CV885158

Overview
NameCV885158
Unique NameCV885158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length943
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_SULSO (Undecaprenyl pyrophosphate synthetase OS=Sulfolobus solfataricus GN=uppS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.247e-13
Identity = 60/221 (27.15%), Postives = 97/221 (43.89%), Query Frame = -1
Query:  263 GFLTLMSLLKYCVELSVKYVSIYAFSIDNF-KRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKE--KNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 916
            G+  L  +L + +EL +K ++++  S +N  KR QNE+                 D  + KY V+V  IG L  + + +     +V+  TS   +  + + + Y   +EI+  V                            D+++N +  K+ I      K+ Y     D D++IRTSGE R+SNFLLW  +   L+  EA WPE     L  AI +FQ+
Sbjct:   60 GYKKLKEVLIWLLELGIKNITVFVLSTENCDKRKQNELSIITTYIKRGIQDLLE-DPIVDKYEVKVSAIGKLDKLPKDLIDYLNRVVEKTSNYDKRKLTLAICYGGRQEILDAVVRLL------------------------DDYRNGKIVKSEINEETFRKYFYDSELQDIDLVIRTSGEVRISNFLLWHVAYSELFFCEAYWPEFRKIDLWRAIRSFQK 255          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_CAUCR (Undecaprenyl pyrophosphate synthetase OS=Caulobacter crescentus GN=uppS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.247e-13
Identity = 56/221 (25.34%), Postives = 92/221 (41.63%), Query Frame = -1
Query:  266 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 928
            GHRAG   L   ++     +V  ++++ FS +N+ R   E+                    L+K GVRV  IG    +S  I    E+  R T++N+  V+ +   Y    +I           ++ + +A       +D+ E                  E+ +     P PD+++RTSGE R+SNFLLW  +   L   + LWP+ G   L  AI  ++
Sbjct:   46 GHRAGVNALKRTVEGAQSQNVGVLTVFGFSTENWSRPPQEVSELMGLLKAYVESDLER---LAKAGVRVRIIGRRTGLSPDIAEVIERAERRTAQNSEFVLQVAFNYGGQADITDAARAFAERVERGEAKA-------SDLNEKT---------------FEQFLSTASAPPPDLIVRTSGERRISNFLLWDCAYAELVFQDVLWPDYGPEALAAAIAEYR 241          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_BIFLO (Undecaprenyl pyrophosphate synthetase OS=Bifidobacterium longum GN=uppS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.247e-13
Identity = 57/223 (25.56%), Postives = 99/223 (44.39%), Query Frame = -1
Query:  260 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQRH 928
            GH+A    +   +   +E  V+Y+S+Y FS +N+KR+  E+R+              +   + ++GVRV + G    + + +    E     T  N  I ++ C+ Y    EI     + C    +                E  D   + ++ T K++    H+Y    PD D++IRTSGE R SNFL W+++   L     L+P+ G R ++W  ++   H
Sbjct:   59 GHQAAEPVVFDTIAGAIEAGVRYLSLYTFSTENWKRSPQEVRFLMGFSREIIHRRVEQ---MDEWGVRVRWSGRRPKLWKSVIDELEAAEERTKNNKVIDVVFCINYGGRAEIA----DACAAIAR----------------EVRDGKISGDRVTEKMI--ADHLYNPDIPDCDLVIRTSGEQRTSNFLPWEAAYAELDFVPELFPDCG-RDVLWRSIDHYIH 255          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_PHOPR (Undecaprenyl pyrophosphate synthetase OS=Photobacterium profundum GN=uppS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.935e-13
Identity = 57/207 (27.54%), Postives = 91/207 (43.96%), Query Frame = -1
Query:  308 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPE 928
            GH+AG   +   +     L VK ++++AFS +N++R ++E+                    L K  +++  IG+    SE ++         T+ NT +V+ I   Y    +I+         TKK   Q  +     +D+TED                L   M     PD D++IRTSGE R+SNF+LWQ++   LY  E  WP+
Sbjct:   40 GHKAGVEAVRKSVTTANRLGVKVLTLFAFSSENWRRPEDEVSLLMELFMTVLTREVKR---LHKNNIQLRIIGDKSGFSERLQRKIATSEALTANNTGLVLNIAANYGGQWDILQA-------TKKLAVQIAEQGLTASDITEDM---------------LSAGMSTADLPDVDLMIRTSGECRISNFMLWQAAYAELYFTEQHWPD 221          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_WOLSU (Undecaprenyl pyrophosphate synthetase OS=Wolinella succinogenes GN=uppS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.007e-13
Identity = 54/222 (24.32%), Postives = 95/222 (42.79%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GH  G  T+  +  +C +  + ++++YAFS +N+KR + E+ +                    K  +R   IG+L   S  +    E + + ++  + +  ++ L Y S +EI+   +              K      +V+E+               +L + +     PD D+L+RT G+ RLSN+LLWQSS   L+    LWP+     L   I  F+R
Sbjct:   31 GHEKGAETIREITMFCSKSDISFLTLYAFSTENWKRPKTEVDFLMRLLSDYLKKEAEV---YLKNNIRFKAIGDLSRFSSRLLDEIETLTQKSASCSGLTQVLALNYGSKDEIIRATQ--------------KMIEAGVEVSEE---------------NLSRFLDTAFAPDVDMLVRTGGDYRLSNYLLWQSSYAELFFTPTLWPDFTAGELAIQIEEFKR 220          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_RALSO (Undecaprenyl pyrophosphate synthetase OS=Ralstonia solanacearum GN=uppS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.007e-13
Identity = 51/208 (24.52%), Postives = 90/208 (43.27%), Query Frame = -1
Query:  308 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPE 931
            AGH  G   + + ++      V+Y++++AFS +N++R   EI +              +   L+  G+R+  +G+L   S  I++   +    T+ N  + + I   Y    +I+  +           P+A         +TE+A               L  +M +    +PD+ IRT GE R+SNF+LWQ +   LY  E  WP+
Sbjct:   39 AGHSRGLDAVRAAVQAADHRGVRYLTLFAFSSENWRRPAEEISFLMKLFMTALRREVSK---LNDSGIRLRVVGDLSAFSPRIQLMIREAEAKTATNPGLTVTIAANYGGRWDILQAMRALVADQPDIAPEA---------ITEEA---------------LSPYMALAYASEPDLFIRTGGEQRISNFMLWQLAYSELYFTERYWPD 219          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_RHOBA (Undecaprenyl pyrophosphate synthetase OS=Rhodopirellula baltica GN=uppS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.115e-12
Identity = 51/207 (24.64%), Postives = 91/207 (43.96%), Query Frame = -1
Query:  308 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPE 928
            GHR G  T+ ++ +   EL +  +++Y  S +N+KR Q E+ +                  +    +R+ FIG    +S+ +     K    +  NT   +++ + Y   +E+          T+ T+  A + R+ +  + E  +   ++  +T  L            PD D++IRT G+ R+SN+LLWQ S   LY     WPE
Sbjct:   36 GHRRGVTTVRTVTEMASELKLDALTLYCLSSENWKRPQAELDFLMHLLQQYLVEERRT---IRDQNMRLRFIGRRDRLSDEVLKEIAKTQAVSENNTGTELVLAVDYGGRDEL----------TRMTRQLAQQVRDGERSIDEITESLVDESLDTAGL------------PDVDLMIRTGGDIRISNYLLWQISYAELYFTPKCWPE 217          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_PSESM (Undecaprenyl pyrophosphate synthetase OS=Pseudomonas syringae pv. tomato GN=uppS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.115e-12
Identity = 52/208 (25.00%), Postives = 92/208 (44.23%), Query Frame = -1
Query:  308 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPE 931
            AGH+AG   + ++++ C E  V+ ++++AFS +N++R   E+                    L++  + +  IG+       ++ A  +    TS N+R V+ I   Y    +I    +    + ++ Q    +P     D+T                  L+  +  G  P PD+ IRT GE+R+SNFLLWQ +   LY  +  WP+
Sbjct:   36 AGHKAGVDAVRAVIEVCAEAKVEVLTLFAFSSENWQRPAEEVGALMELFFTALRRETKR---LNENDISLRIIGDRSRFHPELQAAMREAEVRTSGNSRFVLQIAANYGGQWDIAQAAQR---LAREVQAGHLQPE----DITPQL---------------LQTCLATGDLPLPDLCIRTGGEHRISNFLLWQLAYAELYFSDLFWPD 218          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_ACIAD (Undecaprenyl pyrophosphate synthetase OS=Acinetobacter sp. (strain ADP1) GN=uppS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.457e-12
Identity = 52/228 (22.81%), Postives = 95/228 (41.67%), Query Frame = -1
Query:  269 EGAGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMY-----MGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNF 937
            +G GHR G  +L  ++++C    V+ ++++AFS +N+ R   E+                    + K+ + + FIG+   +SE +          T+  T + + I ++Y    +I    ++                             K+     + +  ++ H++     +   P  D+LIRT G+ RLSNFLLWQ++   LY  E LWPE  +     A+  F
Sbjct:   31 KGDGHREGKNSLDPIVEHCCTRGVQALTVFAFSSENWNRPAFEVDLLMKLLEEAIHEQLPR---MRKFNIALRFIGDRSKLSEHLTDLMTHAENETAHFTSMTLTIAISYGGMWDITDAAKQIA---------------------------KDVSDGIVDIEQIDTHLFGRYVSLNQLPPVDLLIRTGGDYRLSNFLLWQAAYAELYFTETLWPEFSIDEFDHALAVF 228          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_HAEDU (Undecaprenyl pyrophosphate synthetase OS=Haemophilus ducreyi GN=uppS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.902e-12
Identity = 58/222 (26.13%), Postives = 97/222 (43.69%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GH+ G   + + + +  +  +K +++YAFS +N+ R   E+                +   L K+ +R+  +G+    S+ ++    +    T+ NTR+ + I   Y S  +I          TKK   +    +    D+T         EK    LV  E+       P  D+LIRTSGE R+SNFLLWQ +   L+  + LWP+        AI  +Q+
Sbjct:   37 GHQNGVNAVRAAVHFAAKYGIKVLTLYAFSSENWNRPATEVSALMSLFIQALNTEVSK---LHKHNIRLNILGDKTRFSDSLQKRIIESETLTAHNTRLTLNIAANYGSHWDITEA-------TKKLAEKVKLGKISVTDITP--------EKVQRALVTAEQ-------PPVDLLIRTSGEQRISNFLLWQIAYAELFFSDVLWPDFDETSFSEAIYAYQQ 233          
The following BLAST results are available for this feature:
BLAST of CV885158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
UPPS_SULSO2.247e-1327.15Undecaprenyl pyrophosphate synthetase OS=Sulfolobu... [more]
UPPS_CAUCR2.247e-1325.34Undecaprenyl pyrophosphate synthetase OS=Caulobact... [more]
UPPS_BIFLO2.247e-1325.56Undecaprenyl pyrophosphate synthetase OS=Bifidobac... [more]
UPPS_PHOPR2.935e-1327.54Undecaprenyl pyrophosphate synthetase OS=Photobact... [more]
UPPS_WOLSU5.007e-1324.32Undecaprenyl pyrophosphate synthetase OS=Wolinella... [more]
UPPS_RALSO5.007e-1324.52Undecaprenyl pyrophosphate synthetase OS=Ralstonia... [more]
UPPS_RHOBA1.115e-1224.64Undecaprenyl pyrophosphate synthetase OS=Rhodopire... [more]
UPPS_PSESM1.115e-1225.00Undecaprenyl pyrophosphate synthetase OS=Pseudomon... [more]
UPPS_ACIAD1.457e-1222.81Undecaprenyl pyrophosphate synthetase OS=Acinetoba... [more]
UPPS_HAEDU1.902e-1226.13Undecaprenyl pyrophosphate synthetase OS=Haemophil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885158 ID=CV885158; Name=CV885158; organism=Citrus sinensis; type=EST; length=943bp
GTAATACATTCCATATGGTTTTATTTTGAAAAGTCACCTTTCATGGGGTT
TGTGGTAGCATATTATCCCATTAAGAATCTAACCGACCACGCAAACATAA
AGGACAGCATTTGCAGATGCTTATCTGTTTGAGCTTCCACCAAAACTCAC
CATGATGTGAACCTAGGAGCAGAAATCACACGATGTTGTTCAGATAGTAT
ATGGTTCTAGGGGGCAAAGGATACTAGAGCTGCTTCTTCTTCTTTTCCAA
ATAGGCGTGGTGTCGTTGAAAGTTCAAGATAGCCCAGATCAAGTGCCGCA
AACCAATTTCTGGCCACAGTGCTTCTGGGGCATACAACATGCAGTTGCTG
CTCTGCCAAAGAAGGAAATTGCTCAGGCGGTTCTCGCCAGAAGTTCGGAT
GAGGATGTCAGGATCTGGATATACACCCATGTACATATGCTTCTCAAGAT
CTACAAGCTTAATAGTATTTTTCTCCTTATTTTTATGCTCATCAGCATCT
TCAGTAACATCATTTTGAGGATTACGTGGCTTAAATGCTTGGGGCTGGGT
TTTCTTTGTAACGAGGCAGGTTTCTTCAACAGTATGGACGATCTCCTCAG
TGGAACTATATGCCAGGCAGATTAGAATCACGATCCTGGTGTTTTTGGAA
GTAGCTCTCATCACTTTTTCAGCTGCAACCCTAATAGGCTCACTCACTAG
TCCTAAGTTGCCTATGAAACATACTCTGACACCATATTTACTAAGAAAAC
CATCTTCCCGAAGCAGCAACTCCATCTTTTCCAACATTAGATCCATCAAA
TATCGAATCTCGTTTTGCGTTCGTTTGAAATTATCTATACTGAAGGCGTA
GATAGAGACATACTTCACACTCAATTCGACGCAGTACTTCAACAGGGACA
TGAGGGTCAAAAATCCAGCCCTGTGACCAGCCCCCTCTCCTGC
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