CV885158

Overview
NameCV885158
Unique NameCV885158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length943
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885158_ssr233 microsatellite CV885158_ssr233:233..244. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_NEIMB (Undecaprenyl pyrophosphate synthetase OS=Neisseria meningitidis serogroup B GN=uppS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.741e-19
Identity = 59/222 (26.58%), Postives = 107/222 (48.20%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GH+ G   L +++K+C +L V+Y++++AFS +N++R ++E+ +                  L +  +R+  +G+    +  I    E+    T+ NT + + I   Y    +I+    +  L+ +             +++TED                L KH+ +G  P+PD+ IRT GE R+SNFLLWQ +   LY  + LWP+   + L  A+ +FQ+
Sbjct:   39 GHKRGLDALENMVKHCAKLGVQYLTVFAFSTENWRRPEDEVSFLMGLFLQALQKQVRR---LHENNMRLKILGSRERFNRQILQGIEEAEALTANNTGLTLSIAADYGGRWDILQAANK--LIAEGV-----------SEITEDT---------------LAKHLMLGDAPEPDLFIRTGGETRISNFLLWQMAYAELYFTDILWPDFDGKALDDAVASFQK 229          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_PICTO (Undecaprenyl pyrophosphate synthetase OS=Picrophilus torridus GN=uppS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.580e-19
Identity = 62/224 (27.68%), Postives = 105/224 (46.88%), Query Frame = -1
Query:  266 EGAGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 937
            E  GH  G   L  +L + +E+ +  V++YAFS +NFKR  +E+ +               D  + K G+RV  IG++  + + ++   ++V   T+K       + + Y   +EI+  +++                     + +D    K K  N I       ++Y    PDPD+++RTSGE R+SNFLLWQS+   LY  +  WPE+     + AI ++Q
Sbjct:   47 ENEGHVKGKEKLEEVLNWSMEVGIHMVTVYAFSTENFKRKSDEVNFLFNLINDAFIDLLN-DERVYKNGIRVKVIGDISKLPDYLKETIKRVEGETNKFKNFRFNLAIGYGGRQEIIDAIKK---------------------IGQDILNGKIKVDN-INEEMFRSYLYDKTLPDPDLILRTSGEERISNFLLWQSAYSELYFADVNWPELRKIDFLRAIYSYQ 247          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_NEIG1 (Undecaprenyl pyrophosphate synthetase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=uppS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.580e-19
Identity = 59/222 (26.58%), Postives = 106/222 (47.75%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GH+ G   L +++K+C +L V+Y++++AFS +N++R ++E+ +                  L +  +R+  +G+    +  I    E+    T+ NT + + I   Y    +I+    +  L+ +             +++TED                L KH+ +G  P+PD+ IRT GE R+SNFLLWQ +   LY  + LWP+     L  A+ +FQ+
Sbjct:   39 GHKRGLDALENMVKHCAKLGVQYLTVFAFSTENWRRPEDEVSFLMGLFLQALQKQVRR---LHENNMRLKILGSRERFNRQILQGIEEAEALTANNTGLTLSIAADYGGRWDILQAANK--LIAEGV-----------SEITEDT---------------LAKHLMLGDAPEPDLFIRTGGETRISNFLLWQMAYAELYFTDILWPDFDETALDAAVASFQK 229          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS1_ANASP (Undecaprenyl pyrophosphate synthetase 1 OS=Anabaena sp. (strain PCC 7120) GN=uppS1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.580e-19
Identity = 61/222 (27.48%), Postives = 101/222 (45.50%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GH+ G   L  LL+ C +  ++ ++ YAFS +N+KR Q E+ +              E   + +  V++ F+GNL  +   ++    + M  T  N  I   +   Y   +EI+        + +K Q    +P    +++ E+                 E+H+Y     DPD+LIRTSGE RLSNFLLWQ +   +Y  + LWP+        A+  +Q+
Sbjct:   45 GHKRGVDALKDLLRCCRDWGIQALTAYAFSTENWKRPQEEVEFLMTLFQRVLRQELRE---MVEENVQIQFVGNLTALPRSLQAEISRSMEETKNNRGIRFSVATNYGGRQEILQACRA---IAQKVQQGLLQP----DEINEEV---------------FERHLYTAGISDPDLLIRTSGEMRLSNFLLWQMAYGEIYITDTLWPDFDRTEFHRALCAYQQ 241          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: DDPS2_ARATH (Dehydrodolichyl diphosphate synthase 2 OS=Arabidopsis thaliana GN=At5g58770 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.580e-19
Identity = 61/222 (27.48%), Postives = 106/222 (47.75%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GHRAG   L  +++ C +  ++ ++++AFS DN+ R + EI +                  L+K  VR+  IG+   + + +     +V   T  NTR+ +++ + YS   +++          K  + +            E+ DE         +L++ E       +P PD+LIRTSGE R+SNFLLWQ +   L+  + LWP+ G    I A+++FQ+
Sbjct:  102 GHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRPRIEIDFLFSLFERSLKTEFQN---LAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNNTRLQLIVAVGYSGKYDVLQACRGIARRVKDGEIEV-----------EEIDE---------RLIEEELETNCTEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEALMSFQQ 300          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_STRMU (Undecaprenyl pyrophosphate synthetase OS=Streptococcus mutans GN=uppS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.675e-19
Identity = 69/224 (30.80%), Postives = 99/224 (44.20%), Query Frame = -1
Query:  257 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQRHH 928
            GH+AG   L  +     EL VK +++YAFS +N+ R Q E+++              +   L K  VR+  IG+   +      A E+    T  N+ +++   L Y    EIV  V+   L+ +      F P     D+TE          N   L           Y DPD++IRTSGE RLSNFL WQ++   LY  + LWP+   + L  AI  F   H
Sbjct:   41 GHKAGMDALQDVTIAASELGVKILTVYAFSTENWARPQEEVKFIMNLPVEFFDKYVPK---LHKNNVRILVIGDKEELPAATLDALERARELTKHNSGLILNFALNYGGRAEIVDAVK---LIAQDVLDARFNP----GDITEGLIADYLMTSNLPYL-----------YRDPDLIIRTSGELRLSNFLPWQAAYSELYFTDTLWPDFDKKALYLAIEEFNHRH 243          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_STAS1 (Undecaprenyl pyrophosphate synthetase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=uppS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.675e-19
Identity = 64/221 (28.96%), Postives = 98/221 (44.34%), Query Frame = -1
Query:  266 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 928
            GH  G  T+  + K   ++ +KY+++YAFS +N+ R +NE+ Y              E   L +  V+V  IG +  +      A  K    T  NT + ++  + Y    EI+++V       K    +        +D+TE                 ++ H+    YPDPD+LIRTSGE R+SNFL+WQ S       E LWP+     LI  I  +Q
Sbjct:   50 GHYQGMQTVKKITKVASDIGIKYLTLYAFSTENWTRPENEVNYIMNLPVNFLKTFLPE---LIENNVKVETIGFMEYLPSSTLKAIAKAKEDTKDNTGLKLIFAINYGGRAEILNSV-------KTIYDELTAKGLTSDDITEQM---------------IDDHLMTHAYPDPDLLIRTSGEQRISNFLIWQVSYSEFIFNEKLWPDFDKEELINCIKIYQ 245          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_CLOAB (Undecaprenyl pyrophosphate synthetase OS=Clostridium acetobutylicum GN=uppS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.675e-19
Identity = 64/223 (28.70%), Postives = 103/223 (46.19%), Query Frame = -1
Query:  266 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLE--KHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 928
            GH+AG   L  +++ C ++ VKY+++Y FS +N+ R + E+                E   L+K  V +  IGN+  + E    A       T  NT +++ + L Y   +EI++ V+                     ++    +E+K  +     L D E   ++Y G  PDPDI+IR SGE RLSNFLLWQ +    +     WP+  +  L  AI ++Q
Sbjct:   49 GHKAGGEALKRIVRECSDIGVKYLTVYGFSTENWIRPKEEVNAIMRLIVEFLKREFNE---LNKNNVIINPIGNILGLPEACITALNDAKNKTKNNTGLMLNLALNYGGRDEILNAVK---------------------NIFASYEENKISKDEIFNLSDEEFSSYLYTGCIPDPDIIIRPSGEKRLSNFLLWQCAYSEFWYSNINWPDFSIEDLHTAIKDYQ 247          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS2_TROW8 (Undecaprenyl pyrophosphate synthetase 2 OS=Tropheryma whipplei (strain TW08/27) GN=uppS2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.975e-19
Identity = 63/218 (28.90%), Postives = 101/218 (46.33%), Query Frame = -1
Query:  275 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAIL 928
            GH+AG   L+ ++   V++ V Y+S+Y FS +N+ R  +E+R+                   + +GVRV + G    + + +          T KNT + + +CL Y S +EIV+ ++                    +DV       K+  +  I      + MYM  +PD D+ +R+SGENR+SNF+LWQS+   L     LWP+   R   WA L
Sbjct:   46 GHKAGESALIDVVAGAVQVGVPYLSLYVFSTENWLRAPDEVRFLLRFTRDVIARRRE---LFAHWGVRVRWSGVPNRLGKVLVKELRDTEEITKKNTAMNLNVCLNYGSRQEIVNAIKSIV-----------------SDVNSGLISAKSVNEKIIS-----RRMYMPDFPDVDLFLRSSGENRMSNFMLWQSAYAELIFMSKLWPDF-RRDDFWAAL 237          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS1_TROWT (Undecaprenyl pyrophosphate synthetase 1 OS=Tropheryma whipplei (strain Twist) GN=uppS1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.975e-19
Identity = 63/218 (28.90%), Postives = 101/218 (46.33%), Query Frame = -1
Query:  275 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAIL 928
            GH+AG   L+ ++   V++ V Y+S+Y FS +N+ R  +E+R+                   + +GVRV + G    + + +          T KNT + + +CL Y S +EIV+ ++                    +DV       K+  +  I      + MYM  +PD D+ +R+SGENR+SNF+LWQS+   L     LWP+   R   WA L
Sbjct:   46 GHKAGESALIDVVAGAVQVGVPYLSLYVFSTENWLRAPDEVRFLLRFTRDVIARRRE---LFAHWGVRVRWSGVPNRLGKVLVKELRDTEEITKKNTAMNLNVCLNYGSRQEIVNAIKSIV-----------------SDVNSGLISAKSVNEKIIS-----RRMYMPDFPDVDLFLRSSGENRMSNFMLWQSAYAELIFMSKLWPDF-RRDDFWAAL 237          
The following BLAST results are available for this feature:
BLAST of CV885158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
UPPS_NEIMB2.741e-1926.58Undecaprenyl pyrophosphate synthetase OS=Neisseria... [more]
UPPS_PICTO3.580e-1927.68Undecaprenyl pyrophosphate synthetase OS=Picrophil... [more]
UPPS_NEIG13.580e-1926.58Undecaprenyl pyrophosphate synthetase OS=Neisseria... [more]
UPPS1_ANASP3.580e-1927.48Undecaprenyl pyrophosphate synthetase 1 OS=Anabaen... [more]
DDPS2_ARATH3.580e-1927.48Dehydrodolichyl diphosphate synthase 2 OS=Arabidop... [more]
UPPS_STRMU4.675e-1930.80Undecaprenyl pyrophosphate synthetase OS=Streptoco... [more]
UPPS_STAS14.675e-1928.96Undecaprenyl pyrophosphate synthetase OS=Staphyloc... [more]
UPPS_CLOAB4.675e-1928.70Undecaprenyl pyrophosphate synthetase OS=Clostridi... [more]
UPPS2_TROW87.975e-1928.90Undecaprenyl pyrophosphate synthetase 2 OS=Tropher... [more]
UPPS1_TROWT7.975e-1928.90Undecaprenyl pyrophosphate synthetase 1 OS=Tropher... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885158 ID=CV885158; Name=CV885158; organism=Citrus sinensis; type=EST; length=943bp
GTAATACATTCCATATGGTTTTATTTTGAAAAGTCACCTTTCATGGGGTT
TGTGGTAGCATATTATCCCATTAAGAATCTAACCGACCACGCAAACATAA
AGGACAGCATTTGCAGATGCTTATCTGTTTGAGCTTCCACCAAAACTCAC
CATGATGTGAACCTAGGAGCAGAAATCACACGATGTTGTTCAGATAGTAT
ATGGTTCTAGGGGGCAAAGGATACTAGAGCTGCTTCTTCTTCTTTTCCAA
ATAGGCGTGGTGTCGTTGAAAGTTCAAGATAGCCCAGATCAAGTGCCGCA
AACCAATTTCTGGCCACAGTGCTTCTGGGGCATACAACATGCAGTTGCTG
CTCTGCCAAAGAAGGAAATTGCTCAGGCGGTTCTCGCCAGAAGTTCGGAT
GAGGATGTCAGGATCTGGATATACACCCATGTACATATGCTTCTCAAGAT
CTACAAGCTTAATAGTATTTTTCTCCTTATTTTTATGCTCATCAGCATCT
TCAGTAACATCATTTTGAGGATTACGTGGCTTAAATGCTTGGGGCTGGGT
TTTCTTTGTAACGAGGCAGGTTTCTTCAACAGTATGGACGATCTCCTCAG
TGGAACTATATGCCAGGCAGATTAGAATCACGATCCTGGTGTTTTTGGAA
GTAGCTCTCATCACTTTTTCAGCTGCAACCCTAATAGGCTCACTCACTAG
TCCTAAGTTGCCTATGAAACATACTCTGACACCATATTTACTAAGAAAAC
CATCTTCCCGAAGCAGCAACTCCATCTTTTCCAACATTAGATCCATCAAA
TATCGAATCTCGTTTTGCGTTCGTTTGAAATTATCTATACTGAAGGCGTA
GATAGAGACATACTTCACACTCAATTCGACGCAGTACTTCAACAGGGACA
TGAGGGTCAAAAATCCAGCCCTGTGACCAGCCCCCTCTCCTGC
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