSSYVENEIEPDGIEDMYKEVHAKIRENP 249          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_HELAN (60S ribosomal protein L5 OS=Helianthus annuus GN=RPL5A PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.747e-32
Identity = 77/172 (44.77%), Postives = 106/172 (61.63%), Query Frame = -2
Query:  289 LKMLEMDAEYEGHVEATGEDYSVEPTENRR-PFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARL 801
            L  L +D  Y G  E TGE+++V+P E+    FR  LDVGL++TTTG RVF           +I HS KRF GF  +SK+ +A+VHR++I+  HVA YMR L E++ E Y+  F +YIK G+ AD +E LYKK H AIRA+P +           KR+  KKLT E+R+ ++
Sbjct:  110 LSQLGLDKLYIGSTEVTGEEFNVKPVEDGPGAFRCYLDVGLMRTTTGARVFGAMKGAVDGGLNILHSTKRFPGFDSESKEFNADVHRQHIFGQHVAEYMRQLAEEDDEAYKRQFSQYIKLGLNADAIEGLYKKAHEAIRANPAR-KTVAKKAHPKKRWTEKKLTREQRQGKV 280          
The following BLAST results are available for this feature:
BLAST of CV885160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL5_DROME1.054e-3445.6660S ribosomal protein L5 OS=Drosophila melanogaste... [more]
RL5_TOXCI1.797e-3448.0060S ribosomal protein L5 OS=Toxoptera citricida GN... [more]
RL5_BOMMO2.347e-3443.7560S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE... [more]
RL5_NEUCR5.229e-3443.9260S ribosomal protein L5 OS=Neurospora crassa GN=r... [more]
RL5_SUBDO6.829e-3441.5760S ribosomal protein L5 OS=Suberites domuncula GN... [more]
RL5_AEDAE6.829e-3444.8360S ribosomal protein L5 OS=Aedes aegypti GN=RpL5 ... [more]
RL5B_XENLA1.521e-3341.7160S ribosomal protein L5-B OS=Xenopus laevis GN=rp... [more]
RL5A_XENLA1.987e-3342.2960S ribosomal protein L5-A OS=Xenopus laevis GN=rp... [more]
RL5_DUNSA5.781e-3350.0060S ribosomal protein L5 OS=Dunaliella salina GN=R... [more]
RL5_HELAN3.747e-3244.7760S ribosomal protein L5 OS=Helianthus annuus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885160 ID=CV885160; Name=CV885160; organism=Citrus sinensis; type=EST; length=802bp
TTTTTTTTTTTTTTTTTCCAAGTAAAAATATTTGTTGCATTGTCTAATTT
CAGCACATTGACTACAAAAGATTGAAATACTGGAATTTCAGCAAACAACC
AGGTCTCATCAGCATTTGAAAGCTCATAGAAACAACACTGTTCTCAACCT
ATCAAACAAGCCAGGTTCTTTAATTTTAGTAATCTCTGAAAATAACCTAT
TGAACTAAGAAACAAAAACTTCCTAGTATCGCATTCACTCATCGGCTTCA
TCGTCTTCAGCAGCATTGAGTGCTTTCAACCTTTCAACTAACCTGGCTTT
CCTTTCCTCGTACGTCAGTTTCTTCAGGTTGTACCTCTTGGGCTCTGCTG
GAGGCTTCTTCTCAAATTTCTTCTGGTTAGGGTCTGCACGGATGGCAGCA
TGTACCTTCTTGTACAACTCTTCAAGGTTATCAGCCTCAATACCTCTCTT
GATGTATTCACAAAAGTGAGACTGGTACTTCTCTGGCTCATCTTCCATCA
AAGTCCTCATGTAGGCAGCGACATGACCACAATAGATGTATTTACGGTGA
ACTTCAGCGTCAAGTTGCTTACTATCCTTACTGAATCCAGCAAATCTCTT
CTCACTGTGAGGGATATCAAGTCCACCATCCAATGCACCCTTAAGAGCGC
CAAAGACACGGTTACCAGTAGTTGTTTTCACAAGACCAACATCAAGCAGG
GCACGGAAAGGCCTCCTGTTCTCAGTTGGCTCAACTGAATAGTCCTCTCC
TGTTGCCTCAACGTGCCCCTCATACTCAGCATCCATCTCAAGCATTTTCA
GG
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