CV885158

Overview
NameCV885158
Unique NameCV885158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length943
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_XANCP (Undecaprenyl pyrophosphate synthetase OS=Xanthomonas campestris pv. campestris GN=uppS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.704e-16
Identity = 61/207 (29.47%), Postives = 94/207 (45.41%), Query Frame = -1
Query:  308 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPE 928
            GHRAG   +   + +C++  V  ++++AFS +N+ R Q+E+                E   L + GV+V FIG+    + P+R       R T+ NTR+V+ I  +Y   ++I        +     + Q            E  DE     +  + L DL         P PD+ IRT G+ R+SNFLLWQ +   L+  E LWPE
Sbjct:   40 GHRAGARAVNRTIDFCLDKGVSALTLFAFSSENWGRPQDEVDALMKLFLHALDRGVEE---LQRRGVQVRFIGDRSRFTAPLRDRMAGAERITAANTRLVLSIAASYGGRQDIAMAARALAVEVAAGRLQP-----------EQIDEALLASR--VALADL---------PAPDLFIRTGGDTRISNFLLWQLAYTELWFTETLWPE 221          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_COXBU (Undecaprenyl pyrophosphate synthetase OS=Coxiella burnetii GN=uppS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.838e-16
Identity = 61/211 (28.91%), Postives = 101/211 (47.87%), Query Frame = -1
Query:  308 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLE---KHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPE 931
            AGHRAG   +  +++Y  E  ++ ++++AFSI+N  R Q+E+ +              E   L K  V++  IG+     + +    +     T  NT + ++I L YS   +I+  V+                          A++ KN+E  T +L+  E    ++ +   P+PD+LIRTSGE RLSNF+LWQ +   +Y   ALWP+
Sbjct:   26 AGHRAGAKVVRRIVEYAAEKPLEVLTLFAFSIENRARPQSEVNFLMSLFLDSLKKNTEE---LHKNNVQLRVIGDHREFDKKMLAQIQTSQDLTKHNTGLKLIIALNYSGRWDILQAVQRM------------------------AEKIKNQEL-TSELMSAELFQNYLCLSDLPEPDLLIRTSGEQRLSNFMLWQFAYTEIYFTPALWPD 208          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: DDPS4_ARATH (Dehydrodolichyl diphosphate synthase 4 OS=Arabidopsis thaliana GN=At5g58782 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.838e-16
Identity = 59/222 (26.58%), Postives = 98/222 (44.14%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            G+ AG   L+     C +L +  VS +AFS +N+ R + E++                  F     +RV  IGNL  + E +     ++  AT    +  +++ + YS   +I+   +    + KK++    +         ED DE          L + E       +P PD+LIRTSGE R+SNF LWQ +    +    LWP+   +  I A++++QR
Sbjct:   82 GYEAGAKRLLEFADLCFKLGINTVSAFAFSTENWGRHKIEVKCLMYLFQRYLKSKIQ---FFQSKEIRVSVIGNLAKIPESLLRTVHELEEATKSYKKKHLILAIDYSGRFDILGACKN---IVKKSEQGLIRE--------EDVDE---------TLFERELQTRCTEFPSPDLLIRTSGEQRISNFFLWQLAYTEFFFSPVLWPDFDKQKFIEALVSYQR 280          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_LISIN (Undecaprenyl pyrophosphate synthetase OS=Listeria innocua GN=uppS PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.252e-16
Identity = 64/225 (28.44%), Postives = 97/225 (43.11%), Query Frame = -1
Query:  266 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGF---LSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 931
            AGH+ G   +  + +Y   + +  +++YAFS +N+KR  +E+ +               D F   L +  VRV  +G    + E    A EK +  T+  T + +   L Y    EI+   +E                     + E   E K  E  T +L  L  H+      DPD+LIRTSGE RLSNF+LWQ +    Y  E  WP+      + AI+ +Q
Sbjct:   47 AGHKEGMDVVKRVTRYANAIGIDVLTLYAFSTENWKRPTDEVDFLMKLPVEFF------DSFVPELIEENVRVNVMGYRENLPEHTMRAVEKAIADTAHCTGLTLNFALNYGGRSEIITAAKEA--------------------MKELVSEGKTSEDLTEEL--LNDHLMSHGLGDPDLLIRTSGELRLSNFMLWQLAYSEFYFTETHWPDFSKEDFLQAIIEYQ 243          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_LACJO (Undecaprenyl pyrophosphate synthetase OS=Lactobacillus johnsonii GN=uppS PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.252e-16
Identity = 63/221 (28.51%), Postives = 100/221 (45.25%), Query Frame = -1
Query:  266 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 928
            GHR G   + ++     +L +K +++YAFS +N+ R  +E+ Y              E   L +  VRV  +G +  + E   +  +K M  T+ NT +V+     Y S  EI   V+E           A K +  + D+ + +++  +    T  L           Y DPD+LIRTSGE RLSNFLLWQ +       + LWP+     L   + ++Q
Sbjct:   32 GHRHGMDNIRNIALAANKLGIKVLTLYAFSTENWARPTDEVNYLMRLPIDFFDKFMPE---LMENNVRVNIMGFVDELPEKTYLVTQKAMAETANNTGMVLNFAFNYGSRREITAGVQEI----------ARKVKVGEIDIDDISEKMVSDHLLTHSLAP---------YEDPDLLIRTSGEERLSNFLLWQMAYTEFSFSDKLWPDFDKTDLEELVKDYQ 230          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS2_CORGL (Undecaprenyl pyrophosphate synthetase 2 OS=Corynebacterium glutamicum GN=uppS2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.252e-16
Identity = 57/224 (25.45%), Postives = 98/224 (43.75%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTK--KTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GH+ G   L+ ++  C+EL V Y+S YAFS +N++R+ +E+R+              +   L + GVRV ++G    +   +    E     T  NT + + +C+ Y    EI+    +   +    K +P+    +   N + E                           PD D+ +R SGE R SNFLLWQS+   +   + L+P+   + L  A+L + +
Sbjct:   39 GHKRGEAVLLDVVDACIELGVPYLSAYAFSTENWRRSTDEVRFLMGFNRDVLRRQRDD---LHEKGVRVRWVGRRPRLWRSVIRELETAEELTKDNTTMTLAMCVNYGGRAEIIDAARDIARLAAEGKLRPEQITEKTFPNFLDEPD------------------------MPDVDLFLRPSGEKRTSNFLLWQSAYAEMVYQDKLFPDFTQQDLYDAVLEYAK 235          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_VIBCH (Undecaprenyl pyrophosphate synthetase OS=Vibrio cholerae GN=uppS PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.078e-15
Identity = 60/220 (27.27%), Postives = 98/220 (44.55%), Query Frame = -1
Query:  269 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNF 928
            GH+ G   +   +     L +K V+++AFS +N++R + E+                +   L K  +R+  IG+    SE ++    +  + T+ NT +V+ I   Y    +I+   +   L  K TQ +        +D+ ED                 ++H+ M   PD D+LIRTSGE R+SNF+LWQ +   +Y     WPE     LI A+  F
Sbjct:   36 GHKNGVAAVRKTISTSARLGIKAVTLFAFSSENWRRPEEEVGVLMELFMTVLSTEIKK---LHKNNLRLRVIGDKSRFSERLQTKIAQAEQLTASNTGMVVNIAANYGGQWDILQATQ--ALAEKVTQGEL-----QPSDIDEDV---------------FKQHLTMADLPDVDLLIRTSGECRISNFMLWQLAYAEMYFTPVFWPEFDENCLIEAVTWF 230          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_XYLFT (Undecaprenyl pyrophosphate synthetase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=uppS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.408e-15
Identity = 55/207 (26.57%), Postives = 91/207 (43.96%), Query Frame = -1
Query:  308 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPE 928
            GHRAG    M  + +C+E  +K ++++AFS +N+ R  +E+ +              E   L + GV+V FIG        +     K    T+ N R+++ + ++Y   ++I         + +       KP     D+                   L +HM +   P PD+ IRTSG  R+SNFLLWQ +   L+  + +WPE
Sbjct:   37 GHRAGVKAAMRTVDFCLEKGIKMLTLFAFSSENWNRPADEVNFLMEMSIKLFGRGIEE---LHRRGVQVRFIGERKRFDIALVEHMTKAEHLTASNQRLILSLAVSYGGRQDITMAARA---LAQDVAAGRLKPEQIDEDL-------------------LGQHMALADLPPPDMFIRTSGVIRISNFLLWQIAYTELWFTDVMWPE 218          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_XYLFA (Undecaprenyl pyrophosphate synthetase OS=Xylella fastidiosa GN=uppS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.408e-15
Identity = 55/207 (26.57%), Postives = 91/207 (43.96%), Query Frame = -1
Query:  308 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPE 928
            GHRAG    M  + +C+E  +K ++++AFS +N+ R  +E+ +              E   L + GV+V FIG        +     K    T+ N R+++ + ++Y   ++I         + +       KP     D+                   L +HM +   P PD+ IRTSG  R+SNFLLWQ +   L+  + +WPE
Sbjct:   37 GHRAGVKAAMRTVDFCLEKGIKMLTLFAFSSENWNRPADEVNFLMEMSIKLFGRGIEE---LHRRGVQVRFIGERKRFDIALVEHMTKAEHLTANNQRLILSLAVSYGGRQDITMAARA---LAQDVAAGRLKPEQIDEDL-------------------LGQHMALADLPPPDMFIRTSGVIRISNFLLWQIAYTELWFTDVMWPE 218          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_CHLCV (Undecaprenyl pyrophosphate synthetase OS=Chlamydophila caviae GN=uppS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.408e-15
Identity = 58/222 (26.13%), Postives = 103/222 (46.40%), Query Frame = -1
Query:  266 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 931
            +GH  G   L S+++    L ++ ++++AFS +NF R+  E+                   +L +  +R+  IGNL  +   ++    ++   T +N+   +++ + Y   +E+V               +AFK  +   D+ E      +  +  I+L     ++     PDPD+LIRT GE R+SNFLLWQ +   LY  + LWP+    H + AI  +Q
Sbjct:   46 SGHYYGAKALPSIIESAFSLGIEVLTLFAFSTENFLRSTEEVEELFSLFHSQLDEQFP---YLIENKIRLRCIGNLSALPLQLQQKISEISLKTHQNSHRDLVLAINYGGKDELV---------------RAFKKLH--QDLVEQKISSDSISEELIRL-----YLDTSEMPDPDLLIRTGGEMRVSNFLLWQIAYTELYVTDILWPDFKPNHFLDAIKAYQ 242          
The following BLAST results are available for this feature:
BLAST of CV885158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
UPPS_XANCP3.704e-1629.47Undecaprenyl pyrophosphate synthetase OS=Xanthomon... [more]
UPPS_COXBU4.838e-1628.91Undecaprenyl pyrophosphate synthetase OS=Coxiella ... [more]
DDPS4_ARATH4.838e-1626.58Dehydrodolichyl diphosphate synthase 4 OS=Arabidop... [more]
UPPS_LISIN8.252e-1628.44Undecaprenyl pyrophosphate synthetase OS=Listeria ... [more]
UPPS_LACJO8.252e-1628.51Undecaprenyl pyrophosphate synthetase OS=Lactobaci... [more]
UPPS2_CORGL8.252e-1625.45Undecaprenyl pyrophosphate synthetase 2 OS=Coryneb... [more]
UPPS_VIBCH1.078e-1527.27Undecaprenyl pyrophosphate synthetase OS=Vibrio ch... [more]
UPPS_XYLFT1.408e-1526.57Undecaprenyl pyrophosphate synthetase OS=Xylella f... [more]
UPPS_XYLFA1.408e-1526.57Undecaprenyl pyrophosphate synthetase OS=Xylella f... [more]
UPPS_CHLCV1.408e-1526.13Undecaprenyl pyrophosphate synthetase OS=Chlamydop... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885158 ID=CV885158; Name=CV885158; organism=Citrus sinensis; type=EST; length=943bp
GTAATACATTCCATATGGTTTTATTTTGAAAAGTCACCTTTCATGGGGTT
TGTGGTAGCATATTATCCCATTAAGAATCTAACCGACCACGCAAACATAA
AGGACAGCATTTGCAGATGCTTATCTGTTTGAGCTTCCACCAAAACTCAC
CATGATGTGAACCTAGGAGCAGAAATCACACGATGTTGTTCAGATAGTAT
ATGGTTCTAGGGGGCAAAGGATACTAGAGCTGCTTCTTCTTCTTTTCCAA
ATAGGCGTGGTGTCGTTGAAAGTTCAAGATAGCCCAGATCAAGTGCCGCA
AACCAATTTCTGGCCACAGTGCTTCTGGGGCATACAACATGCAGTTGCTG
CTCTGCCAAAGAAGGAAATTGCTCAGGCGGTTCTCGCCAGAAGTTCGGAT
GAGGATGTCAGGATCTGGATATACACCCATGTACATATGCTTCTCAAGAT
CTACAAGCTTAATAGTATTTTTCTCCTTATTTTTATGCTCATCAGCATCT
TCAGTAACATCATTTTGAGGATTACGTGGCTTAAATGCTTGGGGCTGGGT
TTTCTTTGTAACGAGGCAGGTTTCTTCAACAGTATGGACGATCTCCTCAG
TGGAACTATATGCCAGGCAGATTAGAATCACGATCCTGGTGTTTTTGGAA
GTAGCTCTCATCACTTTTTCAGCTGCAACCCTAATAGGCTCACTCACTAG
TCCTAAGTTGCCTATGAAACATACTCTGACACCATATTTACTAAGAAAAC
CATCTTCCCGAAGCAGCAACTCCATCTTTTCCAACATTAGATCCATCAAA
TATCGAATCTCGTTTTGCGTTCGTTTGAAATTATCTATACTGAAGGCGTA
GATAGAGACATACTTCACACTCAATTCGACGCAGTACTTCAACAGGGACA
TGAGGGTCAAAAATCCAGCCCTGTGACCAGCCCCCTCTCCTGC
back to top