CV885159
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_HALS3 (50S ribosomal protein L18P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl18p PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.264e-11 Identity = 55/189 (29.10%), Postives = 81/189 (42.86%), Query Frame = 3 Query: 3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEP 569 +TDY R+RL+ K R V R +NK +TAQ+++ GD +ASA++ +L YG N AAY TGLL +R + D VE A+LD+GL T G++VF +PH++ A +S+ + H+A Y +L DEP Sbjct: 18 RTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSRTRGE-------------HIAEYAESL--DEP 158
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_THEPD (50S ribosomal protein L18P OS=Thermofilum pendens (strain Hrk 5) GN=rpl18p PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.862e-11 Identity = 59/220 (26.82%), Postives = 93/220 (42.27%), Query Frame = 3 Query: 3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAI 662 KT+Y R +LI K R VVR ++ QI A+ GD+V+ASA+++EL +YG + N A Y G L A++ LK +G E A++D+GL + +RVF IP + G + ++ E H+A Y + L E PE ++ F Y+ G++ ++L E + V I Sbjct: 18 KTNYYKRRKLIISGKP-------RLVVRVLSRTAIVQIAKATPKGDVVIASAHSNELKKYGWKGYRRNTPALYLLGFLAAKKALK--------QGVTE------------------AIVDIGLHRPVKASRVFAAVKGALDAGLKIPVGD----GVLPEDDRVRGE---------HIANYAKMLKESNPELFKLRFSGYLSAGLDPESLPEHFDSVKQKI 191
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_THESM (50S ribosomal protein L18P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl18p PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.044e-11 Identity = 63/221 (28.51%), Postives = 95/221 (42.99%), Query Frame = 3 Query: 3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAI 662 KT+Y R+ L+ K R VVR T AQI+ + GD + SA+ EL R +G + N +AY GLL+ K LE E A+LD+GL T G+ +F +PHSE+ + G + ++ K H+A Y + L ED+ E Y+ F Y+ +G+E + L E +++V A I Sbjct: 18 KTNYHKRLALLKSGKP-------RLVVRKTLNHHVAQIVLYAPEGDKTVVSAHTRELMRDFGWKGHGGNTPSAYLLGLLIG---YKALEKGIE-----------------------EAILDIGLHPPTKGSSIFAVLKGAVDAGLNVPHSEEIYPG--------EERINGK-----HIAEYAKMLKEDD-ENYKKQFGGYLVKGLEPEKLPEHFEEVKARI 191
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_NANEQ (50S ribosomal protein L18P OS=Nanoarchaeum equitans GN=rpl18p PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.044e-11 Identity = 59/220 (26.82%), Postives = 92/220 (41.82%), Query Frame = 3 Query: 3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAI 662 KT YR R++L+ K R VVR N +I AQ++ GD V+ + +++ L +YG + N +AY GL+ LK G+ E A+LD+G K+T GN ++ IPHSE + I H+A Y + L E+E E Y+ F Y+K G++ + L +++V I Sbjct: 18 KTVYRKRLKLLLSGKP-------RLVVRRFNSNILAQLVEYDPKGDRVIFTIHSNVLKKYGWKGHRGNLPSAYLVGLIAGYEALK--------RGYKE------------------AVLDIGRYKSTKGNALYAVLKGALDAGLNIPHSETILPSEDR-------------IRGEHIANYAKMLKENE-ELYKKQFSRYLKEGLDPEQLPNHFEEVKQKI 190
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_METS5 (50S ribosomal protein L18P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl18p PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 6.588e-11 Identity = 57/227 (25.11%), Postives = 92/227 (40.53%), Query Frame = 3 Query: 9 DYRARIRLINQDK-NKYNTPKY------RFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRA 668 +Y+ + R + K N Y Y R VVR TNK + Q + GDI +A+A++ EL ++G + N A Y TG L R K G A+ D+GL T G R+F +P D V+ + H+A Y + L +++P+KY+ F Y+ RG++ +L +K+V +I++ Sbjct: 6 NYKVKYRRRREGKTNYYRRYTYVLNRSDRVVVRLTNKYVIVQFVKFDPKGDITVAAAHSRELMKFGWKGDENNSTACYLTGYLAGLRAKKA--------GMTSASA------------------DLGLFTPTKGARIFYVLKGVIDSGVKVPMG--------------DVGVNNDRLAGKHIAEYAKKLEQEDPDKYRGLFSRYLARGLDPKDLPAHFKEVLNSIKS 192 The following BLAST results are available for this feature:
BLAST of CV885159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CV885159 ID=CV885159; Name=CV885159; organism=Citrus sinensis; type=EST; length=831bpback to top |