CV885159

Overview
NameCV885159
Unique NameCV885159
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9646 contig Csv1_Contig9646:147..977. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_HALS3 (50S ribosomal protein L18P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.264e-11
Identity = 55/189 (29.10%), Postives = 81/189 (42.86%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEP 569
            +TDY  R+RL+   K        R V R +NK +TAQ+++    GD  +ASA++ +L  YG      N  AAY TGLL  +R +                  D  VE         A+LD+GL   T G++VF            +PH++   A +S+   +             H+A Y  +L  DEP
Sbjct:   18 RTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSRTRGE-------------HIAEYAESL--DEP 158          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_THEPD (50S ribosomal protein L18P OS=Thermofilum pendens (strain Hrk 5) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.862e-11
Identity = 59/220 (26.82%), Postives = 93/220 (42.27%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAI 662
            KT+Y  R +LI   K        R VVR  ++    QI  A+  GD+V+ASA+++EL +YG +    N  A Y  G L A++ LK        +G  E                  A++D+GL +    +RVF            IP  +    G   +  ++  E         H+A Y + L E  PE ++  F  Y+  G++ ++L E +  V   I
Sbjct:   18 KTNYYKRRKLIISGKP-------RLVVRVLSRTAIVQIAKATPKGDVVIASAHSNELKKYGWKGYRRNTPALYLLGFLAAKKALK--------QGVTE------------------AIVDIGLHRPVKASRVFAAVKGALDAGLKIPVGD----GVLPEDDRVRGE---------HIANYAKMLKESNPELFKLRFSGYLSAGLDPESLPEHFDSVKQKI 191          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_THESM (50S ribosomal protein L18P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.044e-11
Identity = 63/221 (28.51%), Postives = 95/221 (42.99%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAI 662
            KT+Y  R+ L+   K        R VVR T     AQI+  +  GD  + SA+  EL R +G +    N  +AY  GLL+     K LE   E                        A+LD+GL   T G+ +F            +PHSE+ + G        +  ++ K     H+A Y + L ED+ E Y+  F  Y+ +G+E + L E +++V A I
Sbjct:   18 KTNYHKRLALLKSGKP-------RLVVRKTLNHHVAQIVLYAPEGDKTVVSAHTRELMRDFGWKGHGGNTPSAYLLGLLIG---YKALEKGIE-----------------------EAILDIGLHPPTKGSSIFAVLKGAVDAGLNVPHSEEIYPG--------EERINGK-----HIAEYAKMLKEDD-ENYKKQFGGYLVKGLEPEKLPEHFEEVKARI 191          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_NANEQ (50S ribosomal protein L18P OS=Nanoarchaeum equitans GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.044e-11
Identity = 59/220 (26.82%), Postives = 92/220 (41.82%), Query Frame = 3
Query:    3 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAI 662
            KT YR R++L+   K        R VVR  N +I AQ++     GD V+ + +++ L +YG +    N  +AY  GL+     LK         G+ E                  A+LD+G  K+T GN ++            IPHSE       +             I   H+A Y + L E+E E Y+  F  Y+K G++ + L   +++V   I
Sbjct:   18 KTVYRKRLKLLLSGKP-------RLVVRRFNSNILAQLVEYDPKGDRVIFTIHSNVLKKYGWKGHRGNLPSAYLVGLIAGYEALK--------RGYKE------------------AVLDIGRYKSTKGNALYAVLKGALDAGLNIPHSETILPSEDR-------------IRGEHIANYAKMLKENE-ELYKKQFSRYLKEGLDPEQLPNHFEEVKQKI 190          
BLAST of CV885159 vs. ExPASy Swiss-Prot
Match: RL18_METS5 (50S ribosomal protein L18P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.588e-11
Identity = 57/227 (25.11%), Postives = 92/227 (40.53%), Query Frame = 3
Query:    9 DYRARIRLINQDK-NKYNTPKY------RFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRA 668
            +Y+ + R   + K N Y    Y      R VVR TNK +  Q +     GDI +A+A++ EL ++G +    N  A Y TG L   R  K         G   A+                   D+GL   T G R+F            +P                D  V+   +   H+A Y + L +++P+KY+  F  Y+ RG++  +L   +K+V  +I++
Sbjct:    6 NYKVKYRRRREGKTNYYRRYTYVLNRSDRVVVRLTNKYVIVQFVKFDPKGDITVAAAHSRELMKFGWKGDENNSTACYLTGYLAGLRAKKA--------GMTSASA------------------DLGLFTPTKGARIFYVLKGVIDSGVKVPMG--------------DVGVNNDRLAGKHIAEYAKKLEQEDPDKYRGLFSRYLARGLDPKDLPAHFKEVLNSIKS 192          
The following BLAST results are available for this feature:
BLAST of CV885159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
RL18_HALS32.264e-1129.1050S ribosomal protein L18P OS=Halobacterium salina... [more]
RL18_THEPD3.862e-1126.8250S ribosomal protein L18P OS=Thermofilum pendens ... [more]
RL18_THESM5.044e-1128.5150S ribosomal protein L18P OS=Thermococcus sibiric... [more]
RL18_NANEQ5.044e-1126.8250S ribosomal protein L18P OS=Nanoarchaeum equitan... [more]
RL18_METS56.588e-1125.1150S ribosomal protein L18P OS=Metallosphaera sedul... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885159 ID=CV885159; Name=CV885159; organism=Citrus sinensis; type=EST; length=831bp
GAAAGACTGACTATCGGGCTAGGATTCGCCTGATCAACCAAGATAAAAAC
AAGTACAACACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAACAAAGA
TATCACTGCACAAATTATATCTGCCAGCATAGCCGGGGATATAGTCCTTG
CATCTGCTTATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTGGGCCTC
ACTAATTATGCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCGCCGAGT
CCTGAAAATGCTTGAGATGGATGCTGAGTATGAGGGGCACGTTGAGGCAA
CAGGAGAGGACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCTTTCCGT
GCCCTGCTTGATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTCTT
TGGCGCTCTTAAGGGTGCATTGGATGGTGGACTTGATATCCCTCACAGTG
AGAAGAGATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGACGCTGAA
GTTCACCGTAAATACATCTATTGTGGTCATGTCGCTGCCTACATGAGGAC
TTTGATGGAAGATGAGCCAGAGAAGTACCAGTCTCACTTTTGTGAATACA
TCAAGAGAGGTATTGAGGCTGATAACCTTGAAGAGTTGTACAAGAAGGTA
CATGCTGCCATCCGTGCAGACCCTAACCAGAAGAAATCTGAGAAGAAGCC
TCCAGCAGAGCACAAGAGGTACAACCTGAAGAAACTGACGTACGAGGAAA
GGAAAGCCAGGTTAGTTGAAAGGTTGAAAGCACTCAATGCTGCTGAAGAC
GATGAAGCCGATGAGTGAATGCGATACTAGG
back to top