CV885159
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_METTH (50S ribosomal protein L18P OS=Methanobacterium thermoautotrophicum GN=rpl18p PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.283e-14 Identity = 66/220 (30.00%), Postives = 96/220 (43.64%), Query Frame = 3 Query: 3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAI 662 KTDYRAR +++ T K R VVR T + AQII+ + GD L SA++ +L + G G +N AAAY TG L +R LK EG E A+LD+GL G++VF +PH E D ++ E H+ Y +L E+E K F +Y++RG+ +L E + ++ I Sbjct: 18 KTDYRARYKMVE-------TGKSRLVVRITTYHVIAQIINVGMNGDETLVSAHSKQLQKMGWLGGTSNTAAAYLTGYLCGKRALK--------EGIEE------------------AVLDIGLRPAIRGSKVFAALKGAVDAGLNVPHGE----SVLPDESRIRGE---------HIMEYAESLDEEELRK---RFSKYLERGLSPVDLPEHFDEIKKRI 188
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_AERPE (50S ribosomal protein L18P OS=Aeropyrum pernix GN=rpl18p PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.283e-14 Identity = 64/221 (28.96%), Postives = 92/221 (41.63%), Query Frame = 3 Query: 3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAI 662 KT+Y R RL+ K R VR +N+ + Q + A I GD V+A+A++ EL ++G + N AAY TG L R L+ + A+LDVGL K G+RVF IPHSE+ G + + C H+A + L E+ E YQ F Y+ RG+ + L ++V AI Sbjct: 18 KTNYYRRFRLVKSGKP-------RMAVRISNEYLWVQFLEARIEGDRVIAAAHSRELIKKFGWKGDGNNTCAAYLTGYLAGLRALE--------------------------KGVREAVLDVGLHKPVKGSRVFAALKGALDAGVEIPHSEEILPGDER-------------VRCEHIAQWAEALKEENAELYQRQFSRYLDRGLNPEELPGHVEEVKKAI 192
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_PYRAR (50S ribosomal protein L18P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl18p PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.675e-14 Identity = 63/220 (28.64%), Postives = 94/220 (42.73%), Query Frame = 3 Query: 6 TDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIR 665 T+YR R +L+ K R VVR TNK I AQI+ A GD +A A L ++G N +AAY GL++ Y+ + E A+LD+GL + T G RVF IPH E+ + I H+A Y L E+ P+ Y++ F Y++RG+E + L + +++V AI+ Sbjct: 19 TNYRKRRKLVISKKP-------RLVVRKTNKHIIAQIVVAKPIGDETVAGADTRILTKFGWRGDENNTSAAYLLGLVVG------------YKARMRGVEE--------------AILDIGLHRPTPGARVFAVLKGALDAGLKIPHGEEVLPSDER-------------IRGEHIAEYAAKLKEENPDAYKARFSRYLQRGLEPERLPDHFEEVRKAIQ 192
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_META3 (50S ribosomal protein L18P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl18p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.858e-14 Identity = 63/220 (28.64%), Postives = 96/220 (43.64%), Query Frame = 3 Query: 3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAI 662 KT++R R++L+ TP R V R + +I AQI+ GD ++ SA++ E+ + G + N AAY TGLLL ++ LK EG+ E A+LD+GL T G V IPHSE+ G + I HV Y L ++ EKY F +Y+K G+ ++L E ++++ I Sbjct: 18 KTNFRLRLKLLLS-----RTP--RLVARKSLNNIVAQIVEYDEVGDKIVVSAHSKEIVKLGYKGHCGNVPAAYLTGLLLGKKALK--------EGNEE------------------AILDLGLNSATKGAAVLAILKGAVDAGMDIPHSEEILPGEDR-------------INGSHVKEYAELLKVEDEEKYNKQFSKYLKNGLNPEDLPEHFEEIKEKI 191
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_THENV (50S ribosomal protein L18P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl18p PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.732e-14 Identity = 64/219 (29.22%), Postives = 93/219 (42.47%), Query Frame = 3 Query: 6 TDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNL----EELYKKV 650 T+YR R RLI K R VVR TNK I AQ++ A GD+ + L ++G N +AAY GL+ A Y+ + E A+LD+GL + G+RVF IPH E+ + S + HVA Y L E+ PE Y++ F Y++RG++ ++L EE+ KK+ Sbjct: 19 TNYRKRRRLILSRKP-------RLVVRKTNKHIIAQVVVAKPQGDVTIVGVDTRALAKFGWRGDENNTSAAYLLGLV------------AGYKARLRGVRE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPHGEEVLPEDDRVSGK-------------HVAEYAAKLKEENPELYKARFSRYLQRGVQPEDLPKHFEEVKKKI 191
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_METMP (50S ribosomal protein L18P OS=Methanococcus maripaludis GN=rpl18p PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.389e-13 Identity = 64/220 (29.09%), Postives = 99/220 (45.00%), Query Frame = 3 Query: 3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNL----EELYKKV 650 KTD+R R+ L+ K R V R + ++TAQ+++ GD+VL SA++ EL + G + N AAY TGLLL + +K ED A+LD GL + T G +F IPH +K A D ++L+ HV Y +L ED + Y+ F +Y+++G+ ++L EEL +K+ Sbjct: 18 KTDFRQRLGLLLSGKP-------RLVARKSLNNVTAQLMAYDEKGDVVLVSAHSKELVKMGYKGHCGNLPAAYLTGLLLGAKAVK----------------EDVK----------EAVLDKGLHRATKGAAIFAVLKGALDAGMDIPHGDKIIA----DEERLNGT---------HVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDLPEHVEELKEKI 190
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_PYRIL (50S ribosomal protein L18P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl18p PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 7.039e-13 Identity = 59/219 (26.94%), Postives = 91/219 (41.55%), Query Frame = 3 Query: 6 TDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNL----EELYKKV 650 T+YR R +L+ K R VVR TNK I AQ++ A GD+ + L ++G + N AAY GL++ Y+ + E A+LD+GL + G+RVF IPH E+ + S + H+A Y L ++ PE Y++ F Y++RG+ + L EE+ KK+ Sbjct: 19 TNYRKRRKLLLSKKP-------RLVVRKTNKHIIAQVVVAKPQGDVTIVGIDTRALAKFGWKGDENNTPAAYLLGLIVG------------YKARIRGVKE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPHGEEIIPSDDRISGK-------------HIAEYAEKLKKENPELYKTRFSRYLQRGLAPEELPTHFEEVKKKI 191
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_METM5 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl18p PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 9.193e-13 Identity = 61/211 (28.91%), Postives = 95/211 (45.02%), Query Frame = 3 Query: 3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEE 635 KTD+R R+ L+ K R V R + ++TAQ++S GD+VL SA+ EL + G + N AAY TGLLL ++ +K EG E A+LD GL + T G +F IPH ++ A + ++L+ HV Y +L ED + Y+ F +Y+++G+ ++L E Sbjct: 18 KTDFRQRLGLLLSGKP-------RLVARKSLNNVTAQLMSYDEKGDVVLVSAHTKELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----EEERLNGT---------HVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDLPE 181
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_METM7 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.201e-12 Identity = 63/220 (28.64%), Postives = 100/220 (45.45%), Query Frame = 3 Query: 3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNL----EELYKKV 650 KTD+R R+ L+ K R V R + ++ AQ+++ GD+VL SA++ EL + G + N AAY TGLLL ++ +K EG E A+LD GL + T G +F IPH ++ A D ++L+ HV Y +L ED + Y+ F +Y+++G+ ++L EEL +K+ Sbjct: 18 KTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLNGT---------HVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDLPEHVEELKEKI 190
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_METM6 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.201e-12 Identity = 63/220 (28.64%), Postives = 100/220 (45.45%), Query Frame = 3 Query: 3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNL----EELYKKV 650 KTD+R R+ L+ K R V R + ++ AQ+++ GD+VL SA++ EL + G + N AAY TGLLL ++ +K EG E A+LD GL + T G +F IPH ++ A D ++L+ HV Y +L ED + Y+ F +Y+++G+ ++L EEL +K+ Sbjct: 18 KTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLNGT---------HVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDLPEHVEELKEKI 190 The following BLAST results are available for this feature:
BLAST of CV885159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885159 ID=CV885159; Name=CV885159; organism=Citrus sinensis; type=EST; length=831bpback to top |