CV885159

Overview
NameCV885159
Unique NameCV885159
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9646 contig Csv1_Contig9646:147..977. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_STAMF (50S ribosomal protein L18P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.568e-12
Identity = 65/217 (29.95%), Postives = 92/217 (42.40%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKV 650
            KT+Y  R +++            RFVVR T K I  QI++A   GDI +A+A++ EL  +YG   GL N  AAY TGLL A R LK               G  Y+V             D+GL   T G +VF            +P  E+      +             I   H+A++ + L E  PE Y+  F +YI RG +   L   +++V
Sbjct:   18 KTNYYKRYKMVLSGHP-------RFVVRKTLKHIIVQIVTAKPEGDITIAAAHSRELYKKYGWMGGLGNTPAAYLTGLLAALRGLK--------------AGIKYAVP------------DIGLHVPTRGAKVFAAIKAANDVGLKVPVGEEVVPSDDR-------------IRGEHIASWAKMLQEASPEAYERFFSKYISRGFDPTQLPTHFEEV 188          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_METVS (50S ribosomal protein L18P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.568e-12
Identity = 63/220 (28.64%), Postives = 99/220 (45.00%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAI 662
            KTD+R R+ L+   K        R V R +  +I AQ+++    GDIVL SA++ EL + G +    N  AAY TGLLL ++ ++        EG  E                  A+LD GL + T G  +F            IP  E+  A    D ++L+           H+  Y   L EDE E Y+  F +Y+++G+  ++L E ++++   I
Sbjct:   18 KTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPCGEEIIA----DEERLNGT---------HIKQYAELLKEDE-EAYKKQFSKYLEKGLNPEDLPEHFEELKGKI 190          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_METVA (50S ribosomal protein L18P OS=Methanococcus vannielii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.568e-12
Identity = 63/220 (28.64%), Postives = 99/220 (45.00%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAI 662
            KTD+R R+ L+   K        R V R +  +I AQ+++    GDIVL SA++ EL + G +    N  AAY TGLLL ++ ++        EG  E                  A+LD GL + T G  +F            IP  E+  A    D ++L+           H+  Y   L EDE E Y+  F +Y+++G+  ++L E ++++   I
Sbjct:   20 KTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPCGEEIIA----DEERLNGT---------HIKQYAELLKEDE-EAYKKQFSKYLEKGLNPEDLPEHFEELKGKI 192          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_METKA (50S ribosomal protein L18P OS=Methanopyrus kandleri GN=rpl18p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.675e-12
Identity = 62/224 (27.68%), Postives = 96/224 (42.86%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELP-RYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRAD 671
            KT+Y  R  LI  D         R V R T     AQI+  +  GD+ LASA++ EL  ++G +    N  AAY TG L   R L+                          R   RA++D+GL +   G+RVF            IPH E+      +             I   H+A   R + E++PE+Y+  F +Y++RG++ + L E +++V + I  +
Sbjct:   21 KTNYYKRRELIKADAP-------RLVARKTLNHNIAQIVDFAPHGDVTLASAHSIELRNKFGWKGHCGNTPAAYLTGYLCGLRALE--------------------------RGIERAVIDIGLHRPVRGSRVFAMLKGALDAGMDIPHGEEVLPPEDR-------------IRGEHIANLARQIKEEDPEEYERRFSKYLERGLKPEELPEHFEEVKSKIEEE 198          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_METHJ (50S ribosomal protein L18P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.493e-12
Identity = 55/151 (36.42%), Postives = 71/151 (47.02%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEK 455
            +T+Y AR RL+   K        R VVR TN+ I  QII+A + GD    +A + EL ++G E  L N  AAY TG+LLA R LK     A  EG                     A+LD+GL + T G RVF            IPH+E+
Sbjct:   18 RTNYHARTRLVVATKP-------RMVVRKTNRHIICQIITAHMEGDRTHVAANSSELRKFGYEGSLNNTPAAYLTGMLLAVRALK-----AGQEG---------------------AILDIGLHRATPGARVFAALKGAVEAGFDIPHNEE 135          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_PYRCJ (50S ribosomal protein L18P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.959e-12
Identity = 61/219 (27.85%), Postives = 93/219 (42.47%), Query Frame = 3
Query:    6 TDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNL----EELYKKV 650
            T+YR R +L+   K        R VVR TNK + AQI+ A   GD  +       L ++G +    N +AAY  GL++             Y+   +   E              A+LD+GL + T G RVF            +PH E+         +++  E         HVA Y + L E+ PE Y++ F  Y++RG+  + L    EE+ KK+
Sbjct:   19 TNYRKRRKLLLSRKP-------RLVVRKTNKHLIAQIVIARPHGDETVVGLDTRVLSKFGWKGDENNTSAAYLLGLIVG------------YKARAKGIKE--------------AILDIGLHRPTPGARVFAVMKGVIDAGVEVPHGEE----VVPSEERIRGE---------HVAEYAKRLKEEAPEAYKARFSRYLQRGLPPEELPSHFEEVKKKI 191          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_KORCO (50S ribosomal protein L18P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.734e-11
Identity = 63/225 (28.00%), Postives = 93/225 (41.33%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPN 677
            KTDY  R+ L+   K        R VVR TN+ I  Q I     GD V+A A++ EL +YG   G  N  AAY TG L A R        A+  G  E                  A+LD+G   +T G+R++            +PHS +       D  ++  E         H+A++   L  +E    +  F +Y++RG +   + E ++ V   I A  N
Sbjct:   18 KTDYMKRLALLKSRKP-------RVVVRRTNRYIIVQFIGFKGEGDEVIAYAFSKELEKYGWPYGGKNLPAAYLTGYLAAMR--------AKKAGVTE------------------AILDIGRFPSTKGSRLYAALKGVLDAGIDVPHSPE----ILPDEDRIRGE---------HIASFAEKL--EEEGSLERQFSDYLRRGADPKIISEAFESVLERISAMSN 194          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_IGNH4 (50S ribosomal protein L18P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.734e-11
Identity = 57/203 (28.08%), Postives = 91/203 (44.83%), Query Frame = 3
Query:   66 KYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRAD 671
            K RFVVR +NK +  Q+I  +  GD V+A+A++ EL + YG +    +  A Y TG+L A R  K               G  Y+V             D+GL K T G RVF            +P  +        D  ++  E         H+A+Y  +L  + PE+YQ  F + ++RG++ ++  + +++V A I  D
Sbjct:   32 KPRFVVRKSNKYVWVQVIEFAPEGDKVIAAAHSKELEKKYGWKGYGNSLPAVYLTGMLAALRAKK--------------AGIQYAVP------------DIGLHKPTKGARVFAAIKAANDVGLEVPVGD-----VVPDESRIRGE---------HIASYAESLKNENPEEYQRRFAKLLERGLKPEDYPKHFEEVKAKILED 194          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_ARCFU (50S ribosomal protein L18P OS=Archaeoglobus fulgidus GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.734e-11
Identity = 62/209 (29.67%), Postives = 93/209 (44.50%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNL 629
            KT+YR R++L+   K        R VVR TN+ + AQI+  +  GD V+    +  L  +G +  L N  AAY TG+L+A++ L+            +  GE              A+LD+GL   T G+RVF            +PHS++       D  ++  E         H+AAY     E  PE+    F EY KRG++  +L
Sbjct:   20 KTNYRKRLKLLLSRKP-------RLVVRITNRRVIAQIVEYAPEGDRVVVGVDSAMLREFGWKGDLNNTPAAYLTGILIAKKALQ------------KGIGE--------------AVLDIGLHTPTRGSRVFAVLRGAVEGGLEVPHSDE----VLPDDSRIRGE---------HIAAY----YEMNPER----FGEYEKRGLKPSDL 174          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_HALSA (50S ribosomal protein L18P OS=Halobacterium salinarium GN=rpl18p PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.264e-11
Identity = 55/189 (29.10%), Postives = 81/189 (42.86%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEP 569
            +TDY  R+RL+   K        R V R +NK +TAQ+++    GD  +ASA++ +L  YG      N  AAY TGLL  +R +                  D  VE         A+LD+GL   T G++VF            +PH++   A +S+   +             H+A Y  +L  DEP
Sbjct:   18 RTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSRTRGE-------------HIAEYAESL--DEP 158          
The following BLAST results are available for this feature:
BLAST of CV885159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
RL18_STAMF1.568e-1229.9550S ribosomal protein L18P OS=Staphylothermus mari... [more]
RL18_METVS1.568e-1228.6450S ribosomal protein L18P OS=Methanococcus vannie... [more]
RL18_METVA1.568e-1228.6450S ribosomal protein L18P OS=Methanococcus vannie... [more]
RL18_METKA2.675e-1227.6850S ribosomal protein L18P OS=Methanopyrus kandler... [more]
RL18_METHJ3.493e-1236.4250S ribosomal protein L18P OS=Methanospirillum hun... [more]
RL18_PYRCJ5.959e-1227.8550S ribosomal protein L18P OS=Pyrobaculum calidifo... [more]
RL18_KORCO1.734e-1128.0050S ribosomal protein L18P OS=Korarchaeum cryptofi... [more]
RL18_IGNH41.734e-1128.0850S ribosomal protein L18P OS=Ignicoccus hospitali... [more]
RL18_ARCFU1.734e-1129.6750S ribosomal protein L18P OS=Archaeoglobus fulgid... [more]
RL18_HALSA2.264e-1129.1050S ribosomal protein L18P OS=Halobacterium salina... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885159 ID=CV885159; Name=CV885159; organism=Citrus sinensis; type=EST; length=831bp
GAAAGACTGACTATCGGGCTAGGATTCGCCTGATCAACCAAGATAAAAAC
AAGTACAACACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAACAAAGA
TATCACTGCACAAATTATATCTGCCAGCATAGCCGGGGATATAGTCCTTG
CATCTGCTTATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTGGGCCTC
ACTAATTATGCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCGCCGAGT
CCTGAAAATGCTTGAGATGGATGCTGAGTATGAGGGGCACGTTGAGGCAA
CAGGAGAGGACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCTTTCCGT
GCCCTGCTTGATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTCTT
TGGCGCTCTTAAGGGTGCATTGGATGGTGGACTTGATATCCCTCACAGTG
AGAAGAGATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGACGCTGAA
GTTCACCGTAAATACATCTATTGTGGTCATGTCGCTGCCTACATGAGGAC
TTTGATGGAAGATGAGCCAGAGAAGTACCAGTCTCACTTTTGTGAATACA
TCAAGAGAGGTATTGAGGCTGATAACCTTGAAGAGTTGTACAAGAAGGTA
CATGCTGCCATCCGTGCAGACCCTAACCAGAAGAAATCTGAGAAGAAGCC
TCCAGCAGAGCACAAGAGGTACAACCTGAAGAAACTGACGTACGAGGAAA
GGAAAGCCAGGTTAGTTGAAAGGTTGAAAGCACTCAATGCTGCTGAAGAC
GATGAAGCCGATGAGTGAATGCGATACTAGG
back to top