CV885160

Overview
NameCV885160
Unique NameCV885160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9646 contig Csv1_Contig9646:397..1198. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_OIKDI (60S ribosomal protein L5 OS=Oikopleura dioica GN=RPL5 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.333e-29
Identity = 72/174 (41.38%), Postives = 103/174 (59.20%), Query Frame = -2
Query:  283 LKMLEMDAEYEGHVEATGEDYSVEP-TENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVE 801
            L+   +D+ YEG +E  G+++  E     +  FR  LD GL +T+TG R+F           DIPHS KRF GF+ D K L+AE H+ +I+ GHV  YM  L E+  E Y+  F  +IK GI ++N+EE+YKK HAAIRADP+            KR+N  K++Y +R+AR+ +
Sbjct:  120 LQKFGLDSMYEGQIEVDGDEFYEEADAAEKASFRCYLDTGLARTSTGARIFGVLKGCADAGIDIPHSPKRFPGFA-DGK-LNAEAHKDHIFGGHVGDYMEKLEEENEEAYKRQFSRFIKNGINSENIEEMYKKAHAAIRADPS-PKAKVEKTVDKKRWNRAKISYAQRRARVAQ 290          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5B_SCHPO (60S ribosomal protein L5-B OS=Schizosaccharomyces pombe GN=rpl5b PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.064e-29
Identity = 72/166 (43.37%), Postives = 94/166 (56.63%), Query Frame = -2
Query:  292 EYEGHVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPN---QXXXXXXXXXXXKRYNLKKLTYEERKAR 777
            +YEG  E  GE    E  E+  RPF+  LDVGL +T+TG+RVF            IPHS  RF GF  ++++LD E  RKYIY GHVA YM  L++D+ E+YQ  F   I  GIE+D LE++Y + +A IR DP+                +Y  +KLT EERK R
Sbjct:  118 KYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLTAEERKER 283          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5A_SCHPO (60S ribosomal protein L5-A OS=Schizosaccharomyces pombe GN=rpl5a PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.925e-28
Identity = 71/166 (42.77%), Postives = 94/166 (56.63%), Query Frame = -2
Query:  292 EYEGHVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPN---QXXXXXXXXXXXKRYNLKKLTYEERKAR 777
            +YEG  E  GE    E  E+  RPF+  LDVGL +T+TG+RVF            IPHS  RF GF  ++++LD E  RKYIY GHVA YM  L++D+ E+YQ  F   I  GIE+D LE++Y + +A IR DP+                ++  +KLT EERK R
Sbjct:  118 KYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKHTQRKLTAEERKER 283          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_EIMTE (60S ribosomal protein L5 OS=Eimeria tenella GN=RPL5 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.513e-28
Identity = 66/147 (44.90%), Postives = 92/147 (62.59%), Query Frame = -2
Query:  376 LKMLEMDAEYEGHVEATGEDYSVEP-TENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLD----AEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPN 801
            LK   +  E++G  + +GE+Y +E  +E RRPF+ +LDVG+V TT GNRVF            IPHS KRF GF+K     D     EVHR  IY  HVA YMRTL E++PE+YQ+ F  YI+  I+ D++E++Y++    IRA+P+
Sbjct:  110 LKQKGLADEFKGLEKPSGEEYHIEEVSEERRPFKCVLDVGIVATTVGNRVFGAMKGACDGGLHIPHSNKRFPGFTKGEDGADDSYNPEVHRARIYGLHVAEYMRTLKEEDPERYQAQFSAYIRNKIDPDSIEKMYEEAFQKIRANPD 256          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_YEAST (60S ribosomal protein L5 OS=Saccharomyces cerevisiae GN=RPL5 PE=1 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 7.313e-28
Identity = 70/184 (38.04%), Postives = 102/184 (55.43%), Query Frame = -2
Query:  268 LKMLEMDAEYEGHVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADP-----NQXXXXXXXXXXXKRYNLKKLTYEERKARLVERLKAL 801
            L+ L +D  Y+G  E  GE    E  E+  RPF+  LD+GL +TTTG RVF            +PHSE RF G+  +++++D E+ R YI+ GHV+ YM  L +D+ E++   F  Y+   I+AD+LE++Y   H AIRADP      +           K+Y   KL+ EER AR+  ++ AL
Sbjct:  110 LQRLGLDETYKGVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPHSENRFPGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEERFSELFKGYLADDIDADSLEDIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAAL 293          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_DICDI (60S ribosomal protein L5 OS=Dictyostelium discoideum GN=rpl5 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.801e-26
Identity = 64/172 (37.21%), Postives = 100/172 (58.14%), Query Frame = -2
Query:  289 LKMLEMDAEYEGHVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARL 801
            L  L++   Y+G  +  G+ + V+P +++ RPF+A LDVGL +T+TG +VF            +PH E RFAG++ +SK+L+AE  R YI+  HVA+YM  L  ++ + Y+  F +YIK G+   ++E +Y   H AIRA+P             K  NL K T +++KAR+
Sbjct:  110 LAKLKLADLYKGAEKVDGKVFLVKPVDDKPRPFKANLDVGLARTSTGAKVFAVLKGAVDGGIYVPHGETRFAGYNAESKKLNAETLRGYIFGKHVASYMTLLQTEDEDAYKKIFSQYIKNGVAPKDIETIYANAHKAIRANPAPAAKSTKSYKDIKSKNLSKRTLKQKKARV 281          
The following BLAST results are available for this feature:
BLAST of CV885160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL5_OIKDI1.333e-2941.3860S ribosomal protein L5 OS=Oikopleura dioica GN=R... [more]
RL5B_SCHPO5.064e-2943.3760S ribosomal protein L5-B OS=Schizosaccharomyces ... [more]
RL5A_SCHPO1.925e-2842.7760S ribosomal protein L5-A OS=Schizosaccharomyces ... [more]
RL5_EIMTE2.513e-2844.9060S ribosomal protein L5 OS=Eimeria tenella GN=RPL... [more]
RL5_YEAST7.313e-2838.0460S ribosomal protein L5 OS=Saccharomyces cerevisi... [more]
RL5_DICDI1.801e-2637.2160S ribosomal protein L5 OS=Dictyostelium discoide... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885160 ID=CV885160; Name=CV885160; organism=Citrus sinensis; type=EST; length=802bp
TTTTTTTTTTTTTTTTTCCAAGTAAAAATATTTGTTGCATTGTCTAATTT
CAGCACATTGACTACAAAAGATTGAAATACTGGAATTTCAGCAAACAACC
AGGTCTCATCAGCATTTGAAAGCTCATAGAAACAACACTGTTCTCAACCT
ATCAAACAAGCCAGGTTCTTTAATTTTAGTAATCTCTGAAAATAACCTAT
TGAACTAAGAAACAAAAACTTCCTAGTATCGCATTCACTCATCGGCTTCA
TCGTCTTCAGCAGCATTGAGTGCTTTCAACCTTTCAACTAACCTGGCTTT
CCTTTCCTCGTACGTCAGTTTCTTCAGGTTGTACCTCTTGGGCTCTGCTG
GAGGCTTCTTCTCAAATTTCTTCTGGTTAGGGTCTGCACGGATGGCAGCA
TGTACCTTCTTGTACAACTCTTCAAGGTTATCAGCCTCAATACCTCTCTT
GATGTATTCACAAAAGTGAGACTGGTACTTCTCTGGCTCATCTTCCATCA
AAGTCCTCATGTAGGCAGCGACATGACCACAATAGATGTATTTACGGTGA
ACTTCAGCGTCAAGTTGCTTACTATCCTTACTGAATCCAGCAAATCTCTT
CTCACTGTGAGGGATATCAAGTCCACCATCCAATGCACCCTTAAGAGCGC
CAAAGACACGGTTACCAGTAGTTGTTTTCACAAGACCAACATCAAGCAGG
GCACGGAAAGGCCTCCTGTTCTCAGTTGGCTCAACTGAATAGTCCTCTCC
TGTTGCCTCAACGTGCCCCTCATACTCAGCATCCATCTCAAGCATTTTCA
GG
back to top