CV885159
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_STAMF (50S ribosomal protein L18P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.568e-12 Identity = 65/217 (29.95%), Postives = 92/217 (42.40%), Query Frame = 3 Query: 3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKV 650 KT+Y R +++ RFVVR T K I QI++A GDI +A+A++ EL +YG GL N AAY TGLL A R LK G Y+V D+GL T G +VF +P E+ + I H+A++ + L E PE Y+ F +YI RG + L +++V Sbjct: 18 KTNYYKRYKMVLSGHP-------RFVVRKTLKHIIVQIVTAKPEGDITIAAAHSRELYKKYGWMGGLGNTPAAYLTGLLAALRGLK--------------AGIKYAVP------------DIGLHVPTRGAKVFAAIKAANDVGLKVPVGEEVVPSDDR-------------IRGEHIASWAKMLQEASPEAYERFFSKYISRGFDPTQLPTHFEEV 188
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_METVS (50S ribosomal protein L18P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.568e-12 Identity = 63/220 (28.64%), Postives = 99/220 (45.00%), Query Frame = 3 Query: 3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAI 662 KTD+R R+ L+ K R V R + +I AQ+++ GDIVL SA++ EL + G + N AAY TGLLL ++ ++ EG E A+LD GL + T G +F IP E+ A D ++L+ H+ Y L EDE E Y+ F +Y+++G+ ++L E ++++ I Sbjct: 18 KTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPCGEEIIA----DEERLNGT---------HIKQYAELLKEDE-EAYKKQFSKYLEKGLNPEDLPEHFEELKGKI 190
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_METVA (50S ribosomal protein L18P OS=Methanococcus vannielii GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.568e-12 Identity = 63/220 (28.64%), Postives = 99/220 (45.00%), Query Frame = 3 Query: 3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAI 662 KTD+R R+ L+ K R V R + +I AQ+++ GDIVL SA++ EL + G + N AAY TGLLL ++ ++ EG E A+LD GL + T G +F IP E+ A D ++L+ H+ Y L EDE E Y+ F +Y+++G+ ++L E ++++ I Sbjct: 20 KTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPCGEEIIA----DEERLNGT---------HIKQYAELLKEDE-EAYKKQFSKYLEKGLNPEDLPEHFEELKGKI 192
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_METKA (50S ribosomal protein L18P OS=Methanopyrus kandleri GN=rpl18p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.675e-12 Identity = 62/224 (27.68%), Postives = 96/224 (42.86%), Query Frame = 3 Query: 3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELP-RYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRAD 671 KT+Y R LI D R V R T AQI+ + GD+ LASA++ EL ++G + N AAY TG L R L+ R RA++D+GL + G+RVF IPH E+ + I H+A R + E++PE+Y+ F +Y++RG++ + L E +++V + I + Sbjct: 21 KTNYYKRRELIKADAP-------RLVARKTLNHNIAQIVDFAPHGDVTLASAHSIELRNKFGWKGHCGNTPAAYLTGYLCGLRALE--------------------------RGIERAVIDIGLHRPVRGSRVFAMLKGALDAGMDIPHGEEVLPPEDR-------------IRGEHIANLARQIKEEDPEEYERRFSKYLERGLKPEELPEHFEEVKSKIEEE 198
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_METHJ (50S ribosomal protein L18P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl18p PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.493e-12 Identity = 55/151 (36.42%), Postives = 71/151 (47.02%), Query Frame = 3 Query: 3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEK 455 +T+Y AR RL+ K R VVR TN+ I QII+A + GD +A + EL ++G E L N AAY TG+LLA R LK A EG A+LD+GL + T G RVF IPH+E+ Sbjct: 18 RTNYHARTRLVVATKP-------RMVVRKTNRHIICQIITAHMEGDRTHVAANSSELRKFGYEGSLNNTPAAYLTGMLLAVRALK-----AGQEG---------------------AILDIGLHRATPGARVFAALKGAVEAGFDIPHNEE 135
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_PYRCJ (50S ribosomal protein L18P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl18p PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.959e-12 Identity = 61/219 (27.85%), Postives = 93/219 (42.47%), Query Frame = 3 Query: 6 TDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNL----EELYKKV 650 T+YR R +L+ K R VVR TNK + AQI+ A GD + L ++G + N +AAY GL++ Y+ + E A+LD+GL + T G RVF +PH E+ +++ E HVA Y + L E+ PE Y++ F Y++RG+ + L EE+ KK+ Sbjct: 19 TNYRKRRKLLLSRKP-------RLVVRKTNKHLIAQIVIARPHGDETVVGLDTRVLSKFGWKGDENNTSAAYLLGLIVG------------YKARAKGIKE--------------AILDIGLHRPTPGARVFAVMKGVIDAGVEVPHGEE----VVPSEERIRGE---------HVAEYAKRLKEEAPEAYKARFSRYLQRGLPPEELPSHFEEVKKKI 191
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_KORCO (50S ribosomal protein L18P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl18p PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.734e-11 Identity = 63/225 (28.00%), Postives = 93/225 (41.33%), Query Frame = 3 Query: 3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPN 677 KTDY R+ L+ K R VVR TN+ I Q I GD V+A A++ EL +YG G N AAY TG L A R A+ G E A+LD+G +T G+R++ +PHS + D ++ E H+A++ L +E + F +Y++RG + + E ++ V I A N Sbjct: 18 KTDYMKRLALLKSRKP-------RVVVRRTNRYIIVQFIGFKGEGDEVIAYAFSKELEKYGWPYGGKNLPAAYLTGYLAAMR--------AKKAGVTE------------------AILDIGRFPSTKGSRLYAALKGVLDAGIDVPHSPE----ILPDEDRIRGE---------HIASFAEKL--EEEGSLERQFSDYLRRGADPKIISEAFESVLERISAMSN 194
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_IGNH4 (50S ribosomal protein L18P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl18p PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.734e-11 Identity = 57/203 (28.08%), Postives = 91/203 (44.83%), Query Frame = 3 Query: 66 KYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRAD 671 K RFVVR +NK + Q+I + GD V+A+A++ EL + YG + + A Y TG+L A R K G Y+V D+GL K T G RVF +P + D ++ E H+A+Y +L + PE+YQ F + ++RG++ ++ + +++V A I D Sbjct: 32 KPRFVVRKSNKYVWVQVIEFAPEGDKVIAAAHSKELEKKYGWKGYGNSLPAVYLTGMLAALRAKK--------------AGIQYAVP------------DIGLHKPTKGARVFAAIKAANDVGLEVPVGD-----VVPDESRIRGE---------HIASYAESLKNENPEEYQRRFAKLLERGLKPEDYPKHFEEVKAKILED 194
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_ARCFU (50S ribosomal protein L18P OS=Archaeoglobus fulgidus GN=rpl18p PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.734e-11 Identity = 62/209 (29.67%), Postives = 93/209 (44.50%), Query Frame = 3 Query: 3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNL 629 KT+YR R++L+ K R VVR TN+ + AQI+ + GD V+ + L +G + L N AAY TG+L+A++ L+ + GE A+LD+GL T G+RVF +PHS++ D ++ E H+AAY E PE+ F EY KRG++ +L Sbjct: 20 KTNYRKRLKLLLSRKP-------RLVVRITNRRVIAQIVEYAPEGDRVVVGVDSAMLREFGWKGDLNNTPAAYLTGILIAKKALQ------------KGIGE--------------AVLDIGLHTPTRGSRVFAVLRGAVEGGLEVPHSDE----VLPDDSRIRGE---------HIAAY----YEMNPER----FGEYEKRGLKPSDL 174
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_HALSA (50S ribosomal protein L18P OS=Halobacterium salinarium GN=rpl18p PE=1 SV=3) HSP 1 Score: 69.707 bits (169), Expect = 2.264e-11 Identity = 55/189 (29.10%), Postives = 81/189 (42.86%), Query Frame = 3 Query: 3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEP 569 +TDY R+RL+ K R V R +NK +TAQ+++ GD +ASA++ +L YG N AAY TGLL +R + D VE A+LD+GL T G++VF +PH++ A +S+ + H+A Y +L DEP Sbjct: 18 RTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSRTRGE-------------HIAEYAESL--DEP 158 The following BLAST results are available for this feature:
BLAST of CV885159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885159 ID=CV885159; Name=CV885159; organism=Citrus sinensis; type=EST; length=831bpback to top |