CV885158

Overview
NameCV885158
Unique NameCV885158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length943
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS1_CORGL (Undecaprenyl pyrophosphate synthetase 1 OS=Corynebacterium glutamicum GN=uppS1 PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.042e-18
Identity = 57/224 (25.45%), Postives = 103/224 (45.98%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEK--NTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GHR G   +  ++++C ++ V  V++Y  S++N  R+  E++                +        RV  +G+L L+ +P+     K   AT  NT I + + + Y   +EIV  V++   + K                    DE  + ++   ++K+  +  H+Y    PDPD++IRTSGE RLS F+LWQS+   ++  +  WP       + AI ++ +
Sbjct:   20 GHRVGAKKIGEMVRWCDDVDVNLVTVYLLSMENLGRSSEELQLLFDIIADVADELARPET-----NCRVRLVGHLDLLPDPVACRLRKAEEATVNNTGIAVNMAVGYGGRQEIVDAVQKLLTIGK--------------------DEGLSVDELIESVKVDAISTHLYTSGQPDPDLVIRTSGEQRLSGFMLWQSAYSEIWFTDTYWPAFRRIDFLRAIRDYSQ 218          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_NEIMA (Undecaprenyl pyrophosphate synthetase OS=Neisseria meningitidis serogroup A GN=uppS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.360e-18
Identity = 58/222 (26.13%), Postives = 107/222 (48.20%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GH+ G   L +++K+C +L V+Y++++AFS +N++R ++E+ +                  L +  +R+  +G+    +  I    E+    T+ NT + + I   Y    +I+    +  L+ +             +++TED                L K++ +G  P+PD+ IRT GE R+SNFLLWQ +   LY  + LWP+   + L  A+ +FQ+
Sbjct:   39 GHKRGLDALENMVKHCAKLGVQYLTVFAFSTENWRRPEDEVSFLMGLFLQALQKQVRR---LHENNMRLKILGSRERFNRQILKGIEEAEALTANNTGLTLSIAADYGGRWDILQAANK--LIAEGV-----------SEITEDT---------------LAKYLMLGDAPEPDLFIRTGGETRISNFLLWQMAYAELYFTDILWPDFDGKALDDAVASFQK 229          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_THEMA (Undecaprenyl pyrophosphate synthetase OS=Thermotoga maritima GN=uppS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.777e-18
Identity = 62/222 (27.93%), Postives = 106/222 (47.75%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GH+ G   L + +K+ +EL +KY++ ++FS +N+KR + E+ +                  L +  VRV  +G    + E +    ++V   T +  R+ ++I   Y    EI+  VE    + K            + ++TE+                  +++Y+   PDPD++IRTSGE RLSNFLLWQS+   LY  + LWP+   R  + AI ++ +
Sbjct:   28 GHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDREME---LLRRERVRVRILGRKEGLPEKVLKKWQEVEEKTKEFDRMTLIIAFNYGGRREILDAVE---FILKDVS------HGKKIELTEET---------------FRQYLYLPDVPDPDLIIRTSGEMRLSNFLLWQSAYSELYFFKKLWPDFTKRDFLRAIESYSK 222          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_SYNY3 (Undecaprenyl pyrophosphate synthetase OS=Synechocystis sp. (strain PCC 6803) GN=uppS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.777e-18
Identity = 61/224 (27.23%), Postives = 99/224 (44.20%), Query Frame = -1
Query:  257 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQRHH 928
            GH+ G  +L +LL+ C +  +  ++ YAFS +N+ R   E+ +              E   +    VR+ F+GNL  +   ++    + M  T  NT I   +   Y   +EIVH  +    + ++ Q     P      V                   +EK++Y      PD+LIRTSGE R+SNFLLWQ +   +Y    LWP+   +    A+ ++Q+ H
Sbjct:   45 GHQRGVDSLKNLLRCCDDWGIAALTAYAFSTENWGRPLEEVEFLMTLFERVLRRELKE---MMAENVRIRFVGNLTSLPRSLQDEIARSMEDTKNNTGIRFTVATNYGGRQEIVHVCQA---IAREVQSGKLDPETIDEGV-------------------VEKYLYTEGLSHPDLLIRTSGELRISNFLLWQMAYAEIYVTSTLWPDFDRQAFHLALRDYQQRH 243          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_PORGI (Undecaprenyl pyrophosphate synthetase OS=Porphyromonas gingivalis GN=uppS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.320e-18
Identity = 57/207 (27.54%), Postives = 96/207 (46.38%), Query Frame = -1
Query:  308 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPE 928
            GH AG   L   L+      V+Y++ Y FS +N+ R + E+R               +   L    +R+  IG+   + E +R + EK +R T+ NT + +++ L+YSS  E+   +     + +K +  + +P +   D+  D                   H+     PDPD+ IRT GE R+SNFL+WQ +   L+  + LWP+
Sbjct:   39 GHAAGVDALRVALRAAAGCGVEYLTAYTFSTENWNRPEEEVRALMGLFVTAIMNEMLD---LMTNNIRLLAIGDFSRLPEDVRESLEKGIRETAGNTGLTLVLALSYSSRWEMTDVIRR---LARKVRDGSVEPEDINVDLVSD-------------------HLSTAGIPDPDLFIRTGGEKRISNFLMWQMAYTELFFTDTLWPD 220          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_BACTN (Undecaprenyl pyrophosphate synthetase OS=Bacteroides thetaiotaomicron GN=uppS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.320e-18
Identity = 61/222 (27.48%), Postives = 103/222 (46.40%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GH+AG  T+  +++    L VKY+++Y FS +N+ R Q E+                E+  L K  +R   IG++  +   ++    + +  T+ NT   +++ L+YSS  E+   V +   + K  +       +P+    +  DE+            +  H+     PDPD+LIRT GE RLSN+LLWQ +   LY  +  WP+        AI  +Q+
Sbjct:   37 GHQAGAETVHKIIEDAARLGVKYLTLYTFSTENWNRPQEEVA-----ALMNLLVDSIEEETLMKNNIRFRIIGDIKKLPAEVQEGLSRCIEHTANNTGTCLVLALSYSSRWEMTEAVRQIATLAKTGEI------SPE----QITDEY------------ITAHLTTNFMPDPDLLIRTGGEIRLSNYLLWQCAYSELYFCDTFWPDFDKEEFCKAIYEYQQ 231          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_CHLTR (Undecaprenyl pyrophosphate synthetase OS=Chlamydia trachomatis GN=uppS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.030e-18
Identity = 61/225 (27.11%), Postives = 109/225 (48.44%), Query Frame = -1
Query:  263 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETC--LVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 931
            +GHR G  ++  ++   + L V+ ++++AFS +NF R+++E+                   FL    +R+  IG+L  + + ++   E+   AT+  +R+ ++  + Y S +E+V   +E    L +KK            ND++E+                +  ++     PDPD+LIRT GE R+SNFLLWQ +   LY  + LWP+     L+ AI  +Q+
Sbjct:   49 SGHRQGADSIPQIVDTALHLGVEALTLFAFSTENFSRSKSEVAELFSLFNSQLRSKL---SFLHDREIRLRCIGDLSKLPQELQNNIEQASSATAHYSRMELIFAINYGSKDELVRAFKELHQDLASKKISV---------NDISEEL---------------ISSYLDTSGLPDPDLLIRTGGEMRVSNFLLWQIAYTELYVTDVLWPDFTANDLLEAIKTYQQ 246          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_ARCFU (Undecaprenyl pyrophosphate synthetase OS=Archaeoglobus fulgidus GN=uppS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.030e-18
Identity = 66/222 (29.73%), Postives = 107/222 (48.20%), Query Frame = -1
Query:  266 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMY-MGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 928
            GH  G      +L++C +L VK +++YAFS +NF+R++ E +               +D    +  +RV  +G   L+ E +R   ++V   T K+ R  + + +AY   +EI+  V     + +K +    +P        E+ DE             LE+H+Y  G Y   D++IRT GE RLSNFL WQ++N + Y  +  WPE     L+ AI  +Q
Sbjct:   45 GHFFGSKKAEEVLEWCWDLGVKMLTLYAFSTENFRRSEKE-KKNIFQLLESELRRLLKDRRTYERELRVKVVGKRELLPENLRETIKEVEERTKKHRRHYLNVAVAYGGRQEIIDAVRA---ILRKVRKGEVRP--------EEIDEKM-----------LEEHLYGEGRYSKVDLIIRTGGEQRLSNFLPWQAANSVAYFCDVYWPEFRKIDLLRAIRAWQ 243          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_TREDE (Undecaprenyl pyrophosphate synthetase OS=Treponema denticola GN=uppS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.169e-18
Identity = 62/224 (27.68%), Postives = 105/224 (46.88%), Query Frame = -1
Query:  257 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQRHH 928
            GH+ G  T+  + K   +L + Y+++Y FS +N+KRT+ E+ +                 F +   +R+  IGNL  + + I+     V   TS  T   I++ + Y + +EI+  +++                     +  D     N+E  ++KL         G  P  D+LIRT GE RLSNFLLWQS+   LY  + LWP+  + +L  AI ++++ +
Sbjct:   29 GHKEGLNTVKRITKAVSDLGIPYITLYIFSTENWKRTEAEVGFLMGLIKQHLKAELK---FYADNNIRIEHIGNLSGLPQDIQDEINSVRDKTSAYTGTAIVLGINYGAHDEILRAIKK---------------------LNSDELASINEESFSLKLDT-------GKIPPVDLLIRTGGEKRLSNFLLWQSAYAELYFTDTLWPDWTVENLYEAIEDYKKRN 221          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_PROMP (Undecaprenyl pyrophosphate synthetase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=uppS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.169e-18
Identity = 58/221 (26.24%), Postives = 103/221 (46.61%), Query Frame = -1
Query:  266 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 928
            GH  G   L  ++K    +  K +++YAFS +N+ R  NE+ +              E   + +  +++ FIG+L  +   +++  +     T+ N +  + IC+ Y   +EIV   +E  +   K+     KP    +D+ E     +   K ++               DP++LIRTSGE R+SNFLLWQ +   +Y  + LWP+      + AI+++Q
Sbjct:   48 GHNKGVSVLKEIIKASKNIDCKVLTVYAFSTENWIRPSNEVDFLINLFEKVLKKEISE---IHQESIKIKFIGDLSPLPNSLKLLIKSSEALTNNNKKFTLNICVNYGGRQEIVKAAKEIAI---KSSSGKIKP----SDIDEQLFNSELLTKGSM---------------DPELLIRTSGEKRISNFLLWQLAYSEIYVTDVLWPDFTESEFLKAIIDYQ 243          
The following BLAST results are available for this feature:
BLAST of CV885158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
UPPS1_CORGL1.042e-1825.45Undecaprenyl pyrophosphate synthetase 1 OS=Coryneb... [more]
UPPS_NEIMA1.360e-1826.13Undecaprenyl pyrophosphate synthetase OS=Neisseria... [more]
UPPS_THEMA1.777e-1827.93Undecaprenyl pyrophosphate synthetase OS=Thermotog... [more]
UPPS_SYNY31.777e-1827.23Undecaprenyl pyrophosphate synthetase OS=Synechocy... [more]
UPPS_PORGI2.320e-1827.54Undecaprenyl pyrophosphate synthetase OS=Porphyrom... [more]
UPPS_BACTN2.320e-1827.48Undecaprenyl pyrophosphate synthetase OS=Bacteroid... [more]
UPPS_CHLTR3.030e-1827.11Undecaprenyl pyrophosphate synthetase OS=Chlamydia... [more]
UPPS_ARCFU3.030e-1829.73Undecaprenyl pyrophosphate synthetase OS=Archaeogl... [more]
UPPS_TREDE5.169e-1827.68Undecaprenyl pyrophosphate synthetase OS=Treponema... [more]
UPPS_PROMP5.169e-1826.24Undecaprenyl pyrophosphate synthetase OS=Prochloro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885158 ID=CV885158; Name=CV885158; organism=Citrus sinensis; type=EST; length=943bp
GTAATACATTCCATATGGTTTTATTTTGAAAAGTCACCTTTCATGGGGTT
TGTGGTAGCATATTATCCCATTAAGAATCTAACCGACCACGCAAACATAA
AGGACAGCATTTGCAGATGCTTATCTGTTTGAGCTTCCACCAAAACTCAC
CATGATGTGAACCTAGGAGCAGAAATCACACGATGTTGTTCAGATAGTAT
ATGGTTCTAGGGGGCAAAGGATACTAGAGCTGCTTCTTCTTCTTTTCCAA
ATAGGCGTGGTGTCGTTGAAAGTTCAAGATAGCCCAGATCAAGTGCCGCA
AACCAATTTCTGGCCACAGTGCTTCTGGGGCATACAACATGCAGTTGCTG
CTCTGCCAAAGAAGGAAATTGCTCAGGCGGTTCTCGCCAGAAGTTCGGAT
GAGGATGTCAGGATCTGGATATACACCCATGTACATATGCTTCTCAAGAT
CTACAAGCTTAATAGTATTTTTCTCCTTATTTTTATGCTCATCAGCATCT
TCAGTAACATCATTTTGAGGATTACGTGGCTTAAATGCTTGGGGCTGGGT
TTTCTTTGTAACGAGGCAGGTTTCTTCAACAGTATGGACGATCTCCTCAG
TGGAACTATATGCCAGGCAGATTAGAATCACGATCCTGGTGTTTTTGGAA
GTAGCTCTCATCACTTTTTCAGCTGCAACCCTAATAGGCTCACTCACTAG
TCCTAAGTTGCCTATGAAACATACTCTGACACCATATTTACTAAGAAAAC
CATCTTCCCGAAGCAGCAACTCCATCTTTTCCAACATTAGATCCATCAAA
TATCGAATCTCGTTTTGCGTTCGTTTGAAATTATCTATACTGAAGGCGTA
GATAGAGACATACTTCACACTCAATTCGACGCAGTACTTCAACAGGGACA
TGAGGGTCAAAAATCCAGCCCTGTGACCAGCCCCCTCTCCTGC
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