CV885159

Overview
NameCV885159
Unique NameCV885159
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_METTH (50S ribosomal protein L18P OS=Methanobacterium thermoautotrophicum GN=rpl18p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.283e-14
Identity = 66/220 (30.00%), Postives = 96/220 (43.64%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAI 662
            KTDYRAR +++        T K R VVR T   + AQII+  + GD  L SA++ +L + G   G +N AAAY TG L  +R LK        EG  E                  A+LD+GL     G++VF            +PH E        D  ++  E         H+  Y  +L E+E  K    F +Y++RG+   +L E + ++   I
Sbjct:   18 KTDYRARYKMVE-------TGKSRLVVRITTYHVIAQIINVGMNGDETLVSAHSKQLQKMGWLGGTSNTAAAYLTGYLCGKRALK--------EGIEE------------------AVLDIGLRPAIRGSKVFAALKGAVDAGLNVPHGE----SVLPDESRIRGE---------HIMEYAESLDEEELRK---RFSKYLERGLSPVDLPEHFDEIKKRI 188          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_AERPE (50S ribosomal protein L18P OS=Aeropyrum pernix GN=rpl18p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.283e-14
Identity = 64/221 (28.96%), Postives = 92/221 (41.63%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAI 662
            KT+Y  R RL+   K        R  VR +N+ +  Q + A I GD V+A+A++ EL  ++G +    N  AAY TG L   R L+                          +    A+LDVGL K   G+RVF            IPHSE+   G  +             + C H+A +   L E+  E YQ  F  Y+ RG+  + L    ++V  AI
Sbjct:   18 KTNYYRRFRLVKSGKP-------RMAVRISNEYLWVQFLEARIEGDRVIAAAHSRELIKKFGWKGDGNNTCAAYLTGYLAGLRALE--------------------------KGVREAVLDVGLHKPVKGSRVFAALKGALDAGVEIPHSEEILPGDER-------------VRCEHIAQWAEALKEENAELYQRQFSRYLDRGLNPEELPGHVEEVKKAI 192          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_PYRAR (50S ribosomal protein L18P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.675e-14
Identity = 63/220 (28.64%), Postives = 94/220 (42.73%), Query Frame = 3
Query:    6 TDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIR 665
            T+YR R +L+   K        R VVR TNK I AQI+ A   GD  +A A    L ++G      N +AAY  GL++             Y+  +    E              A+LD+GL + T G RVF            IPH E+      +             I   H+A Y   L E+ P+ Y++ F  Y++RG+E + L + +++V  AI+
Sbjct:   19 TNYRKRRKLVISKKP-------RLVVRKTNKHIIAQIVVAKPIGDETVAGADTRILTKFGWRGDENNTSAAYLLGLVVG------------YKARMRGVEE--------------AILDIGLHRPTPGARVFAVLKGALDAGLKIPHGEEVLPSDER-------------IRGEHIAEYAAKLKEENPDAYKARFSRYLQRGLEPERLPDHFEEVRKAIQ 192          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_META3 (50S ribosomal protein L18P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.858e-14
Identity = 63/220 (28.64%), Postives = 96/220 (43.64%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAI 662
            KT++R R++L+        TP  R V R +  +I AQI+     GD ++ SA++ E+ + G +    N  AAY TGLLL ++ LK        EG+ E                  A+LD+GL   T G  V             IPHSE+   G  +             I   HV  Y   L  ++ EKY   F +Y+K G+  ++L E ++++   I
Sbjct:   18 KTNFRLRLKLLLS-----RTP--RLVARKSLNNIVAQIVEYDEVGDKIVVSAHSKEIVKLGYKGHCGNVPAAYLTGLLLGKKALK--------EGNEE------------------AILDLGLNSATKGAAVLAILKGAVDAGMDIPHSEEILPGEDR-------------INGSHVKEYAELLKVEDEEKYNKQFSKYLKNGLNPEDLPEHFEEIKEKI 191          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_THENV (50S ribosomal protein L18P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.732e-14
Identity = 64/219 (29.22%), Postives = 93/219 (42.47%), Query Frame = 3
Query:    6 TDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNL----EELYKKV 650
            T+YR R RLI   K        R VVR TNK I AQ++ A   GD+ +       L ++G      N +AAY  GL+            A Y+  +    E              A+LD+GL +   G+RVF            IPH E+      + S +             HVA Y   L E+ PE Y++ F  Y++RG++ ++L    EE+ KK+
Sbjct:   19 TNYRKRRRLILSRKP-------RLVVRKTNKHIIAQVVVAKPQGDVTIVGVDTRALAKFGWRGDENNTSAAYLLGLV------------AGYKARLRGVRE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPHGEEVLPEDDRVSGK-------------HVAEYAAKLKEENPELYKARFSRYLQRGVQPEDLPKHFEEVKKKI 191          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_METMP (50S ribosomal protein L18P OS=Methanococcus maripaludis GN=rpl18p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.389e-13
Identity = 64/220 (29.09%), Postives = 99/220 (45.00%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNL----EELYKKV 650
            KTD+R R+ L+   K        R V R +  ++TAQ+++    GD+VL SA++ EL + G +    N  AAY TGLLL  + +K                ED             A+LD GL + T G  +F            IPH +K  A    D ++L+           HV  Y  +L ED  + Y+  F +Y+++G+  ++L    EEL +K+
Sbjct:   18 KTDFRQRLGLLLSGKP-------RLVARKSLNNVTAQLMAYDEKGDVVLVSAHSKELVKMGYKGHCGNLPAAYLTGLLLGAKAVK----------------EDVK----------EAVLDKGLHRATKGAAIFAVLKGALDAGMDIPHGDKIIA----DEERLNGT---------HVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDLPEHVEELKEKI 190          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_PYRIL (50S ribosomal protein L18P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.039e-13
Identity = 59/219 (26.94%), Postives = 91/219 (41.55%), Query Frame = 3
Query:    6 TDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNL----EELYKKV 650
            T+YR R +L+   K        R VVR TNK I AQ++ A   GD+ +       L ++G +    N  AAY  GL++             Y+  +    E              A+LD+GL +   G+RVF            IPH E+      + S +             H+A Y   L ++ PE Y++ F  Y++RG+  + L    EE+ KK+
Sbjct:   19 TNYRKRRKLLLSKKP-------RLVVRKTNKHIIAQVVVAKPQGDVTIVGIDTRALAKFGWKGDENNTPAAYLLGLIVG------------YKARIRGVKE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPHGEEIIPSDDRISGK-------------HIAEYAEKLKKENPELYKTRFSRYLQRGLAPEELPTHFEEVKKKI 191          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_METM5 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.193e-13
Identity = 61/211 (28.91%), Postives = 95/211 (45.02%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEE 635
            KTD+R R+ L+   K        R V R +  ++TAQ++S    GD+VL SA+  EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH ++  A    + ++L+           HV  Y  +L ED  + Y+  F +Y+++G+  ++L E
Sbjct:   18 KTDFRQRLGLLLSGKP-------RLVARKSLNNVTAQLMSYDEKGDVVLVSAHTKELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----EEERLNGT---------HVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDLPE 181          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_METM7 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.201e-12
Identity = 63/220 (28.64%), Postives = 100/220 (45.45%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNL----EELYKKV 650
            KTD+R R+ L+   K        R V R +  ++ AQ+++    GD+VL SA++ EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH ++  A    D ++L+           HV  Y  +L ED  + Y+  F +Y+++G+  ++L    EEL +K+
Sbjct:   18 KTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLNGT---------HVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDLPEHVEELKEKI 190          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_METM6 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.201e-12
Identity = 63/220 (28.64%), Postives = 100/220 (45.45%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNL----EELYKKV 650
            KTD+R R+ L+   K        R V R +  ++ AQ+++    GD+VL SA++ EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH ++  A    D ++L+           HV  Y  +L ED  + Y+  F +Y+++G+  ++L    EEL +K+
Sbjct:   18 KTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLNGT---------HVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDLPEHVEELKEKI 190          
The following BLAST results are available for this feature:
BLAST of CV885159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
RL18_METTH1.283e-1430.0050S ribosomal protein L18P OS=Methanobacterium the... [more]
RL18_AERPE1.283e-1428.9650S ribosomal protein L18P OS=Aeropyrum pernix GN=... [more]
RL18_PYRAR1.675e-1428.6450S ribosomal protein L18P OS=Pyrobaculum arsenati... [more]
RL18_META32.858e-1428.6450S ribosomal protein L18P OS=Methanococcus aeolic... [more]
RL18_THENV3.732e-1429.2250S ribosomal protein L18P OS=Thermoproteus neutro... [more]
RL18_METMP5.389e-1329.0950S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_PYRIL7.039e-1326.9450S ribosomal protein L18P OS=Pyrobaculum islandic... [more]
RL18_METM59.193e-1328.9150S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_METM71.201e-1228.6450S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_METM61.201e-1228.6450S ribosomal protein L18P OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885159 ID=CV885159; Name=CV885159; organism=Citrus sinensis; type=EST; length=831bp
GAAAGACTGACTATCGGGCTAGGATTCGCCTGATCAACCAAGATAAAAAC
AAGTACAACACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAACAAAGA
TATCACTGCACAAATTATATCTGCCAGCATAGCCGGGGATATAGTCCTTG
CATCTGCTTATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTGGGCCTC
ACTAATTATGCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCGCCGAGT
CCTGAAAATGCTTGAGATGGATGCTGAGTATGAGGGGCACGTTGAGGCAA
CAGGAGAGGACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCTTTCCGT
GCCCTGCTTGATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTCTT
TGGCGCTCTTAAGGGTGCATTGGATGGTGGACTTGATATCCCTCACAGTG
AGAAGAGATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGACGCTGAA
GTTCACCGTAAATACATCTATTGTGGTCATGTCGCTGCCTACATGAGGAC
TTTGATGGAAGATGAGCCAGAGAAGTACCAGTCTCACTTTTGTGAATACA
TCAAGAGAGGTATTGAGGCTGATAACCTTGAAGAGTTGTACAAGAAGGTA
CATGCTGCCATCCGTGCAGACCCTAACCAGAAGAAATCTGAGAAGAAGCC
TCCAGCAGAGCACAAGAGGTACAACCTGAAGAAACTGACGTACGAGGAAA
GGAAAGCCAGGTTAGTTGAAAGGTTGAAAGCACTCAATGCTGCTGAAGAC
GATGAAGCCGATGAGTGAATGCGATACTAGG
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