CV885158

Overview
NameCV885158
Unique NameCV885158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length943
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885158_ssr233 microsatellite CV885158_ssr233:233..244. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS2_ANASP (Undecaprenyl pyrophosphate synthetase 2 OS=Anabaena sp. (strain PCC 7120) GN=uppS2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.453e-20
Identity = 65/223 (29.15%), Postives = 105/223 (47.09%), Query Frame = -1
Query:  263 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 931
            AGHR G  TL  LL+ C +  +K ++ YAFS +N++R   E+ +              +   + + GVR+ FIG+L  + + ++   E+ M  T  N  I   + + Y S  EI     +   + +            Q  ++ DA          +    +E+H+Y      PD+LIRTSGE RLSNFLLWQ +   +Y  + LWP+        A+L++Q+
Sbjct:   47 AGHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLMLLFERLLRRELSQ---MHREGVRISFIGDLTALPKSLQTEMERSMTETLNNQAIHFTVAVNYGSRNEITRACRQVAELVQ------------QGKLSADA----------VNEGIVEQHLYTTDTQPPDLLIRTSGEMRLSNFLLWQMAYTEMYFTDILWPDFDREAFHQALLSYQK 244          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_GLOVI (Undecaprenyl pyrophosphate synthetase OS=Gloeobacter violaceus GN=uppS PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.898e-20
Identity = 68/221 (30.77%), Postives = 104/221 (47.06%), Query Frame = -1
Query:  266 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 928
            GH+AG   L  LL+ C +  +  +++YAFS +N+KR Q E+ +              E   +   GVR+ F+G L  +   ++ A E  M AT  NT +   +   Y   +EIV+   E   + ++ +     P        E  DE         KL    +H+Y     DPD+LIRTSGE RLSN+LLWQ +   +Y  + LWP+        A+ ++Q
Sbjct:   45 GHQAGVSALKELLRCCKDWGIGALTVYAFSTENWKRPQYEVEFLMALFEKVLNHELSE---MVDEGVRIRFVGALAHLPGALQSAIEGAMAATEANTAVEFTVATNYGGRQEIVNACRE---LAEQVRSGRLLP--------EQIDE---------KL--FAQHLYTRELSDPDLLIRTSGEQRLSNYLLWQMAYTEIYVADVLWPDFDRAAFHAALQSYQ 240          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_PYRFU (Undecaprenyl pyrophosphate synthetase OS=Pyrococcus furiosus GN=uppS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.479e-20
Identity = 66/222 (29.73%), Postives = 109/222 (49.10%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GH  G   L  ++++C EL ++ +++YAFS +NFKR++ E+                 D  + +YG+RV  +G   L+ + +R AAE+  R T K     + I LAY    EIV  +++                   NDV E   + ++  +  ++     K++Y+   PDPDI+IRT GE R+SNFLL+Q +   L+  +  +PE      +  I  FQ+
Sbjct:   59 GHFFGSKKLEEIVEWCHELGIRILTVYAFSTENFKRSKEEVD-RLMKLFEEKFRELVTDRRVHEYGIRVNVMGRKELLPKNVREAAEEAERVTRKYNNYFLNIALAYGGRSEIVDAIKDIV-----------------NDVLEGRLKLEDINEEIVR-----KYLYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREFQK 257          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_METJA (Undecaprenyl pyrophosphate synthetase OS=Methanocaldococcus jannaschii GN=uppS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.523e-20
Identity = 65/224 (29.02%), Postives = 112/224 (50.00%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMG--VYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GH  G   +  +L++  +L +  V++YAFS +NF+R + E+                +D  + +Y VRV  IG + L+ + ++ A +     T    +  + I +AY   +EI+  V++   + +K +    +P        ED D+         +L+D  KH+Y     +P+PD++IRTSGE R+SNFL+WQSS   LY  +  WP       + A+ ++QR
Sbjct:   73 GHYLGAEKVREVLRWARDLGINVVTLYAFSTENFRRPKEEVD-KLMELFEKKFYEIADDEEIHRYEVRVRAIGRINLLPKNVQKAIKYAEERTKNYNKFFVNIAIAYGGQQEIIDAVKK---IAEKVKRGEIEP--------EDIDK---------ELID--KHLYTANLPFPNPDLIIRTSGEERISNFLIWQSSYSELYFCDIYWPLFRRVDFLRAVRDYQR 273          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_ANAVT (Undecaprenyl pyrophosphate synthetase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=uppS PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 7.213e-20
Identity = 62/222 (27.93%), Postives = 99/222 (44.59%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GH+ G   L  LL+ C +  ++ ++ YAFS +N+KR Q E+ +              E   + +  V++ F+GNL  +   ++    + M AT  N  I   +   Y   +EI+        + +K Q    +P     +V                    E+H+Y     DPD+LIRTSGE RLSNFLLWQ +   +Y  + LWP+        A+  +Q+
Sbjct:   45 GHKRGVDALKDLLRCCRDWGIQALTAYAFSTENWKRPQEEVEFLMTLFQRVLRQELRE---MVEENVQIQFVGNLAALPRSLQAEISRSMEATKNNRGIRFSVATNYGGRQEILQACRA---IAQKVQQGLLQPDEIDEEV-------------------FERHLYTAGIADPDLLIRTSGEMRLSNFLLWQMAYGEIYITDTLWPDFDRTEFHRALCAYQQ 241          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_STAHJ (Undecaprenyl pyrophosphate synthetase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=uppS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.230e-19
Identity = 65/207 (31.40%), Postives = 101/207 (48.79%), Query Frame = -1
Query:  308 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPE 928
            GH  G  T+ ++ +   +L +KY+++YAFS +N+ R +NE+ Y              E   L +  V++  IG L  V +    A E     T  NT + ++  + Y    EIV +++    +  + Q      RN Q+  ++D DE             + KH+    YPDP++LIRTSGE R+SNFL+WQSS       E LWP+
Sbjct:   49 GHYEGMQTIKTVTREASDLGIKYLTLYAFSTENWSRPENEVNYIMNLPVNFLKTFLPE---LIEKNVQIETIGFLDAVPKSTIEAIEHAKEKTKNNTGLKLIFAINYGGRAEIVQSMKS---IYDELQ------RNGQD--SKDIDESM-----------INKHLMTHSYPDPELLIRTSGEQRISNFLIWQSSYSEFIFNEKLWPD 230          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: SRT1_YEAST (Putative dehydrodolichyl diphosphate synthetase OS=Saccharomyces cerevisiae GN=SRT1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.230e-19
Identity = 70/230 (30.43%), Postives = 103/230 (44.78%), Query Frame = -1
Query:  269 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSK--------YGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDP-DILIRTSGENRLSNFLLWQ-SSNCMLYAPEALWPEIGLRHLIWAILNF 928
            GH AG LTL++LL  C  L VK VS YAFSI+NF R + E+                 D F  +        YG ++  +G+  L+S  +R   +KV   T       + IC  Y+S  +++HT+                      D  ED  E+K+   N  K  +    MYMG + +  ++LIRTSG  RLS+++LWQ   N  +   + LWP      +   IL +
Sbjct:   91 GHEAGGLTLLTLLYICKRLGVKCVSAYAFSIENFNRPKEEV------DTLMNLFTVKLDEFAKRAKDYKDPLYGSKIRIVGDQSLLSPEMRKKIKKVEEITQDGDDFTLFICFPYTSRNDMLHTI---------------------RDSVEDHLENKSPRINIRKFTN---KMYMGFHSNKCELLIRTSGHRRLSDYMLWQVHENATIEFSDTLWPNFSFFAMYLMILKW 290          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_CLOTE (Undecaprenyl pyrophosphate synthetase OS=Clostridium tetani GN=uppS PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.099e-19
Identity = 63/224 (28.12%), Postives = 103/224 (45.98%), Query Frame = -1
Query:  257 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQRHH 928
            GH+AG  T+  ++K C  + V+Y+++YAFS +N+KR + EI                E   L +  V V  IG++  + +       K    T  NT +V+ + L Y   +EI+  ++   L+ K  + +     N   D+                   L+ ++Y    PDPD++IR SGE R+SNFLLWQ +    +     WP+    HL  AI ++Q  +
Sbjct:   51 GHKAGVETIRDIVKECNNIGVRYLTLYAFSTENWKRPKEEINALMELLVNYLRKEVAE---LHQNNVVVNTIGDVSKLPKACEDELMKAYNKTKNNTGLVLNLALNYGGRDEIIRAIK---LMYKDIEKKGLDIENVNEDL-------------------LKNYLYTKGMPDPDLIIRPSGEQRISNFLLWQCAYSEFWYSNIKWPDFKKHHLHKAIKDYQNRN 249          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_STRT2 (Undecaprenyl pyrophosphate synthetase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=uppS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.741e-19
Identity = 68/224 (30.36%), Postives = 104/224 (46.43%), Query Frame = -1
Query:  257 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQRHH 928
            GH+AG   L  +     +L VK +++YAFS +N+ R Q+E+++              E   L K  VR+  IG+   + +    A EK +  T  N+ +++   L Y    EIV  V+    + K+ +    +P     D+         K   T KL  L        Y DPD++IRTSGE RLSNFL WQS+    Y  +  WP+   + L  AI ++ + H
Sbjct:   41 GHKAGMDALQKVTIEASQLGVKVLTVYAFSTENWSRPQDEVKFIMNLPVEFFNKYVPE---LDKNNVRILTIGDNSRLPKETLDALEKAVEQTKHNSGLILNFALNYGGRAEIVSAVQA---IAKEVEIGRLRPEAIDEDLIA-------KHLMTDKLPYL--------YRDPDLIIRTSGELRLSNFLPWQSAYSEFYFTDVFWPDFDQQGLHQAISDYNKRH 243          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_STRT1 (Undecaprenyl pyrophosphate synthetase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=uppS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.741e-19
Identity = 68/224 (30.36%), Postives = 104/224 (46.43%), Query Frame = -1
Query:  257 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQRHH 928
            GH+AG   L  +     +L VK +++YAFS +N+ R Q+E+++              E   L K  VR+  IG+   + +    A EK +  T  N+ +++   L Y    EIV  V+    + K+ +    +P     D+         K   T KL  L        Y DPD++IRTSGE RLSNFL WQS+    Y  +  WP+   + L  AI ++ + H
Sbjct:   41 GHKAGMDALQKVTIEASQLGVKVLTVYAFSTENWSRPQDEVKFIMNLPVEFFNKYVPE---LDKNNVRILTIGDNSRLPKETLDALEKAVEQTKHNSGLILNFALNYGGRAEIVSAVQA---IAKEVEIGRLRPEAIDEDLIA-------KHLMTDKLPYL--------YRDPDLIIRTSGELRLSNFLPWQSAYSEFYFTDVFWPDFDQQGLHQAISDYNKRH 243          
The following BLAST results are available for this feature:
BLAST of CV885158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
UPPS2_ANASP1.453e-2029.15Undecaprenyl pyrophosphate synthetase 2 OS=Anabaen... [more]
UPPS_GLOVI1.898e-2030.77Undecaprenyl pyrophosphate synthetase OS=Gloeobact... [more]
UPPS_PYRFU2.479e-2029.73Undecaprenyl pyrophosphate synthetase OS=Pyrococcu... [more]
UPPS_METJA5.523e-2029.02Undecaprenyl pyrophosphate synthetase OS=Methanoca... [more]
UPPS_ANAVT7.213e-2027.93Undecaprenyl pyrophosphate synthetase OS=Anabaena ... [more]
UPPS_STAHJ1.230e-1931.40Undecaprenyl pyrophosphate synthetase OS=Staphyloc... [more]
SRT1_YEAST1.230e-1930.43Putative dehydrodolichyl diphosphate synthetase OS... [more]
UPPS_CLOTE2.099e-1928.13Undecaprenyl pyrophosphate synthetase OS=Clostridi... [more]
UPPS_STRT22.741e-1930.36Undecaprenyl pyrophosphate synthetase OS=Streptoco... [more]
UPPS_STRT12.741e-1930.36Undecaprenyl pyrophosphate synthetase OS=Streptoco... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885158 ID=CV885158; Name=CV885158; organism=Citrus sinensis; type=EST; length=943bp
GTAATACATTCCATATGGTTTTATTTTGAAAAGTCACCTTTCATGGGGTT
TGTGGTAGCATATTATCCCATTAAGAATCTAACCGACCACGCAAACATAA
AGGACAGCATTTGCAGATGCTTATCTGTTTGAGCTTCCACCAAAACTCAC
CATGATGTGAACCTAGGAGCAGAAATCACACGATGTTGTTCAGATAGTAT
ATGGTTCTAGGGGGCAAAGGATACTAGAGCTGCTTCTTCTTCTTTTCCAA
ATAGGCGTGGTGTCGTTGAAAGTTCAAGATAGCCCAGATCAAGTGCCGCA
AACCAATTTCTGGCCACAGTGCTTCTGGGGCATACAACATGCAGTTGCTG
CTCTGCCAAAGAAGGAAATTGCTCAGGCGGTTCTCGCCAGAAGTTCGGAT
GAGGATGTCAGGATCTGGATATACACCCATGTACATATGCTTCTCAAGAT
CTACAAGCTTAATAGTATTTTTCTCCTTATTTTTATGCTCATCAGCATCT
TCAGTAACATCATTTTGAGGATTACGTGGCTTAAATGCTTGGGGCTGGGT
TTTCTTTGTAACGAGGCAGGTTTCTTCAACAGTATGGACGATCTCCTCAG
TGGAACTATATGCCAGGCAGATTAGAATCACGATCCTGGTGTTTTTGGAA
GTAGCTCTCATCACTTTTTCAGCTGCAACCCTAATAGGCTCACTCACTAG
TCCTAAGTTGCCTATGAAACATACTCTGACACCATATTTACTAAGAAAAC
CATCTTCCCGAAGCAGCAACTCCATCTTTTCCAACATTAGATCCATCAAA
TATCGAATCTCGTTTTGCGTTCGTTTGAAATTATCTATACTGAAGGCGTA
GATAGAGACATACTTCACACTCAATTCGACGCAGTACTTCAACAGGGACA
TGAGGGTCAAAAATCCAGCCCTGTGACCAGCCCCCTCTCCTGC
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