CV885159

Overview
NameCV885159
Unique NameCV885159
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9646 contig Csv1_Contig9646:147..977. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL5_THEAN (60S ribosomal protein L5 OS=Theileria annulata GN=RPL5 PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.305e-64
Identity = 133/264 (50.38%), Postives = 175/264 (66.29%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQ---LDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKA 782
            KTDY AR RL+ QDKNKY++PKYR VVR TNK +  QI+S+++ GD V ASA + EL  YG++VGLTNYAAAYCTGLLLARR+L  L++D+++ G VEA GE Y VE  +N RRPF+ALLDVG+   TTGNRVF            +PHSEKRF G+S D +     DA+ HR  I+  HVA YM  L E++PEKY+  F  Y+K G+++++LE++Y   H  IR +P    ++ K   +H R   K LT +    R V+  KA
Sbjct:   27 KTDYYARRRLVAQDKNKYDSPKYRLVVRLTNKRVICQIVSSTLVGDKVHASADSSELVHYGVKVGLTNYAAAYCTGLLLARRLLTKLKLDSQFVGKVEADGELYHVEEDDNERRPFKALLDVGIKNVTTGNRVFGALKGACDGGLHVPHSEKRFPGYSVDDENNGTYDAQAHRDRIFGTHVANYMEYLKEEDPEKYKKQFSAYLKLGLDSESLEDMYASAHENIRKNP-VLPTKPKRKLKHVREGSKVLTSKGSYVRNVKITKA 289          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL5_DICDI (60S ribosomal protein L5 OS=Dictyostelium discoideum GN=rpl5 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.952e-63
Identity = 121/255 (47.45%), Postives = 170/255 (66.67%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARL 764
            KTDY+ R RLI QDKNKYN+PKYR V R TN D+ AQ++ + I GD VL +AYAHELPR+G++VGLTNYA+ Y TGLLLARR+L  L++   Y+G  +  G+ + V+P +++ RPF+A LDVGL +T+TG +VF            +PH E RFAG++ +SK+L+AE  R YI+  HVA+YM  L  ++ + Y+  F +YIK G+   ++E +Y   H AIRA+P       K   + K  NL K T +++KAR+
Sbjct:   27 KTDYQQRHRLITQDKNKYNSPKYRLVARITNTDVIAQVVYSKIVGDFVLCAAYAHELPRFGVKVGLTNYASCYATGLLLARRLLAKLKLADLYKGAEKVDGKVFLVKPVDDKPRPFKANLDVGLARTSTGAKVFAVLKGAVDGGIYVPHGETRFAGYNAESKKLNAETLRGYIFGKHVASYMTLLQTEDEDAYKKIFSQYIKNGVAPKDIETIYANAHKAIRANPAPAAKSTKSYKDIKSKNLSKRTLKQKKARV 281          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL5B_SCHPO (60S ribosomal protein L5-B OS=Schizosaccharomyces pombe GN=rpl5b PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.952e-63
Identity = 131/257 (50.97%), Postives = 168/257 (65.37%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKP---PAEHKRYNLKKLTYEERKAR 761
            KTDY AR RLI Q KNKYN PKYR VVRF+N+ +T QI+S+ + GD VLA A++ ELPRYG++ GL N+ AAY TGLL+ARR L  + +  +YEG  E  GE    E  E+  RPF+  LDVGL +T+TG+RVF            IPHS  RF GF  ++++LD E  RKYIY GHVA YM  L++D+ E+YQ  F   I  GIE+D LE++Y + +A IR DP+ +KS K      AE  +Y  +KLT EERK R
Sbjct:   27 KTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLTAEERKER 283          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL5A_SCHPO (60S ribosomal protein L5-A OS=Schizosaccharomyces pombe GN=rpl5a PE=1 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 7.416e-63
Identity = 130/257 (50.58%), Postives = 168/257 (65.37%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKP---PAEHKRYNLKKLTYEERKAR 761
            KTDY AR RLI Q KNKYN PKYR VVRF+N+ +T QI+S+ + GD VLA A++ ELPRYG++ GL N+ AAY TGLL+ARR L  + +  +YEG  E  GE    E  E+  RPF+  LDVGL +T+TG+RVF            IPHS  RF GF  ++++LD E  RKYIY GHVA YM  L++D+ E+YQ  F   I  GIE+D LE++Y + +A IR DP+ +KS K      AE  ++  +KLT EERK R
Sbjct:   27 KTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKHTQRKLTAEERKER 283          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL5_EIMTE (60S ribosomal protein L5 OS=Eimeria tenella GN=RPL5 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 8.200e-62
Identity = 129/275 (46.91%), Postives = 176/275 (64.00%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEP-TENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLD----AEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKK-----------PPAEHKRYNLKKLTYEERKARLVERLK 779
            KTDY AR RLI QDKNKYN PKYRFVVR TN  +  Q++ A++ GD ++ SA + EL RYG++VGLTNY+AAY TGLLLARR+LK   +  E++G  + +GE+Y +E  +E RRPF+ +LDVG+V TT GNRVF            IPHS KRF GF+K     D     EVHR  IY  HVA YMRTL E++PE+YQ+ F  YI+  I+ D++E++Y++    IRA+P+  K E +             A+ +     KL  E RK R++++++
Sbjct:   27 KTDYAARRRLILQDKNKYNAPKYRFVVRVTNSRVLCQVMYATLQGDRLVCSADSQELTRYGIKVGLTNYSAAYATGLLLARRLLKQKGLADEFKGLEKPSGEEYHIEEVSEERRPFKCVLDVGIVATTVGNRVFGAMKGACDGGLHIPHSNKRFPGFTKGEDGADDSYNPEVHRARIYGLHVAEYMRTLKEEDPERYQAQFSAYIRNKIDPDSIEKMYEEAFQKIRANPDPVKKEAREVKRVRQGAMIKTAKSQYVRNVKLDKETRKERVLKKIQ 301          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL5_SOLME (60S ribosomal protein L5 (Fragment) OS=Solanum melongena GN=RPL5 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.315e-43
Identity = 84/106 (79.25%), Postives = 92/106 (86.79%), Query Frame = 3
Query:  471 SKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 788
            SKDSKQLDAEVHRKYIY GHVAAYM  LMEDEPEKYQSHF  YIK  +  DN+EE+YKKVHAAIR DP+ KKS+K+PP  HKRYNLKKLTYEERKA+L+ERL ALN
Sbjct:    2 SKDSKQLDAEVHRKYIYGGHVAAYMNILMEDEPEKYQSHFSSYIKADLAPDNIEEMYKKVHAAIRPDPSPKKSQKQPPKTHKRYNLKKLTYEERKAKLIERLNALN 107          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL5_PIG (60S ribosomal protein L5 (Fragment) OS=Sus scrofa GN=RPL5 PE=2 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.508e-31
Identity = 66/98 (67.35%), Postives = 77/98 (78.57%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVE 296
            KTDY AR RL+ QDKNKYNTPKYR +VR TN+DI  QI  A I GD+++ +AYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    M   Y G VE
Sbjct:   27 KTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMXKIYGGQVE 124          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_METS3 (50S ribosomal protein L18P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.208e-16
Identity = 72/223 (32.29%), Postives = 101/223 (45.29%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIE-AD---NLEELYKKVHAA 659
            KTDY AR++L++ DK+       R VVR +N   T Q+I  +  GDI LASA + +L  YG   G +N +A Y TG L A+R L              A G D             A+LD+GL     G++VF            IP+ E        D  +++ E         HVA Y  +L +DE  K    F +Y++RG++ AD   N EE  K +  A
Sbjct:   18 KTDYAARMKLVDYDKS-------RLVVRLSNAHATVQVIDYAPEGDITLASAVSKQLANYGYLGGASNTSAVYLTGYLCAKRAL--------------AKGVD------------SAILDIGLKSAIKGSKVFAALKGAVDAGLDIPYGE----AVLPDESRINGE---------HVANYAESLDDDEIAKL---FSKYLERGLQPADLPKNFEETKKNIDEA 191          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_HYPBU (50S ribosomal protein L18P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.883e-16
Identity = 67/196 (34.18%), Postives = 91/196 (46.43%), Query Frame = 3
Query:   66 KYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKV 650
            K RFVVR TN+ I  Q+I A   GD+ +A+A++ EL  +YG   G  N  AAY TGLL A R LK               G  Y            A+LD+GL + T G RVF            IPHSE           ++  E +R  I   H+A Y   L E  PE Y+  F  Y+ RG+  ++L + +++V
Sbjct:   32 KPRFVVRRTNQYIWVQVIIAKPQGDVTVAAAHSRELVKKYGWLGGTKNTPAAYLTGLLAALRALK--------------AGITY------------AVLDIGLHRPTRGARVFAALKGALDAGLEIPHSE-----------EVLPEEYR--IRGEHIAKYAAMLKEQNPELYEKRFSLYLARGLNPEDLPQHFEEV 188          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_METJA (50S ribosomal protein L18P OS=Methanocaldococcus jannaschii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.520e-15
Identity = 61/220 (27.73%), Postives = 97/220 (44.09%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAI 662
            KTDYR R++L+   K        R V R T     AQI+     GD  + SA++ EL + G +    N  +AY TG LL ++ L         +G+ EA                  +LD+GL + T GN +F            IPH E+         +++  E         H+ AY   L E + E+Y+  F +Y+++G+E + L E ++++ A I
Sbjct:   18 KTDYRKRLKLLLSRKP-------RLVARRTLNHCIAQIVLYDEKGDKTVVSAHSRELIKLGYKGHTGNLPSAYLTGYLLGKKALA--------KGYTEA------------------VLDIGLHRATKGNAIFAILKGALDAGMEIPHGEE----ILPSEERIRGE---------HIKAYAEMLKEQDEERYKKQFSKYLEKGLEPEKLPEHFEEIKAKI 191          
The following BLAST results are available for this feature:
BLAST of CV885159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
RL5_THEAN2.305e-6450.3860S ribosomal protein L5 OS=Theileria annulata GN=... [more]
RL5_DICDI1.952e-6347.4560S ribosomal protein L5 OS=Dictyostelium discoide... [more]
RL5B_SCHPO1.952e-6350.9760S ribosomal protein L5-B OS=Schizosaccharomyces ... [more]
RL5A_SCHPO7.416e-6350.5860S ribosomal protein L5-A OS=Schizosaccharomyces ... [more]
RL5_EIMTE8.200e-6246.9160S ribosomal protein L5 OS=Eimeria tenella GN=RPL... [more]
RL5_SOLME1.315e-4379.2560S ribosomal protein L5 (Fragment) OS=Solanum mel... [more]
RL5_PIG1.508e-3167.3560S ribosomal protein L5 (Fragment) OS=Sus scrofa ... [more]
RL18_METS35.208e-1632.2950S ribosomal protein L18P OS=Methanobrevibacter s... [more]
RL18_HYPBU8.883e-1634.1850S ribosomal protein L18P OS=Hyperthermus butylic... [more]
RL18_METJA7.520e-1527.7350S ribosomal protein L18P OS=Methanocaldococcus j... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885159 ID=CV885159; Name=CV885159; organism=Citrus sinensis; type=EST; length=831bp
GAAAGACTGACTATCGGGCTAGGATTCGCCTGATCAACCAAGATAAAAAC
AAGTACAACACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAACAAAGA
TATCACTGCACAAATTATATCTGCCAGCATAGCCGGGGATATAGTCCTTG
CATCTGCTTATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTGGGCCTC
ACTAATTATGCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCGCCGAGT
CCTGAAAATGCTTGAGATGGATGCTGAGTATGAGGGGCACGTTGAGGCAA
CAGGAGAGGACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCTTTCCGT
GCCCTGCTTGATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTCTT
TGGCGCTCTTAAGGGTGCATTGGATGGTGGACTTGATATCCCTCACAGTG
AGAAGAGATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGACGCTGAA
GTTCACCGTAAATACATCTATTGTGGTCATGTCGCTGCCTACATGAGGAC
TTTGATGGAAGATGAGCCAGAGAAGTACCAGTCTCACTTTTGTGAATACA
TCAAGAGAGGTATTGAGGCTGATAACCTTGAAGAGTTGTACAAGAAGGTA
CATGCTGCCATCCGTGCAGACCCTAACCAGAAGAAATCTGAGAAGAAGCC
TCCAGCAGAGCACAAGAGGTACAACCTGAAGAAACTGACGTACGAGGAAA
GGAAAGCCAGGTTAGTTGAAAGGTTGAAAGCACTCAATGCTGCTGAAGAC
GATGAAGCCGATGAGTGAATGCGATACTAGG
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