CV885158

Overview
NameCV885158
Unique NameCV885158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length943
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885158_ssr233 microsatellite CV885158_ssr233:233..244. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_THEEB (Undecaprenyl pyrophosphate synthetase OS=Thermosynechococcus elongatus (strain BP-1) GN=uppS PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.928e-21
Identity = 63/222 (28.38%), Postives = 104/222 (46.85%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GH+ G  TL  LL+ C +  ++ ++ YAFS +N+ R   E+ +                G +   GV++ F+G+L  + + ++   E+ + AT+ N +I  ++   Y    EI+H         K               + + AD         I  V  E+H+Y G  PDPD+LIRTSGE R+SNF LWQ +   +Y  + LWP+        A+ ++Q+
Sbjct:   47 GHQRGVDTLKDLLRCCKDWGIEALTAYAFSTENWGRPLPEVEFLMTLFEQVLRREL---GEMVAEGVQIHFVGDLTCLPKSLQAEIERAVAATANNQKIKFVVATNYGGRREIIHACRSIAAQVKA-------------GLLDPAD---------IDEVLFERHLYTGGLPDPDLLIRTSGELRISNFFLWQVAYAEIYVTKTLWPDFDRSAFHEALRDYQQ 243          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_OCEIH (Undecaprenyl pyrophosphate synthetase OS=Oceanobacillus iheyensis GN=uppS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.824e-21
Identity = 69/223 (30.94%), Postives = 103/223 (46.19%), Query Frame = -1
Query:  263 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 931
            AGHR G  T+  ++K  V  +VK +++Y FS +N+KR ++E+ +                  L +  VRV  IG+   V +  + A E  M  T  N  +V+   L Y S  EI+H V++    TK ++              E  DE              EKH++     DPD+LIRT GE RLSNF+LWQ +    +  E LWPE        A++ +Q+
Sbjct:   47 AGHREGVSTVNRIVKTAVNANVKVLTLYTFSTENWKRPKSEVDFILKLPKEFLHVYLPG---LIENNVRVQTIGDFNAVPKHTQDAIEYAMEKTKDNDGLVLNFALNYGSRYEIIHAVKQIVQKTKASELDV-----------EQLDESY-----------FEKHLFTNGLSDPDLLIRTGGEYRLSNFMLWQLAYTEFWFTEKLWPEFDEDTFHQALMEYQQ 244          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_METKA (Undecaprenyl pyrophosphate synthetase OS=Methanopyrus kandleri GN=uppS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.824e-21
Identity = 68/222 (30.63%), Postives = 107/222 (48.20%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GHR G   L  +L++C++L VK V++YA S +N  R + E++                +  + +  V V  +G L L+   +R A +K  RAT +     + + +AY   +EI+  V E                   +DV     +    ++ T +     K++Y+G  PDP+++IRTSGE RLSNFLLW S+   LY  +  WPE     L+ AI  FQ+
Sbjct:   66 GHRYGADKLEDVLEWCLDLGVKAVTVYALSTENLNRPKEELKRLFDLMEERFKALAESER-IHRRKVAVRAVGRLHLLPTRVRRAIKKAERATKEYKDRFLNVAVAYGGRQEIIDAVREIA-----------------HDVKVGRLDPDEIDEGTFR-----KYVYVGDLPDPELIIRTSGEERLSNFLLWYSAYSELYFVDVYWPEFRKIDLLRAIREFQK 264          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_GEOKA (Undecaprenyl pyrophosphate synthetase OS=Geobacillus kaustophilus GN=uppS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.995e-21
Identity = 69/223 (30.94%), Postives = 107/223 (47.98%), Query Frame = -1
Query:  263 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 931
            AGH  G   +  + ++  EL ++ +S+YAFS +N+KR ++E+ Y              E   L    V+V  IG+   + +  R A EK ++ TS NT +V+   L Y S  EI   V++   + K  +     P     D+TE                 +  ++      DPD+LIRTSGE RLSNF+LWQ +   L+  + LWP+   +H + AI  +QR
Sbjct:   49 AGHYEGMQVVRKITRFANELGIQILSLYAFSTENWKRPKSEVDYLMKLPEQFLTTFLPE---LVAENVKVQVIGHTEALPDHTRRAVEKAVKETSGNTGLVLNFALNYGSRAEIAAAVKQ---IAKDVERGMLAPE----DITEPL---------------ISSYLMTSGLADPDLLIRTSGEIRLSNFMLWQLAYTELWFTDVLWPDFTEQHFLEAIAAYQR 246          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_FUSNN (Undecaprenyl pyrophosphate synthetase OS=Fusobacterium nucleatum subsp. nucleatum GN=uppS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.995e-21
Identity = 68/222 (30.63%), Postives = 102/222 (45.95%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GH  G  TL   L+Y  E+ VKY+++YAFS +N+ R Q+E+                    + K  +R    G    V E ++   EK+   T  N +I + I   Y S  EIV  V                     N + +D  E+  +E       D  K++Y   +PDPD++IRTSGE R+SNFLLWQ +   LY  + LWP+   + +  AI ++ +
Sbjct:   30 GHMEGAKTLRKALEYLTEIGVKYLTVYAFSTENWNRPQDEVSTLMKLFLKYIKNERKN---MMKNKIRFFVSGRKNNVPEKLQKEIEKLEEETKNNDKITLNIAFNYGSRAEIVDAV---------------------NRIIKDGKENITEE-------DFSKYLYND-FPDPDLVIRTSGEMRISNFLLWQIAYSELYITDVLWPDFDEKEIDKAIESYNQ 219          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_BACCR (Undecaprenyl pyrophosphate synthetase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=uppS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.995e-21
Identity = 67/222 (30.18%), Postives = 107/222 (48.20%), Query Frame = -1
Query:  266 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 931
            AGH  G   +  + K+  +L+VK +++YAFS +N+KR + E+ Y              E   L +  V+V  IG    +    R A EK M  T +NT +++   L Y S +EIV  V+                      + +D +E K + +   + + L  ++     PDP++LIRTSGE R+SNF+LWQ +    +  +  WP+    HL+ AI +FQ
Sbjct:   53 AGHHEGMQVVKKITKFASKLNVKVLTLYAFSTENWKRPKKEVDYLMKLPEEFLGTFLPE---LIEENVQVRVIGQKDRLPTHTRRAMEKAMEDTKENTGLILNFALNYGSRDEIVSAVQH---------------------MMKDNEEGKIRSEEVSEEM-LSSYLMTSSLPDPELLIRTSGELRISNFMLWQIAYSEFWFTDVYWPDFKEEHLLNAITDFQ 249          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_THEVO (Undecaprenyl pyrophosphate synthetase OS=Thermoplasma volcanium GN=uppS PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.524e-21
Identity = 69/226 (30.53%), Postives = 111/226 (49.12%), Query Frame = -1
Query:  263 EGAGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKN-TRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 937
            E  GH  G   +  +L +C+EL +K V+ YAFS +NFKR+  E+ +               D  + K  + V  IGN+ ++ E +R    K+   T+KN +   + + + Y   EEI+  +       K+    A   +   +++ E      +K +N         ++Y G  PDPD+++RTSGE R+SNFLLWQS+   LY  +  WPE      + AI ++QR
Sbjct:   50 ENEGHVKGKNKVEEVLDWCMELDIKIVTFYAFSTENFKRSPEEVDFLFHLINDAFISLLK-DERVYKNKINVKVIGNVSMLPEYLRETI-KITEETTKNFSNYHMNLAIGYGGREEILDAI-------KRIARDAIAGKINVDEIDE------SKFRN---------YLYDGNLPDPDLILRTSGEERISNFLLWQSAYSELYFSDVYWPEFSKLDFLRAIYSYQR 251          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_PYRHO (Undecaprenyl pyrophosphate synthetase OS=Pyrococcus horikoshii GN=uppS PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.524e-21
Identity = 69/224 (30.80%), Postives = 110/224 (49.11%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETC--LVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GH  G   L  +L++C EL ++ +++YAFS +NFKR++ E+                 D  + +YGVRV  IG   L+ + +R A E+  RAT K    ++ + LAY    EIV  V++    +++ K +              E+ DE             L +++Y+   PDPDI+IRT GE R+SNFLL+Q +   L+  +  +PE      +  I  FQ+
Sbjct:   59 GHLFGSKKLEEILEWCHELGIRILTVYAFSTENFKRSKEEVD-RLMKLFEEKFRELVTDKRVHEYGVRVNVIGRKELLPKSVRDAVEEAERATRKYNNYILNVALAYGGRSEIVDAVKDIARDVISGKLR-------------IEEIDEEL-----------LRRYLYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQK 257          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_BACHD (Undecaprenyl pyrophosphate synthetase OS=Bacillus halodurans GN=uppS PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.524e-21
Identity = 65/223 (29.15%), Postives = 105/223 (47.09%), Query Frame = -1
Query:  263 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 931
            AGHR G   +  +++  ++L ++ +S+YAFS +N+KR + E+ Y                  L +  V+V  +G L  + E    A  K M  T  NT +++   L Y S  E+V  +++   V K+ +          + +TED                + +H+      DPD+LIRTSGE RLSNF+LWQ +    +  + LWP+    HL  AI  +Q+
Sbjct:   51 AGHREGMKVINKIVRKAIDLKIEVLSLYAFSTENWKRPRTEVDYLLKLPERFLKLELPN---LMEENVQVRIMGGLDTLPEHTAKAVTKAMEETKDNTGLILNFALNYGSRYEMVEAMKQ---VAKEVETGTLS----SDAITEDV---------------ISRHLMTADLRDPDLLIRTSGEIRLSNFMLWQLAYSEFWFTDVLWPDFTEHHLTEAIAVYQK 248          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_THEAC (Undecaprenyl pyrophosphate synthetase OS=Thermoplasma acidophilum GN=uppS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.453e-20
Identity = 67/228 (29.39%), Postives = 105/228 (46.05%), Query Frame = -1
Query:  263 EGAGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEK---HMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 937
            E  GH  G   +  ++ +C+EL ++ V+ YAFS +NF+R+  E+ +               D  + K  + V  IGNL ++   +R     V   T       + + + Y   EEI+  ++                      +T DA + K      I  +D EK   ++Y G  PDPD+++RTSGE R+SNFLLWQS+   LY  +  WPE      + AI ++QR
Sbjct:   50 ENEGHVKGKEKVEEVVDWCMELDIRIVTFYAFSTENFRRSPEEVDFLFHLIDNAFKSLLK-DERVYKNRINVKVIGNLSILPAYLRQTIHIVEETTKNFNNYQLNLAIGYGGREEILDAIKR---------------------ITRDAMDGKLN----IDELDEEKFRMYLYDGRIPDPDLILRTSGEERISNFLLWQSAYSELYFSDVYWPEFSKLDFLRAIYSYQR 251          
The following BLAST results are available for this feature:
BLAST of CV885158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
UPPS_THEEB2.928e-2128.38Undecaprenyl pyrophosphate synthetase OS=Thermosyn... [more]
UPPS_OCEIH3.824e-2130.94Undecaprenyl pyrophosphate synthetase OS=Oceanobac... [more]
UPPS_METKA3.824e-2130.63Undecaprenyl pyrophosphate synthetase OS=Methanopy... [more]
UPPS_GEOKA4.995e-2130.94Undecaprenyl pyrophosphate synthetase OS=Geobacill... [more]
UPPS_FUSNN4.995e-2130.63Undecaprenyl pyrophosphate synthetase OS=Fusobacte... [more]
UPPS_BACCR4.995e-2130.18Undecaprenyl pyrophosphate synthetase OS=Bacillus ... [more]
UPPS_THEVO6.524e-2130.53Undecaprenyl pyrophosphate synthetase OS=Thermopla... [more]
UPPS_PYRHO6.524e-2130.80Undecaprenyl pyrophosphate synthetase OS=Pyrococcu... [more]
UPPS_BACHD6.524e-2129.15Undecaprenyl pyrophosphate synthetase OS=Bacillus ... [more]
UPPS_THEAC1.453e-2029.39Undecaprenyl pyrophosphate synthetase OS=Thermopla... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885158 ID=CV885158; Name=CV885158; organism=Citrus sinensis; type=EST; length=943bp
GTAATACATTCCATATGGTTTTATTTTGAAAAGTCACCTTTCATGGGGTT
TGTGGTAGCATATTATCCCATTAAGAATCTAACCGACCACGCAAACATAA
AGGACAGCATTTGCAGATGCTTATCTGTTTGAGCTTCCACCAAAACTCAC
CATGATGTGAACCTAGGAGCAGAAATCACACGATGTTGTTCAGATAGTAT
ATGGTTCTAGGGGGCAAAGGATACTAGAGCTGCTTCTTCTTCTTTTCCAA
ATAGGCGTGGTGTCGTTGAAAGTTCAAGATAGCCCAGATCAAGTGCCGCA
AACCAATTTCTGGCCACAGTGCTTCTGGGGCATACAACATGCAGTTGCTG
CTCTGCCAAAGAAGGAAATTGCTCAGGCGGTTCTCGCCAGAAGTTCGGAT
GAGGATGTCAGGATCTGGATATACACCCATGTACATATGCTTCTCAAGAT
CTACAAGCTTAATAGTATTTTTCTCCTTATTTTTATGCTCATCAGCATCT
TCAGTAACATCATTTTGAGGATTACGTGGCTTAAATGCTTGGGGCTGGGT
TTTCTTTGTAACGAGGCAGGTTTCTTCAACAGTATGGACGATCTCCTCAG
TGGAACTATATGCCAGGCAGATTAGAATCACGATCCTGGTGTTTTTGGAA
GTAGCTCTCATCACTTTTTCAGCTGCAACCCTAATAGGCTCACTCACTAG
TCCTAAGTTGCCTATGAAACATACTCTGACACCATATTTACTAAGAAAAC
CATCTTCCCGAAGCAGCAACTCCATCTTTTCCAACATTAGATCCATCAAA
TATCGAATCTCGTTTTGCGTTCGTTTGAAATTATCTATACTGAAGGCGTA
GATAGAGACATACTTCACACTCAATTCGACGCAGTACTTCAACAGGGACA
TGAGGGTCAAAAATCCAGCCCTGTGACCAGCCCCCTCTCCTGC
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