CV885158

Overview
NameCV885158
Unique NameCV885158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length943
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_AQUAE (Undecaprenyl pyrophosphate synthetase OS=Aquifex aeolicus GN=uppS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.408e-15
Identity = 58/223 (26.01%), Postives = 101/223 (45.29%), Query Frame = -1
Query:  263 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 931
            AGH  G      +++YC+EL +K+++++AFS +N+ R + E++               +   L   GVRV  IG    +S  +    E++   +     + + + + Y   ++I+  V++   V    QP                   K  E+   + +DL         PDPD+LIRT+GE R+SNFLLW  +   LY  + LWP+      + A+ ++ R
Sbjct:   29 AGHYRGAEVAEDIIEYCIELGIKHLTLFAFSTENWNRPKEEVKALFELMENYIRSKREK---LYSLGVRVRLIGRRDRLSRGLVNLMEELESDSKDFKNLFLNVAIDYGGRDDILRAVKKIMEV----QPS------------------KLDEETFSQFLDLS------CSPDPDLLIRTAGEKRISNFLLWNLAYTELYFTDTLWPDFTREEFMKALEDYSR 220          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_STAES (Undecaprenyl pyrophosphate synthetase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=uppS PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.838e-15
Identity = 55/213 (25.82%), Postives = 97/213 (45.54%), Query Frame = -1
Query:  290 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHL 928
            GH  G  T+  + +   ++ +KY+++YAFS +N+ R ++E+ Y              E   L +  V++  IG    + +    A +     T  NT + ++  + Y    EI+ ++        K      +     ++V ++A               +++H+    YPDPD+LIRTSGE R+SNFL+WQ+S       E LWP+   + L
Sbjct:   49 GHYEGMQTIKKITREASDIGIKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPE---LIEKNVKIETIGFYEGLPQSTIDAIDFAKAKTQHNTGLTLVFAINYGGRAEIIQSM--------KAIYNELQLNGQGSEVIDEA--------------LIKRHLMTHSYPDPDLLIRTSGEQRISNFLIWQASYSEFIFNEKLWPDFDEKEL 236          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_STAEQ (Undecaprenyl pyrophosphate synthetase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=uppS PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.838e-15
Identity = 55/213 (25.82%), Postives = 97/213 (45.54%), Query Frame = -1
Query:  290 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHL 928
            GH  G  T+  + +   ++ +KY+++YAFS +N+ R ++E+ Y              E   L +  V++  IG    + +    A +     T  NT + ++  + Y    EI+ ++        K      +     ++V ++A               +++H+    YPDPD+LIRTSGE R+SNFL+WQ+S       E LWP+   + L
Sbjct:   49 GHYEGMQTIKKITREASDIGIKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPE---LIEKNVKIETIGFYEGLPQSTIDAIDFAKAKTQHNTGLTLVFAINYGGRAEIIQSM--------KAIYNELQLNGQGSEVIDEA--------------LIKRHLMTHSYPDPDLLIRTSGEQRISNFLIWQASYSEFIFNEKLWPDFDEKEL 236          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_PROMA (Undecaprenyl pyrophosphate synthetase OS=Prochlorococcus marinus GN=uppS PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.838e-15
Identity = 59/222 (26.58%), Postives = 94/222 (42.34%), Query Frame = -1
Query:  266 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTED-ADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 928
            GH AG   L   L+ C +  +  +++YAFS +N+ R + E+ +                  L+   V++ F+G+L  +   ++    +    TS N  I   +C  Y    E+V               Q    R  Q D+     DEH                +    Y DPD+LIRTSGE R+SNFLLWQ +   ++  + LWP+     L  A++++Q
Sbjct:   52 GHSAGVDALKQTLRLCNDWGIGVLTVYAFSTENWSRPKEEVNFLMTLFERVLKKELEA---LNLEEVQISFLGDLDQLPTRLQDLINEATELTSGNNGIRFNVCTNYGGRRELVLAA------------QKLAQRVLQGDLDPSFIDEHT-----------FAGELLTSSYADPDLLIRTSGEMRISNFLLWQLAYAEIHVTDTLWPDFDSISLTKALIDYQ 247          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_LISMO (Undecaprenyl pyrophosphate synthetase OS=Listeria monocytogenes GN=uppS PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.838e-15
Identity = 61/225 (27.11%), Postives = 96/225 (42.67%), Query Frame = -1
Query:  266 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGF---LSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 931
            AGH+ G   +  + +Y   + +  +++YAFS +N+KR  +E+ +               D F   L +  VRV  +G    + +    A EK +  T+  T + +   L Y    EI+   +E           A K    +    +D  E K           L  H+      DPD+LIRTSGE RLSNF+LWQ +    Y  +  WP+      + AI+ +Q
Sbjct:   47 AGHKEGMDVVKRVTRYANAIGIDVLTLYAFSTENWKRPTDEVDFLMKLPVEFF------DSFVPELIEENVRVNVMGYRENLPDHTMRAVEKAIADTAHCTGLTLNFALNYGGRSEIITAAKE-----------AMKELELEGKSADDLTEEK-----------LNDHLMSSGLGDPDLLIRTSGELRLSNFMLWQLAYSEFYFTDTHWPDFSKEDFLQAIIEYQ 243          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPSS_MYCBO (Undecaprenyl pyrophosphate synthetase OS=Mycobacterium bovis GN=uppS PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.401e-15
Identity = 59/216 (27.31%), Postives = 93/216 (43.06%), Query Frame = -1
Query:  281 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWA 928
            GH+ G   ++ +    +EL +K++S+YAFS +N+KR+  E+R+                  L K GVR+ ++G+   +   +          T  N  I I  C+ Y    EI     E        +  A    NP+  +TE                 + +H+     PD D+ +RTSGE R SNF+LWQ++       + LWP+   R L WA
Sbjct:   92 GHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDT---LKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIA------REVAAGRLNPER-ITEST---------------IARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDL-WA 281          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_MYCTU (Undecaprenyl pyrophosphate synthetase OS=Mycobacterium tuberculosis GN=uppS PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.401e-15
Identity = 59/216 (27.31%), Postives = 93/216 (43.06%), Query Frame = -1
Query:  281 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWA 928
            GH+ G   ++ +    +EL +K++S+YAFS +N+KR+  E+R+                  L K GVR+ ++G+   +   +          T  N  I I  C+ Y    EI     E        +  A    NP+  +TE                 + +H+     PD D+ +RTSGE R SNF+LWQ++       + LWP+   R L WA
Sbjct:   92 GHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDT---LKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIA------REVAAGRLNPER-ITEST---------------IARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDL-WA 281          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS2_CORDI (Undecaprenyl pyrophosphate synthetase 2 OS=Corynebacterium diphtheriae GN=uppS2 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.401e-15
Identity = 56/217 (25.81%), Postives = 96/217 (44.24%), Query Frame = -1
Query:  278 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAI 928
            GH+ G   L+ ++  C+ + + Y+S YAFS +N++R+ +E+R+                  L+  GVRV ++G    +   +    E     T  NT + + +C+ Y    EIV    E   + +++     +P     ++TED+      E +                PD D+ +R SGE R SNFLLWQS+   +     L+P+     L  A+
Sbjct:   40 GHKRGEAVLLDMVDACIAMGIPYLSAYAFSTENWRRSTDEVRFLMGFNRDVLRRQRDA---LNAKGVRVRWVGRRPRLWRSVIRELEAAEELTKDNTTMTLAMCVNYGGRAEIVDAARE---IARRSAVGTLRP----EEITEDSFTQFLDEPD---------------MPDVDLFLRPSGEKRTSNFLLWQSAYAEMVYQNKLFPDYTPEDLFAAV 231          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS2_BRAJA (Undecaprenyl pyrophosphate synthetase 2 OS=Bradyrhizobium japonicum GN=uppS2 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.401e-15
Identity = 61/222 (27.48%), Postives = 95/222 (42.79%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GHR G   L  +++   EL ++Y++I++FS +N+ R  +EI                    L + GV+V  IG    +   I     +    T  N+R+ +++   Y S +EI    ++                    +V E       ++  TI    L  H+     PDPD++IRTSGE RLSNFL+WQ++   L      WP+     L  AI  F R
Sbjct:   42 GHRRGVEALRRVVRASHELGIRYLTIFSFSSENWSRPASEIGDLFGLLRRFIRNDLAS---LHRDGVKVRIIGERDGLESDICALLNEAEELTRDNSRLTLVVAFNYGSRQEIAKAAQKLA-----------------REVAEG-----RRDPATIDAETLGAHLDAPDIPDPDLIIRTSGEQRLSNFLMWQAAYSELVFVPIHWPDFDKAALEGAIAEFAR 238          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_LISMF (Undecaprenyl pyrophosphate synthetase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=uppS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.136e-15
Identity = 61/225 (27.11%), Postives = 95/225 (42.22%), Query Frame = -1
Query:  266 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGF---LSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 931
            AGH+ G   +  + +Y   + +  +++YAFS +N+KR  +E+ +               D F   L +  VRV  +G    +      A EK +  T+  T + +   L Y    EI+   +E           A K    +    +D  E K           L  H+      DPD+LIRTSGE RLSNF+LWQ +    Y  +  WP+      + AI+ +Q
Sbjct:   47 AGHKEGMDVVKRVTRYANAIGIDVLTLYAFSTENWKRPTDEVDFLMKLPVEFF------DSFVPELIEENVRVNVMGYRENLPNHTMRAVEKAIADTAHCTGLTLNFALNYGGRSEIITAAKE-----------AMKELELEGKSADDLTEEK-----------LNDHLMSSGLGDPDLLIRTSGELRLSNFMLWQLAYSEFYFTDTHWPDFSKEDFLQAIIEYQ 243          
The following BLAST results are available for this feature:
BLAST of CV885158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
UPPS_AQUAE1.408e-1526.01Undecaprenyl pyrophosphate synthetase OS=Aquifex a... [more]
UPPS_STAES1.838e-1525.82Undecaprenyl pyrophosphate synthetase OS=Staphyloc... [more]
UPPS_STAEQ1.838e-1525.82Undecaprenyl pyrophosphate synthetase OS=Staphyloc... [more]
UPPS_PROMA1.838e-1526.58Undecaprenyl pyrophosphate synthetase OS=Prochloro... [more]
UPPS_LISMO1.838e-1527.11Undecaprenyl pyrophosphate synthetase OS=Listeria ... [more]
UPSS_MYCBO2.401e-1527.31Undecaprenyl pyrophosphate synthetase OS=Mycobacte... [more]
UPPS_MYCTU2.401e-1527.31Undecaprenyl pyrophosphate synthetase OS=Mycobacte... [more]
UPPS2_CORDI2.401e-1525.81Undecaprenyl pyrophosphate synthetase 2 OS=Coryneb... [more]
UPPS2_BRAJA2.401e-1527.48Undecaprenyl pyrophosphate synthetase 2 OS=Bradyrh... [more]
UPPS_LISMF3.136e-1527.11Undecaprenyl pyrophosphate synthetase OS=Listeria ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885158 ID=CV885158; Name=CV885158; organism=Citrus sinensis; type=EST; length=943bp
GTAATACATTCCATATGGTTTTATTTTGAAAAGTCACCTTTCATGGGGTT
TGTGGTAGCATATTATCCCATTAAGAATCTAACCGACCACGCAAACATAA
AGGACAGCATTTGCAGATGCTTATCTGTTTGAGCTTCCACCAAAACTCAC
CATGATGTGAACCTAGGAGCAGAAATCACACGATGTTGTTCAGATAGTAT
ATGGTTCTAGGGGGCAAAGGATACTAGAGCTGCTTCTTCTTCTTTTCCAA
ATAGGCGTGGTGTCGTTGAAAGTTCAAGATAGCCCAGATCAAGTGCCGCA
AACCAATTTCTGGCCACAGTGCTTCTGGGGCATACAACATGCAGTTGCTG
CTCTGCCAAAGAAGGAAATTGCTCAGGCGGTTCTCGCCAGAAGTTCGGAT
GAGGATGTCAGGATCTGGATATACACCCATGTACATATGCTTCTCAAGAT
CTACAAGCTTAATAGTATTTTTCTCCTTATTTTTATGCTCATCAGCATCT
TCAGTAACATCATTTTGAGGATTACGTGGCTTAAATGCTTGGGGCTGGGT
TTTCTTTGTAACGAGGCAGGTTTCTTCAACAGTATGGACGATCTCCTCAG
TGGAACTATATGCCAGGCAGATTAGAATCACGATCCTGGTGTTTTTGGAA
GTAGCTCTCATCACTTTTTCAGCTGCAACCCTAATAGGCTCACTCACTAG
TCCTAAGTTGCCTATGAAACATACTCTGACACCATATTTACTAAGAAAAC
CATCTTCCCGAAGCAGCAACTCCATCTTTTCCAACATTAGATCCATCAAA
TATCGAATCTCGTTTTGCGTTCGTTTGAAATTATCTATACTGAAGGCGTA
GATAGAGACATACTTCACACTCAATTCGACGCAGTACTTCAACAGGGACA
TGAGGGTCAAAAATCCAGCCCTGTGACCAGCCCCCTCTCCTGC
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