CV885160

Overview
NameCV885160
Unique NameCV885160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9646 contig Csv1_Contig9646:397..1198. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_STYCL (60S ribosomal protein L5 OS=Styela clava GN=RPL5 PE=3 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 6.392e-32
Identity = 73/175 (41.71%), Postives = 103/175 (58.86%), Query Frame = -2
Query:  280 LKMLEMDAEYEGHVEATGEDYSVEPTENRR-PFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVER 801
            L    +D  YEG  E  G+++ VE  + +   FRA LDVGL +TTTG +VF           DIPHS KRF G+  +S    AEVHR +I+ GHV+ YM+ L E++ E ++  F +YIK G+ AD +EE+Y K HAAIR DP             KR+N KK+T+ +R+ R+ ++
Sbjct:  110 LNKFGLDEIYEGQTEIDGDEFYVEDVDGKPGAFRAFLDVGLARTTTGAKVFGAMKGAADGGLDIPHSTKRFPGYDDESGDFSAEVHRSHIFGGHVSNYMKELEEEDEEAFKRQFSQYIKHGVTADTVEEMYTKAHAAIREDPT-PKKKTDFAGKTKRWNRKKMTFSQRRDRVKQK 283          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_MACFA (60S ribosomal protein L5 OS=Macaca fascicularis GN=RPL5 PE=2 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.424e-31
Identity = 73/175 (41.71%), Postives = 103/175 (58.86%), Query Frame = -2
Query:  280 LKMLEMDAEYEGHVEATGEDYSVEPTENRR-PFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVER 801
            L    MD  YEG VE TG++Y+VE  + +   F   LD GL +TTTGN+VF            IPHS KRF G+  +SK+ +AEVHRK+I   +VA YMR LME++ + Y+  F +YIK  +  D +EE+YKK HAAIR +P             KR+N  K++  ++K R+ ++
Sbjct:  110 LNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENP-VYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQK 283          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_HUMAN (60S ribosomal protein L5 OS=Homo sapiens GN=RPL5 PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.424e-31
Identity = 73/175 (41.71%), Postives = 103/175 (58.86%), Query Frame = -2
Query:  280 LKMLEMDAEYEGHVEATGEDYSVEPTENRR-PFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVER 801
            L    MD  YEG VE TG++Y+VE  + +   F   LD GL +TTTGN+VF            IPHS KRF G+  +SK+ +AEVHRK+I   +VA YMR LME++ + Y+  F +YIK  +  D +EE+YKK HAAIR +P             KR+N  K++  ++K R+ ++
Sbjct:  110 LNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENP-VYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQK 283          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_CHICK (60S ribosomal protein L5 OS=Gallus gallus GN=RPL5 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.429e-31
Identity = 73/175 (41.71%), Postives = 102/175 (58.29%), Query Frame = -2
Query:  280 LKMLEMDAEYEGHVEATGEDYSVEPTENRR-PFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVER 801
            L    +D  YEG VE TG++Y+VE  + +   F   LD GL +TTTGN+VF            IPHS KRF G+  +SK+ +AEVHRK+I   +VA YMR LME++ + Y+  F +YIK  I  D +EE+YKK HAAIR +P             KR N  K++  ++K R+ ++
Sbjct:  110 LNKFGLDKIYEGQVEVTGDEYNVESVDGKPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNITPDGMEEMYKKAHAAIRDNP-VHEKKPKREVKKKRVNSTKMSLAQKKDRVAQK 283          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_RAT (60S ribosomal protein L5 OS=Rattus norvegicus GN=Rpl5 PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 5.411e-31
Identity = 72/175 (41.14%), Postives = 102/175 (58.29%), Query Frame = -2
Query:  280 LKMLEMDAEYEGHVEATGEDYSVEPTENRR-PFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVER 801
            L    MD  YEG VE  G++Y+VE  + +   F   LD GL +TTTGN+VF            IPHS KRF G+  +SK+ +AEVHRK+I   +VA YMR LME++ + Y+  F +YIK  +  D +EE+YKK HAAIR +P             KR+N  K++  ++K R+ ++
Sbjct:  110 LNRFGMDKIYEGQVEVNGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENP-VYEKKPKREVKKKRWNRPKMSLAQKKDRVAQK 283          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_BOVIN (60S ribosomal protein L5 OS=Bos taurus GN=RPL5 PE=2 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 5.411e-31
Identity = 72/175 (41.14%), Postives = 102/175 (58.29%), Query Frame = -2
Query:  280 LKMLEMDAEYEGHVEATGEDYSVEPTENRR-PFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVER 801
            L    MD  YEG VE TG++Y+VE  + +   F   LD GL +TTTGN+VF            IPHS KRF G+  +SK+  AEVHRK+I   +VA YMR L+E++ + Y+  F +YIK  +  D +EE+YKK HAAIR +P             KR+N  K++  ++K R+ ++
Sbjct:  110 LNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFSAEVHRKHIMGQNVADYMRYLIEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENP-VYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQK 283          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_THEPA (60S ribosomal protein L5 OS=Theileria parva GN=RPL5 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.574e-30
Identity = 68/145 (46.90%), Postives = 93/145 (64.14%), Query Frame = -2
Query:  379 LKMLEMDAEYEGHVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQ---LDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADP 801
            L  L++D+++ G VEA GE Y VE  +N RRPF+ALLDVG+   TTGNRVF            +PHSEKRF G+S D +     DA+ HR  I+  HVA YM  L E++PEKY+  F  Y+K G+++++LE++Y K H  IR +P
Sbjct:  110 LTKLKLDSQFVGKVEADGELYHVEEEDNERRPFKALLDVGIKNVTTGNRVFGALKGACDGGLHVPHSEKRFPGYSVDDENNGSYDAQAHRDRIFGTHVANYMEYLKEEDPEKYKRQFSAYLKLGLDSESLEDMYAKAHENIRKNP 254          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_MOUSE (60S ribosomal protein L5 OS=Mus musculus GN=Rpl5 PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 1.574e-30
Identity = 72/175 (41.14%), Postives = 101/175 (57.71%), Query Frame = -2
Query:  280 LKMLEMDAEYEGHVEATGEDYSVEPTENRR-PFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVER 801
            L    MD  YEG VE  G +Y+VE  + +   F   LD GL +TTTGN+VF            IPHS KRF G+  +SK+ +AEVHRK+I   +VA YMR LME++ + Y+  F +YIK  +  D +EE+YKK HAAIR +P             KR+N  K++  ++K R+ ++
Sbjct:  110 LNRFGMDKIYEGQVEVNGGEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENP-VYEKKPKREVKKKRWNRPKMSLAQKKDRVAQK 283          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_ANOGA (60S ribosomal protein L5 OS=Anopheles gambiae GN=RpL5 PE=2 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 3.507e-30
Identity = 67/144 (46.53%), Postives = 92/144 (63.89%), Query Frame = -2
Query:  373 LKMLEMDAEYEGHVEATGEDYSVEPT-ENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQ 801
            L+ L +D  Y G  + TGE+Y VEP  E    FR  LDVGL +TTTG RVF           +IPHS KRF G+S ++K  +AE+HR +I+  HVA YMRTL E++ E ++  F +YI  GI+AD++E +YK  HA+IR  P++
Sbjct:  110 LQKLRLDTLYAGCTDVTGEEYLVEPVDEGPAAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAEMHRDHIFGLHVANYMRTLEEEDEEAFKRQFSKYISLGIKADDIENIYKNAHASIRIPPSR 253          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_THEAN (60S ribosomal protein L5 OS=Theileria annulata GN=RPL5 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.581e-30
Identity = 67/145 (46.21%), Postives = 92/145 (63.45%), Query Frame = -2
Query:  379 LKMLEMDAEYEGHVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQ---LDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADP 801
            L  L++D+++ G VEA GE Y VE  +N RRPF+ALLDVG+   TTGNRVF            +PHSEKRF G+S D +     DA+ HR  I+  HVA YM  L E++PEKY+  F  Y+K G+++++LE++Y   H  IR +P
Sbjct:  110 LTKLKLDSQFVGKVEADGELYHVEEDDNERRPFKALLDVGIKNVTTGNRVFGALKGACDGGLHVPHSEKRFPGYSVDDENNGTYDAQAHRDRIFGTHVANYMEYLKEEDPEKYKKQFSAYLKLGLDSESLEDMYASAHENIRKNP 254          
The following BLAST results are available for this feature:
BLAST of CV885160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL5_STYCL6.392e-3241.7160S ribosomal protein L5 OS=Styela clava GN=RPL5 P... [more]
RL5_MACFA1.424e-3141.7160S ribosomal protein L5 OS=Macaca fascicularis GN... [more]
RL5_HUMAN1.424e-3141.7160S ribosomal protein L5 OS=Homo sapiens GN=RPL5 P... [more]
RL5_CHICK2.429e-3141.7160S ribosomal protein L5 OS=Gallus gallus GN=RPL5 ... [more]
RL5_RAT5.411e-3141.1460S ribosomal protein L5 OS=Rattus norvegicus GN=R... [more]
RL5_BOVIN5.411e-3141.1460S ribosomal protein L5 OS=Bos taurus GN=RPL5 PE=... [more]
RL5_THEPA1.574e-3046.9060S ribosomal protein L5 OS=Theileria parva GN=RPL... [more]
RL5_MOUSE1.574e-3041.1460S ribosomal protein L5 OS=Mus musculus GN=Rpl5 P... [more]
RL5_ANOGA3.507e-3046.5360S ribosomal protein L5 OS=Anopheles gambiae GN=R... [more]
RL5_THEAN4.581e-3046.2160S ribosomal protein L5 OS=Theileria annulata GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885160 ID=CV885160; Name=CV885160; organism=Citrus sinensis; type=EST; length=802bp
TTTTTTTTTTTTTTTTTCCAAGTAAAAATATTTGTTGCATTGTCTAATTT
CAGCACATTGACTACAAAAGATTGAAATACTGGAATTTCAGCAAACAACC
AGGTCTCATCAGCATTTGAAAGCTCATAGAAACAACACTGTTCTCAACCT
ATCAAACAAGCCAGGTTCTTTAATTTTAGTAATCTCTGAAAATAACCTAT
TGAACTAAGAAACAAAAACTTCCTAGTATCGCATTCACTCATCGGCTTCA
TCGTCTTCAGCAGCATTGAGTGCTTTCAACCTTTCAACTAACCTGGCTTT
CCTTTCCTCGTACGTCAGTTTCTTCAGGTTGTACCTCTTGGGCTCTGCTG
GAGGCTTCTTCTCAAATTTCTTCTGGTTAGGGTCTGCACGGATGGCAGCA
TGTACCTTCTTGTACAACTCTTCAAGGTTATCAGCCTCAATACCTCTCTT
GATGTATTCACAAAAGTGAGACTGGTACTTCTCTGGCTCATCTTCCATCA
AAGTCCTCATGTAGGCAGCGACATGACCACAATAGATGTATTTACGGTGA
ACTTCAGCGTCAAGTTGCTTACTATCCTTACTGAATCCAGCAAATCTCTT
CTCACTGTGAGGGATATCAAGTCCACCATCCAATGCACCCTTAAGAGCGC
CAAAGACACGGTTACCAGTAGTTGTTTTCACAAGACCAACATCAAGCAGG
GCACGGAAAGGCCTCCTGTTCTCAGTTGGCTCAACTGAATAGTCCTCTCC
TGTTGCCTCAACGTGCCCCTCATACTCAGCATCCATCTCAAGCATTTTCA
GG
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