CV885158

Overview
NameCV885158
Unique NameCV885158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length943
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS1_COREF (Undecaprenyl pyrophosphate synthetase 1 OS=Corynebacterium efficiens GN=uppS1 PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 3.136e-15
Identity = 56/209 (26.79%), Postives = 93/209 (44.50%), Query Frame = -1
Query:  311 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVD---LEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWP 928
            GHR G   +  L+++C ++ V  V++Y  S +N  R + E++                   L +   RV  +G+L L+ +         +  T  +T + + I + Y   +EIV  V +                     +T   DE K  ++  I+ VD   +  H+Y    PDPD++IRTSGE RLS F+LWQS+   ++  +  WP
Sbjct:   51 GHRVGAKKIGELVRWCDDVDVDLVTVYLLSTENLGRDEAELQLLYDIIGDVVAELS-----LPETNCRVRLVGHLDLLPKEFAERLRGTVCETVDHTGVAVNIAVGYGGRQEIVDAVRDL--------------------LTSARDEGKTLDE-VIESVDAQAISTHLYTSGQPDPDLVIRTSGEQRLSGFMLWQSAYSEIWFTDTYWP 233          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_HELHP (Undecaprenyl pyrophosphate synthetase OS=Helicobacter hepaticus GN=uppS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.349e-15
Identity = 55/213 (25.82%), Postives = 95/213 (44.60%), Query Frame = -1
Query:  290 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHL 928
            GH+ G   +  + ++C E  + Y+++YAFS +N+KR + E+ +                    K  +R   IG++ + +  ++ A  ++  AT  +T++  ++ L Y S +EI  T  +              P    +  ++D     N   +T  L            PD D+LIRT GE R+SNF+LWQ+S   L+    L+P  G   L
Sbjct:   30 GHKEGAKIVRDITQWCAEKGIPYLTLYAFSTENWKRPKIEVDFLMKLLEKYLHDEKPV---YMKNHIRFRVIGDISVFNTRLKNAILELEHATQNHTKLTQILALNYGSRDEIARTFIKLA--------HTLTPHTLASLSSQDIISMINANLDTATL------------PDVDMLIRTGGEKRISNFMLWQASYAELFFTPTLFPSFGKNEL 219          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_CHLPN (Undecaprenyl pyrophosphate synthetase OS=Chlamydia pneumoniae GN=uppS PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.986e-15
Identity = 57/223 (25.56%), Postives = 101/223 (45.29%), Query Frame = -1
Query:  263 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 931
            +GH  G   L ++L   ++L +K +++Y FS +NF R + EI+                  +L +  + +  IG+L  + + I+     V R T+  +R+ +++ + Y   +E+V          KK        +   +D++E                 +  ++      DPD+LIRT GE R+SNFLLWQ +   LY  + LWP+   + L  AI  +Q+
Sbjct:   46 SGHYYGAKVLPNILNAVLDLGIKVLTLYTFSTENFGRPKEEIQEIFNIFYTQLDKQLP---YLMENEICLRCIGDLSKLPKGIQTKINHVSRMTASFSRLELVLAVNYGGKDELVRAF-------KKLHVDILNKKISSDDLSESL---------------ISSYLDTSGLTDPDLLIRTGGEMRVSNFLLWQIAYTELYITDTLWPDFTPQDLFEAINVYQQ 243          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_SULAC (Undecaprenyl pyrophosphate synthetase OS=Sulfolobus acidocaldarius GN=uppS PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.556e-14
Identity = 59/223 (26.46%), Postives = 102/223 (45.74%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNF-KRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            G+  G++ L  +L + +E+ +  V+++A S +N  KRTQ E+                 D  + KY VRV  IG L  + E ++     +   T K  +  +++ + Y   +EI+  +                 R   ND      + K+ +++T +     K++Y     D D+LIR+SGE R+SNFLLW  +   L+  +  WP+     L  AI +FQ+
Sbjct:   56 GYYTGYVKLRDVLTWILEIGISTVTVFALSAENCEKRTQQELSMIFKYLKIGLDELLTSD-LVHKYQVRVKAIGMLDKLPEDLKKLVVDLESTTEKYNKKKLILAICYGGRQEILDAI-----------------RKIMNDYKLGIIDSKSIDESTFR-----KYLYDQELSDIDLLIRSSGEIRISNFLLWHLAYSELFFVDVYWPDFRKIDLWRAIRSFQK 255          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_MYCLE (Undecaprenyl pyrophosphate synthetase OS=Mycobacterium leprae GN=uppS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.556e-14
Identity = 58/216 (26.85%), Postives = 94/216 (43.52%), Query Frame = -1
Query:  281 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWA 928
            GH+ G   ++ +    +EL +K++S+YAFS +N+KR+  E+R+                  L + GVR+ ++G+   +   +          T+ N  I I  C+ Y    EI     E   +       A    NP+  +TE                 + +H+     PD D+ +RTSGE R SNF+LWQ++       + LWP+   R L WA
Sbjct:   92 GHKMGEAVVIDVACGAIELGIKWLSLYAFSTENWKRSVEEVRFLMGFNRDVVRRRREN---LKEMGVRIRWVGSRPRLWRSVINELAIAEHMTAGNDVITINYCVNYGGRTEIAEATREIARLA------AAGRLNPER-ITEST---------------ITRHLQRPDIPDVDLFVRTSGEQRSSNFMLWQAAYTEYIFQDKLWPDYDRRDL-WA 281          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_CHLAB (Undecaprenyl pyrophosphate synthetase OS=Chlamydophila abortus GN=uppS PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.033e-14
Identity = 56/222 (25.23%), Postives = 99/222 (44.59%), Query Frame = -1
Query:  266 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 931
            +GH  G   L ++++    L ++ ++++AFS +NF R+  E+                   +L +  +R+  IGNL  +   ++    KV   T ++    +++ + Y   +E+V          KK        +   + V+E+                +  ++     PDPD+LIRT GE R+SNFLLWQ +   LY  + LWP+    HL+ AI  +Q
Sbjct:   46 SGHYYGAKVLPNIIESAFSLGIEVLTLFAFSTENFLRSAEEVAELFSLFHAQLDEQLP---YLIENKIRLRCIGNLLALPPDLQQQIAKVASETQRHGMRELVLAINYGGKDELVRAF-------KKLHHDLVNKKISLDSVSEEL---------------IRLYLDTSEIPDPDLLIRTGGEMRVSNFLLWQIAYTELYVTDVLWPDFKPYHLLDAIKAYQ 242          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_LACLA (Undecaprenyl pyrophosphate synthetase OS=Lactococcus lactis subsp. lactis GN=uppS PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.655e-14
Identity = 59/233 (25.32%), Postives = 105/233 (45.06%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKY-------GVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYP----DPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GH+AG  +L  +  +     +K +++YAFS +N+ R  +E+++                 F SKY        +++  IG    + +    + ++  + TS+N  +++   + Y    +I+  ++E   + K  Q  +         +TE+               +L KH+   V      DPD++IRTSGE R+SNFL WQS+   LY  +  WP+   + L  AI  FQ+
Sbjct:   39 GHKAGMDSLKDVAVHGARRGIKVMTVYAFSTENWTRPVDEVKFIMSLPI----------DFYSKYVPVLKEENIQIRMIGEREGLPKATLDSIDRAAQETSENDGMILNFAMNYGGRRDIILAIQE---LAKSGQDLSL--------LTEE---------------ELSKHLQTAVLSENLRDPDLIIRTSGEQRMSNFLTWQSAYSELYFAQTAWPDFDDKELDKAISAFQK 235          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_BACSU (Undecaprenyl pyrophosphate synthetase OS=Bacillus subtilis GN=uppS PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.655e-14
Identity = 63/230 (27.39%), Postives = 97/230 (42.17%), Query Frame = -1
Query:  263 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKY-------GVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 931
            AGH  G   +    K   EL VK +++YAFS +N+KR + E+ +               + FL+ Y        V+V  IG+   +      A EK ++ T++N  +++   L Y    EIV   +      K+                ED DE                ++      DP++LIRTSGE RLSNF+LWQ +       + LWP+    H + A+  FQ+
Sbjct:   55 AGHHEGMKVVKRTTKLANELGVKVLTLYAFSTENWKRPKMEVDFLMKLP----------EEFLNTYLPELVEENVQVRIIGDETALPAHTLRAIEKAVQDTAQNDGMILNFALNYGGRTEIVSAAKSLAEKVKEGSLNI-----------EDIDESL-----------FSTYLMTESLQDPELLIRTSGEIRLSNFMLWQVAYSEFVFTDVLWPDFKEDHFLQALGEFQQ 252          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_BUCBP (Undecaprenyl pyrophosphate synthetase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=uppS PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.467e-14
Identity = 59/220 (26.82%), Postives = 93/220 (42.27%), Query Frame = -1
Query:  269 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNF 928
            GH +GF      + + +   +K +++YAFS DN+ R+  EI+                   L+KY +R+  IGN    +  ++     V + T KNT +++ I   YS   EI+  +++  +  K                       KN   N I    +   + +      D++IRT GE RLSNFL+WQ S   LY    LWP+   +    AI  F
Sbjct:   45 GHFSGFYAARRAISFALFHKLKILTLYAFSSDNWNRSPREIKVLMELFFYALSNETNN---LNKYNIRLKVIGNKEKFNTVLKNKIRVVEKETLKNTGLLLNIAANYSGRWEILEAIKKIVVAIKC----------------------KNLSLNAITESTVSDFLLINEKIPVDLVIRTGGECRLSNFLVWQISYSELYFTNTLWPDFDRKEFKKAIDEF 239          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_PROMM (Undecaprenyl pyrophosphate synthetase OS=Prochlorococcus marinus (strain MIT 9313) GN=uppS PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.914e-14
Identity = 55/221 (24.89%), Postives = 93/221 (42.08%), Query Frame = -1
Query:  266 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 928
            GHRAG   L   L+ C +  +  ++ YAFS +N+ R  +E+ +                  L +  VR+ F+G+L  +   ++    +    T +N  I   +C  Y    E+V               Q    R  + D+     +  + E   +   ++          DPD+LIRTSGE R+SNFLLWQ +   ++  +  WP+     L  A+ ++Q
Sbjct:   51 GHRAGVEALKRTLRLCSDWGIGALTAYAFSTENWSRPGDEVNFLMTLFERVLQRELES---LEREKVRIRFLGDLEGLPSGLQELISEATELTVRNNGIHFNVCTNYGGRRELVLAA------------QKLAQRAARGDLDPTLIDENSFEAELLTAGEV----------DPDLLIRTSGERRISNFLLWQLAYAEIHVTDVCWPDFDEVALTKALFDYQ 246          
The following BLAST results are available for this feature:
BLAST of CV885158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
UPPS1_COREF3.136e-1526.79Undecaprenyl pyrophosphate synthetase 1 OS=Coryneb... [more]
UPPS_HELHP5.349e-1525.82Undecaprenyl pyrophosphate synthetase OS=Helicobac... [more]
UPPS_CHLPN6.986e-1525.56Undecaprenyl pyrophosphate synthetase OS=Chlamydia... [more]
UPPS_SULAC1.556e-1426.46Undecaprenyl pyrophosphate synthetase OS=Sulfolobu... [more]
UPPS_MYCLE1.556e-1426.85Undecaprenyl pyrophosphate synthetase OS=Mycobacte... [more]
UPPS_CHLAB2.033e-1425.23Undecaprenyl pyrophosphate synthetase OS=Chlamydop... [more]
UPPS_LACLA2.655e-1425.32Undecaprenyl pyrophosphate synthetase OS=Lactococc... [more]
UPPS_BACSU2.655e-1427.39Undecaprenyl pyrophosphate synthetase OS=Bacillus ... [more]
UPPS_BUCBP3.467e-1426.82Undecaprenyl pyrophosphate synthetase OS=Buchnera ... [more]
UPPS_PROMM5.914e-1424.89Undecaprenyl pyrophosphate synthetase OS=Prochloro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885158 ID=CV885158; Name=CV885158; organism=Citrus sinensis; type=EST; length=943bp
GTAATACATTCCATATGGTTTTATTTTGAAAAGTCACCTTTCATGGGGTT
TGTGGTAGCATATTATCCCATTAAGAATCTAACCGACCACGCAAACATAA
AGGACAGCATTTGCAGATGCTTATCTGTTTGAGCTTCCACCAAAACTCAC
CATGATGTGAACCTAGGAGCAGAAATCACACGATGTTGTTCAGATAGTAT
ATGGTTCTAGGGGGCAAAGGATACTAGAGCTGCTTCTTCTTCTTTTCCAA
ATAGGCGTGGTGTCGTTGAAAGTTCAAGATAGCCCAGATCAAGTGCCGCA
AACCAATTTCTGGCCACAGTGCTTCTGGGGCATACAACATGCAGTTGCTG
CTCTGCCAAAGAAGGAAATTGCTCAGGCGGTTCTCGCCAGAAGTTCGGAT
GAGGATGTCAGGATCTGGATATACACCCATGTACATATGCTTCTCAAGAT
CTACAAGCTTAATAGTATTTTTCTCCTTATTTTTATGCTCATCAGCATCT
TCAGTAACATCATTTTGAGGATTACGTGGCTTAAATGCTTGGGGCTGGGT
TTTCTTTGTAACGAGGCAGGTTTCTTCAACAGTATGGACGATCTCCTCAG
TGGAACTATATGCCAGGCAGATTAGAATCACGATCCTGGTGTTTTTGGAA
GTAGCTCTCATCACTTTTTCAGCTGCAACCCTAATAGGCTCACTCACTAG
TCCTAAGTTGCCTATGAAACATACTCTGACACCATATTTACTAAGAAAAC
CATCTTCCCGAAGCAGCAACTCCATCTTTTCCAACATTAGATCCATCAAA
TATCGAATCTCGTTTTGCGTTCGTTTGAAATTATCTATACTGAAGGCGTA
GATAGAGACATACTTCACACTCAATTCGACGCAGTACTTCAACAGGGACA
TGAGGGTCAAAAATCCAGCCCTGTGACCAGCCCCCTCTCCTGC
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