CV885158

Overview
NameCV885158
Unique NameCV885158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length943
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885158_ssr233 microsatellite CV885158_ssr233:233..244. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_MICLU (Undecaprenyl pyrophosphate synthetase OS=Micrococcus luteus GN=uppS PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.169e-18
Identity = 61/224 (27.23%), Postives = 105/224 (46.88%), Query Frame = -1
Query:  257 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQRHH 928
            GH  G  T+  + +Y  +L VKY+++YAFS +N+ R ++E+ Y              E   L +  V+V  IG +  + +  + A  +    T  NT + ++  L Y   +EI+  V+   L+ ++        ++ +  + E ++ H N+            +++    PDP++LIRTSGE RLSNFL+WQ S       +  WP+     L   I  +Q  H
Sbjct:   45 GHYEGMQTVKKITRYASDLGVKYLTLYAFSTENWSRPKDEVNYLMKLPGDFLNTFLPE---LIEKNVKVETIGFIDDLPDHTKKAVLEAKEKTKHNTGLTLVFALNYGGRKEIISAVQ---LIAERY-------KSGEISLDEISETHFNE------------YLFTANMPDPELLIRTSGEERLSNFLIWQCSYSEFVFIDEFWPDFNEESLAQCISIYQNRH 243          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_ENTFA (Undecaprenyl pyrophosphate synthetase OS=Enterococcus faecalis GN=uppS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.169e-18
Identity = 64/229 (27.95%), Postives = 110/229 (48.03%), Query Frame = -1
Query:  257 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYP----DPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQRHH 931
            AGH+ G  T+  + K+   L VK +++YAFS +N+KR  +E+ +              E   L K  V+V  +G    +    + A ++ +  T  NT +V+   L Y +  E++  +++   +  +   +A+      +++TE+                +  H+  G  P    DP++LIRTSGE R+SNFLLWQ +   L+  +ALWP+     L  AI +FQ  +
Sbjct:   50 AGHKEGMDTVKKITKHASHLGVKVLTLYAFSTENWKRPTDEVNFLMQLPVDFFDTFVPE---LIKENVKVNVMGYQEFLPSHTQDAVKRAIEQTKDNTGMVLNFALNYGARAELLTAMKQ---IAAEVSEKAYTA----DEITEET---------------IADHLMTGFLPTELRDPELLIRTSGEERISNFLLWQIAYSELFFTKALWPDFSGDTLETAIASFQNRN 253          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS2_STRAW (Undecaprenyl pyrophosphate synthetase 2 OS=Streptomyces avermitilis GN=uppS2 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.817e-18
Identity = 58/220 (26.36%), Postives = 98/220 (44.55%), Query Frame = -1
Query:  269 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNF 928
            GH+ G   +M +LK C+EL VK +S+YAFS +N+KR+  E+R+              E   +   G+R+ ++G +  + + +    +     T  N  + +  C+ Y    E+    +                   ++      D  K  EK       ++K++Y    PD D+ +R SGE R SN+LLWQSS   +   + LWP+   R L  A + +
Sbjct:   59 GHKVGEGVVMDVLKGCIELGVKNLSLYAFSTENWKRSPEEVRFLMNFNRDVIRRRRDE---MDALGIRIRWVGRMPKLWKSVVQELQIAQEQTKDNDAMTLYFCVNYGGRAELADAAKAMA----------------EDVAAGRLDPAKVSEKT------IQKYLYYPDMPDVDLFLRPSGEQRTSNYLLWQSSYAEMVFQDVLWPDFDRRDLWRACVEY 253          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: DDPS5_ARATH (Dehydrodolichyl diphosphate synthase 5 OS=Arabidopsis thaliana GN=At5g58784 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.152e-17
Identity = 63/226 (27.88%), Postives = 100/226 (44.25%), Query Frame = -1
Query:  263 GEGAGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 940
            G   GH AG   LM   K C  +    +S++AFS +N++R ++E++                  +L    +++  IGN   + E +    E+V  AT       ++I + YS   +I+   +      K    Q            ED +E         K ++ E       +P+PD+LIRTSGE R+SNF LWQS+   LY P  LWP+ G    + A+  +Q+
Sbjct:   91 GTSEGHEAGARRLMENAKDCFAMGTNTISLFAFSTENWERPEDEVKCLMALFEKYLASDMP---YLRSDKIKISVIGNRTKLPESLLGLIEEVEEATKSYEGKNLIIAIDYSGRYDILQACKSLANKVKDGLIQV-----------EDINE---------KAMEKELLTKCSEFPNPDLLIRTSGEQRISNFFLWQSAYTELYFPTVLWPDFGEAEYLEALTWYQQ 293          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_BUCAP (Undecaprenyl pyrophosphate synthetase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=uppS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.504e-17
Identity = 60/217 (27.65%), Postives = 105/217 (48.39%), Query Frame = -1
Query:  278 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAI 928
            GH+ GF T   ++KY VE ++K +++Y FS +N++R + EI                    L+KY +R+  IG+    +E ++    KV + T  NT +++ I   YS   +I+  +++   + K  Q           D+ +  + + ++  +T +L+ +            D++IRT GE R+SNFLLWQ +   LY  + LWP+   R    AI
Sbjct:   42 GHKEGFKTARKIIKYAVENNIKILTLYVFSRENWRRPKLEITALMKLFFFALKSEIKN---LNKYNIRLKIIGDTSPFNENLKNYIHKVEKQTFNNTGLILNIAANYSGRWDIIRGIKK---IIKDVQKDVL-------DIDQIQERNFSQYLSTSELLPV------------DLVIRTGGEKRISNFLLWQIAYSELYFTDILWPDFNWRDFQHAI 233          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_STRP8 (Undecaprenyl pyrophosphate synthetase OS=Streptococcus pyogenes serotype M18 GN=uppS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.964e-17
Identity = 65/222 (29.28%), Postives = 97/222 (43.69%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GH+AG   L  +     EL VK +++YAFS +N+ R Q+E+ +                  L +  V++  IG    + E    A    +  T +NT +++   L Y    EI   V     + +        P     D+TED           I    +  H+   +Y DPD++IRTSGE RLSNFL WQS+    Y    LWP+     L+ AI ++ R
Sbjct:   41 GHKAGMDALQEVTITASELGVKVLTVYAFSTENWSRPQDEVSFIMNLPVAFFDKYVPV---LHENNVKIQMIGETSRLPEDTLAALNAAIDKTKRNTGLILNFALNYGGRAEITSAVR---FIAQDVLDAKLNP----GDITEDL----------IANYLMTDHLPY-LYRDPDLIIRTSGELRLSNFLPWQSAYSEFYFTPVLWPDFKKAELLKAIADYNR 241          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_STRP6 (Undecaprenyl pyrophosphate synthetase OS=Streptococcus pyogenes serotype M6 GN=uppS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.964e-17
Identity = 65/222 (29.28%), Postives = 97/222 (43.69%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GH+AG   L  +     EL VK +++YAFS +N+ R Q+E+ +                  L +  V++  IG    + E    A    +  T +NT +++   L Y    EI   V     + +        P     D+TED           I    +  H+   +Y DPD++IRTSGE RLSNFL WQS+    Y    LWP+     L+ AI ++ R
Sbjct:   41 GHKAGMDALQEVTITASELGVKVLTVYAFSTENWSRPQDEVSFIMNLPVAFFDKYVPV---LHENNVKIQMIGETSRLPEDTLAALNAAIDKTKRNTGLILNFALNYGGRAEITSAVR---FIAQDVLDAKLNP----GDITEDL----------IANYLMTDHLPY-LYRDPDLIIRTSGELRLSNFLPWQSAYSEFYFTPVLWPDFKKAELLKAIADYNR 241          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_STRP1 (Undecaprenyl pyrophosphate synthetase OS=Streptococcus pyogenes serotype M1 GN=uppS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.964e-17
Identity = 65/222 (29.28%), Postives = 97/222 (43.69%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GH+AG   L  +     EL VK +++YAFS +N+ R Q+E+ +                  L +  V++  IG    + E    A    +  T +NT +++   L Y    EI   V     + +        P     D+TED           I    +  H+   +Y DPD++IRTSGE RLSNFL WQS+    Y    LWP+     L+ AI ++ R
Sbjct:   41 GHKAGMDALQEVTITASELGVKVLTVYAFSTENWSRPQDEVSFIMNLPVTFFDKYVPV---LHENNVKIQMIGETSRLPEDTLAALNAAIDKTKRNTGLILNFALNYGGRAEITSAVR---FIAQDVLDAKLNP----GDITEDL----------IANYLMTDHLPY-LYRDPDLIIRTSGELRLSNFLPWQSAYSEFYFTPVLWPDFKKAELLKAIADYNR 241          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_MYCPF (Undecaprenyl pyrophosphate synthetase OS=Mycobacterium parafortuitum GN=uppS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.964e-17
Identity = 62/220 (28.18%), Postives = 98/220 (44.55%), Query Frame = -1
Query:  281 GEGAGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWA 940
            G   GH+ G   L+ +    +E+ +K++++YAFS +N+KR+  E+R+                  L+  GVR+ ++G+   +   +    +   + T  N  I I  C+ Y    EIV    E                     + ++A + K K  N I      KH++    PD D+ IRTSGE R SNFLLWQ++       + LWP+   R L WA
Sbjct:   88 GRTEGHKMGEAVLIDITCGAIEIGIKHLTVYAFSTENWKRSTEEVRFLMGFNREVVRRRREN---LNDMGVRMRWVGSRPRMWSSVIKEFDIAEQMTVDNDVITINYCVNYGGRTEIVEAARE---------------------LAQEAVDGKIKP-NRISEAQFAKHLHRSDIPDVDLFIRTSGEQRASNFLLWQAAYAEYVFQDKLWPDYDRRDL-WA 281          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS1_STRCO (Undecaprenyl pyrophosphate synthetase 1 OS=Streptomyces coelicolor GN=uppS1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.964e-17
Identity = 60/220 (27.27%), Postives = 95/220 (43.18%), Query Frame = -1
Query:  269 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNF 928
            GH+ G   +M +L+  +E+ V  +S+YAFS +N+KR+  E+R+                  L + GVRV + G +  + + +    +     T  N R+ +  C+ Y    EI    +      +  +                 D  K  EK       L K++Y    PD D+ +R SGE R SN+LLWQS+   +   + LWP+   R L  A L F
Sbjct:   58 GHKVGAEQVMDVLQGAIEMGVGNISLYAFSTENWKRSPEEVRFLMNFNRDFIRKSRDT---LDELGVRVRWAGRMPRLWKSVAKELQVAQEQTKDNDRLTLYFCMNYGGRAEIADAAQALAEDVRAGK----------------LDPAKVNEKT------LAKYLYYPDMPDVDLFLRPSGEQRTSNYLLWQSAYAEMVFQDVLWPDFDRRDLWRACLEF 252          
The following BLAST results are available for this feature:
BLAST of CV885158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
UPPS_MICLU5.169e-1827.23Undecaprenyl pyrophosphate synthetase OS=Micrococc... [more]
UPPS_ENTFA5.169e-1827.95Undecaprenyl pyrophosphate synthetase OS=Enterococ... [more]
UPPS2_STRAW8.817e-1826.36Undecaprenyl pyrophosphate synthetase 2 OS=Strepto... [more]
DDPS5_ARATH1.152e-1727.88Dehydrodolichyl diphosphate synthase 5 OS=Arabidop... [more]
UPPS_BUCAP1.504e-1727.65Undecaprenyl pyrophosphate synthetase OS=Buchnera ... [more]
UPPS_STRP81.964e-1729.28Undecaprenyl pyrophosphate synthetase OS=Streptoco... [more]
UPPS_STRP61.964e-1729.28Undecaprenyl pyrophosphate synthetase OS=Streptoco... [more]
UPPS_STRP11.964e-1729.28Undecaprenyl pyrophosphate synthetase OS=Streptoco... [more]
UPPS_MYCPF1.964e-1728.18Undecaprenyl pyrophosphate synthetase OS=Mycobacte... [more]
UPPS1_STRCO1.964e-1727.27Undecaprenyl pyrophosphate synthetase 1 OS=Strepto... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885158 ID=CV885158; Name=CV885158; organism=Citrus sinensis; type=EST; length=943bp
GTAATACATTCCATATGGTTTTATTTTGAAAAGTCACCTTTCATGGGGTT
TGTGGTAGCATATTATCCCATTAAGAATCTAACCGACCACGCAAACATAA
AGGACAGCATTTGCAGATGCTTATCTGTTTGAGCTTCCACCAAAACTCAC
CATGATGTGAACCTAGGAGCAGAAATCACACGATGTTGTTCAGATAGTAT
ATGGTTCTAGGGGGCAAAGGATACTAGAGCTGCTTCTTCTTCTTTTCCAA
ATAGGCGTGGTGTCGTTGAAAGTTCAAGATAGCCCAGATCAAGTGCCGCA
AACCAATTTCTGGCCACAGTGCTTCTGGGGCATACAACATGCAGTTGCTG
CTCTGCCAAAGAAGGAAATTGCTCAGGCGGTTCTCGCCAGAAGTTCGGAT
GAGGATGTCAGGATCTGGATATACACCCATGTACATATGCTTCTCAAGAT
CTACAAGCTTAATAGTATTTTTCTCCTTATTTTTATGCTCATCAGCATCT
TCAGTAACATCATTTTGAGGATTACGTGGCTTAAATGCTTGGGGCTGGGT
TTTCTTTGTAACGAGGCAGGTTTCTTCAACAGTATGGACGATCTCCTCAG
TGGAACTATATGCCAGGCAGATTAGAATCACGATCCTGGTGTTTTTGGAA
GTAGCTCTCATCACTTTTTCAGCTGCAACCCTAATAGGCTCACTCACTAG
TCCTAAGTTGCCTATGAAACATACTCTGACACCATATTTACTAAGAAAAC
CATCTTCCCGAAGCAGCAACTCCATCTTTTCCAACATTAGATCCATCAAA
TATCGAATCTCGTTTTGCGTTCGTTTGAAATTATCTATACTGAAGGCGTA
GATAGAGACATACTTCACACTCAATTCGACGCAGTACTTCAACAGGGACA
TGAGGGTCAAAAATCCAGCCCTGTGACCAGCCCCCTCTCCTGC
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