CV885158

Overview
NameCV885158
Unique NameCV885158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length943
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_BORPE (Undecaprenyl pyrophosphate synthetase OS=Bordetella pertussis GN=uppS PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.914e-14
Identity = 51/214 (23.83%), Postives = 88/214 (41.12%), Query Frame = -1
Query:  290 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHL 931
            AGH  G   +  +++ C    V+Y++++AFS +N++R  +E+                +   L   GVR+  +G+L      ++    +    T  N R+ + +   Y    +I+                              AD    ++ + I    L +H+ M   P+PD+ IRT GE R+SNFL+WQ +    Y  E  WP+ G   L
Sbjct:   39 AGHAKGVHAVRRVVEACGRRGVRYLTLFAFSSENWRRPADEVSLLMRLFVQALEREVDK---LQDQGVRLHVVGDLSAFEPKLQELIAQAQERTEHNDRLHLTVAANYGGRWDILQATRAMLR----------------------ADPGLAQDPDRIDEARLAEHLSMAWAPEPDLFIRTGGEQRISNFLVWQLAYAEFYFTEQFWPDFGADEL 227          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_BORPA (Undecaprenyl pyrophosphate synthetase OS=Bordetella parapertussis GN=uppS PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 5.914e-14
Identity = 51/214 (23.83%), Postives = 88/214 (41.12%), Query Frame = -1
Query:  290 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHL 931
            AGH  G   +  +++ C    V+Y++++AFS +N++R  +E+                +   L   GVR+  +G+L      ++    +    T  N R+ + +   Y    +I+                              AD    ++ + I    L +H+ M   P+PD+ IRT GE R+SNFL+WQ +    Y  E  WP+ G   L
Sbjct:   39 AGHAKGVHAVRRVVEACGRRGVRYLTLFAFSSENWRRPADEVSLLMRLFVQALEREVDK---LQDQGVRLHVVGDLSAFEPKLQELIAQAQERTEHNDRLHLTVAANYGGRWDILQATRAMLR----------------------ADPGLAQDPDRIDEARLAEHLSMAWAPEPDLFIRTGGEQRISNFLVWQLAYAEFYFTEQFWPDFGADEL 227          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_BORBR (Undecaprenyl pyrophosphate synthetase OS=Bordetella bronchiseptica GN=uppS PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 5.914e-14
Identity = 51/214 (23.83%), Postives = 88/214 (41.12%), Query Frame = -1
Query:  290 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHL 931
            AGH  G   +  +++ C    V+Y++++AFS +N++R  +E+                +   L   GVR+  +G+L      ++    +    T  N R+ + +   Y    +I+                              AD    ++ + I    L +H+ M   P+PD+ IRT GE R+SNFL+WQ +    Y  E  WP+ G   L
Sbjct:   39 AGHAKGVHAVRRVVEACGRRGVRYLTLFAFSSENWRRPADEVSLLMRLFVQALEREVDK---LQDQGVRLHVVGDLSAFEPKLQELIAQAQERTEHNDRLHLTVAANYGGRWDILQATRAMLR----------------------ADPGLAQDPDRIDEARLAEHLSMAWAPEPDLFIRTGGEQRISNFLVWQLAYAEFYFTEQFWPDFGADEL 227          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_PASMU (Undecaprenyl pyrophosphate synthetase OS=Pasteurella multocida GN=uppS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.724e-14
Identity = 53/224 (23.66%), Postives = 97/224 (43.30%), Query Frame = -1
Query:  257 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQRHH 928
            GH+ G   +   + Y  ++ +K +++YAFS +N+ R + E+                +   L K  +++  +G++   S  ++    +  + T  NT + + I   Y    +IV         TK    Q  + +   +++                   L++ +     P  D+LIRTSGE R+SNFLLWQ +   LY  + LWP+   +    AI+ +Q+ H
Sbjct:   34 GHKNGVKAVREAVSYARKVGIKVLTLYAFSSENWNRPKKEVNALMALFMQALDLEVKK---LHKNNIKLNILGDVTGFSASLQNKIHQAEKLTENNTALTLNIAANYGGCWDIVQA-------TKSLAQQVKEGKLAVDEINAQV---------------LQQALVTKEQPQVDLLIRTSGEQRISNFLLWQIAYAELYFSDVLWPDFNEKEFNEAIIAYQQRH 232          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: ZFPP_MYCTU (Short-chain Z-isoprenyl diphosphate synthetase OS=Mycobacterium tuberculosis GN=Rv1086 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.009e-13
Identity = 55/227 (24.23%), Postives = 100/227 (44.05%), Query Frame = -1
Query:  251 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ-RHHAY 928
            G+R G   +  +L++C E  ++  ++Y  S +N +R  +E+                     + + VR   +G+LGL+ E         + +T +     + + + Y    EIV  V            +A   +   N  T +      +  + + +  + +++Y    PDPD++IRTSGE RLS FLLWQS+   ++  EA WP       + A+ ++  RH +Y
Sbjct:   57 GYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVVEEICAP---ANHWSVRT--VGDLGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRREIVDAV------------RALLSKELANGATAE------ELVDAVTVEGISENLYTSGQPDPDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAFRHVDFLRALRDYSARHRSY 260          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_VIBPA (Undecaprenyl pyrophosphate synthetase OS=Vibrio parahaemolyticus GN=uppS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.317e-13
Identity = 59/220 (26.82%), Postives = 99/220 (45.00%), Query Frame = -1
Query:  269 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNF 928
            GH+ G   +   +    +L +K ++++AFS +N++R + E+                +   L K  +++  IG+    SE ++    +    T+ NT +VI I   Y    +I          T+  +  A K RN +  V ED +E             + +H+ M   P+ D+LIRTSGE R+SNF+LWQ +   +Y     WPE     L+ A+  F
Sbjct:   36 GHKKGVNAVRKTVAAASKLGIKAMTLFAFSSENWRRPEEEVGLLMELFITVLSSEVKK---LHKNNLQLRVIGDTSRFSERLQKKIVEAENLTASNTGMVINIAANYGGKWDI----------TEAAKALALKARNGEIRV-EDINEQL-----------ITEHLTMADLPEVDLLIRTSGECRISNFMLWQMAYAEMYFTPEFWPEFDEDSLVEAVTWF 230          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_METAC (Undecaprenyl pyrophosphate synthetase OS=Methanosarcina acetivorans GN=uppS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.317e-13
Identity = 60/236 (25.42%), Postives = 106/236 (44.92%), Query Frame = -1
Query:  266 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYG--------VRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEE--TCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMY--MGV-YPDPDILIRTSGENRLSNFLLWQS--SNCMLYAPEALWPEIGLRHLIWAILNFQ 928
            GH  G      ++++C E+ VK +++YAFS +NF+R++ E+                 + FL  Y          ++  IG+   +   +  + EK+ +AT  + +  + + +AY   ++I+  V +   C+ + K                ED DE+            + KH+Y   GV  P+ D+++RT G+ R+SNFL WQ+  S C  Y     WPE     L+ +I  +Q
Sbjct:   51 GHAMGAEVTEQVIEWCYEIGVKELTLYAFSTENFQRSEEEV---------DGLFNLINEKFLKLYNDKRTYEKETQIRVIGDRTKLPAFLNKSIEKIEKATETHRKFNLNVAIAYGGRQDIMQAVRDIAACVSSGKLS-------------LEDVDENL-----------ISKHLYPAPGVSVPNVDLIVRTGGDERVSNFLPWQANGSECATYFCAPFWPEFRKIDLLRSIRVYQ 253          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: ZFPP_MYCBO (Short-chain Z-isoprenyl diphosphate synthetase OS=Mycobacterium bovis GN=Mb1115 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.721e-13
Identity = 53/224 (23.66%), Postives = 97/224 (43.30%), Query Frame = -1
Query:  257 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQRHH 928
            G+R G   +  +L++C E  ++  ++Y  S +N +R  +E+                     + + VR   +G+LGL+ E         + +T +     + + + Y    EIV  V            +A   +   N  T +      +  + + +  + +++Y    PDPD++IRTSGE RLS FLLWQS+   ++  EA WP       + A+ ++   H
Sbjct:   57 GYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVVEEICAP---ANHWSVRT--VGDLGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRREIVDAV------------RALLSKELANGATAE------ELVDAVTVEGISENLYTSGQPDPDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAFRHVDFLRALRDYSARH 257          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_RHIME (Undecaprenyl pyrophosphate synthetase OS=Rhizobium meliloti GN=uppS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.721e-13
Identity = 54/207 (26.09%), Postives = 93/207 (44.93%), Query Frame = -1
Query:  308 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPE 928
            GHR G   +   ++   E+ ++Y++++AFS +N+ R +NE+                +   L +  VR+  IG+   +S  I     +    T  NT I ++I   Y + +E+   +       ++   +    R    ++T +      +  +TI    +         PDPD++IRTSGE RLSNFLLWQ +   L     LWP+
Sbjct:   34 GHRKGVEAVRGAVRTAAEIGIRYLTLFAFSSENWNRPENEVSDLMGLLKAFIRRDLAD---LHRENVRIRVIGDRSNLSGDILPLLIEAEETTIANTGITVVIAFNYGARDELARAM-------RRLAGEVAAGRLRPEEITAE------RISSTIDTAGI---------PDPDLIIRTSGEERLSNFLLWQGAYSELLFIPDLWPD 215          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_METMA (Undecaprenyl pyrophosphate synthetase OS=Methanosarcina mazei GN=uppS PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.721e-13
Identity = 60/240 (25.00%), Postives = 109/240 (45.42%), Query Frame = -1
Query:  251 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEE--TCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMY--MGV-YPDPDILIRTSGENRLSNFLLWQS--SNCMLYAPEALWPEIGLRHLIWAILNFQ-------RHHAY 928
            GH  G      ++++C E+ VK +++YAFS +NF+R++ E+                 D    +  ++V  IG+   +   +  + +++ +AT  + +  + + +AY   ++I+  V +  TC+ + K   +         DV E                 + KH+Y   GV  P+ D++IRT G+ R+SNFL WQ+  S C  Y     WPE     L+ ++  +Q       R H+Y
Sbjct:   51 GHAMGAEVTEQVIEWCYEIGVKQLTLYAFSTENFQRSEEEVG-GLFNLINEKFLKLHTDKRTYEKEMQVRVIGDRTKLPAYLNESIDRIEKATEHHRKFSLNVAIAYGGRQDIMQAVRDIATCVSSGKLSLE---------DVNESL---------------ISKHLYPAPGVPVPNVDLIIRTGGDERISNFLPWQANGSECATYFCAPFWPEFRKIDLLRSVRVYQARKEEKKREHSY 265          
The following BLAST results are available for this feature:
BLAST of CV885158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
UPPS_BORPE5.914e-1423.83Undecaprenyl pyrophosphate synthetase OS=Bordetell... [more]
UPPS_BORPA5.914e-1423.83Undecaprenyl pyrophosphate synthetase OS=Bordetell... [more]
UPPS_BORBR5.914e-1423.83Undecaprenyl pyrophosphate synthetase OS=Bordetell... [more]
UPPS_PASMU7.724e-1423.66Undecaprenyl pyrophosphate synthetase OS=Pasteurel... [more]
ZFPP_MYCTU1.009e-1324.23Short-chain Z-isoprenyl diphosphate synthetase OS=... [more]
UPPS_VIBPA1.317e-1326.82Undecaprenyl pyrophosphate synthetase OS=Vibrio pa... [more]
UPPS_METAC1.317e-1325.42Undecaprenyl pyrophosphate synthetase OS=Methanosa... [more]
ZFPP_MYCBO1.721e-1323.66Short-chain Z-isoprenyl diphosphate synthetase OS=... [more]
UPPS_RHIME1.721e-1326.09Undecaprenyl pyrophosphate synthetase OS=Rhizobium... [more]
UPPS_METMA1.721e-1325.00Undecaprenyl pyrophosphate synthetase OS=Methanosa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885158 ID=CV885158; Name=CV885158; organism=Citrus sinensis; type=EST; length=943bp
GTAATACATTCCATATGGTTTTATTTTGAAAAGTCACCTTTCATGGGGTT
TGTGGTAGCATATTATCCCATTAAGAATCTAACCGACCACGCAAACATAA
AGGACAGCATTTGCAGATGCTTATCTGTTTGAGCTTCCACCAAAACTCAC
CATGATGTGAACCTAGGAGCAGAAATCACACGATGTTGTTCAGATAGTAT
ATGGTTCTAGGGGGCAAAGGATACTAGAGCTGCTTCTTCTTCTTTTCCAA
ATAGGCGTGGTGTCGTTGAAAGTTCAAGATAGCCCAGATCAAGTGCCGCA
AACCAATTTCTGGCCACAGTGCTTCTGGGGCATACAACATGCAGTTGCTG
CTCTGCCAAAGAAGGAAATTGCTCAGGCGGTTCTCGCCAGAAGTTCGGAT
GAGGATGTCAGGATCTGGATATACACCCATGTACATATGCTTCTCAAGAT
CTACAAGCTTAATAGTATTTTTCTCCTTATTTTTATGCTCATCAGCATCT
TCAGTAACATCATTTTGAGGATTACGTGGCTTAAATGCTTGGGGCTGGGT
TTTCTTTGTAACGAGGCAGGTTTCTTCAACAGTATGGACGATCTCCTCAG
TGGAACTATATGCCAGGCAGATTAGAATCACGATCCTGGTGTTTTTGGAA
GTAGCTCTCATCACTTTTTCAGCTGCAACCCTAATAGGCTCACTCACTAG
TCCTAAGTTGCCTATGAAACATACTCTGACACCATATTTACTAAGAAAAC
CATCTTCCCGAAGCAGCAACTCCATCTTTTCCAACATTAGATCCATCAAA
TATCGAATCTCGTTTTGCGTTCGTTTGAAATTATCTATACTGAAGGCGTA
GATAGAGACATACTTCACACTCAATTCGACGCAGTACTTCAACAGGGACA
TGAGGGTCAAAAATCCAGCCCTGTGACCAGCCCCCTCTCCTGC
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