CV885158

Overview
NameCV885158
Unique NameCV885158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length943
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885158_ssr233 microsatellite CV885158_ssr233:233..244. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_STRA5 (Undecaprenyl pyrophosphate synthetase OS=Streptococcus agalactiae serotype V GN=uppS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.565e-17
Identity = 67/224 (29.91%), Postives = 102/224 (45.54%), Query Frame = -1
Query:  257 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQRHH 928
            GH+AG   L  +      L VK +++YAFS +N+ R  +E+++              E   L K  VRV  IG+   + +    A ++    T  N+ +V+   L Y    EI + ++E        Q       NP +D+TED   +            L  +    +Y DPD++IRTSGE RLSNFL WQS+    Y    LWP+     L  AI+++ + H
Sbjct:   42 GHKAGMDALQEVTIAASGLGVKVLTVYAFSTENWSRPDDEVKFIMNLPVKFFDKYVPE---LDKNNVRVQVIGDTHKLPKATYDAMQRACLRTKHNSGLVLNFALNYGGRSEITNAIKEIA------QDVLEAKLNP-DDITEDLVANH-----------LMTNSLPYLYRDPDLIIRTSGELRLSNFLPWQSAYSEFYFTPVLWPDFKKDELHKAIVDYNQRH 244          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_STRA3 (Undecaprenyl pyrophosphate synthetase OS=Streptococcus agalactiae serotype III GN=uppS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.565e-17
Identity = 67/224 (29.91%), Postives = 102/224 (45.54%), Query Frame = -1
Query:  257 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQRHH 928
            GH+AG   L  +      L VK +++YAFS +N+ R  +E+++              E   L K  VRV  IG+   + +    A ++    T  N+ +V+   L Y    EI + ++E        Q       NP +D+TED   +            L  +    +Y DPD++IRTSGE RLSNFL WQS+    Y    LWP+     L  AI+++ + H
Sbjct:   42 GHKAGMDALQEVTIAASGLGVKVLTVYAFSTENWSRPDDEVKFIMNLPVEFFDKYVPE---LDKNNVRVQVIGDTHKLPKATYDAMQRACLRTKHNSGLVLNFALNYGGRSEITNAIKEIA------QDVLEAKLNP-DDITEDLVANH-----------LMTNSLPYLYRDPDLIIRTSGELRLSNFLPWQSAYSEFYFTPVLWPDFKKDELHKAIVDYNQRH 244          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_RICBR (Undecaprenyl pyrophosphate synthetase OS=Rickettsia bellii (strain RML369-C) GN=uppS PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 4.376e-17
Identity = 58/222 (26.13%), Postives = 99/222 (44.59%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GHRAG   +  LL   + L + Y+++Y FS +N++R+  EI +                  L K G+++  IG L L+S+ ++      +  T  N ++ + I  +Y S +EI     +  + + KT+                           I   D++  +Y    PD D+LIR  G  R+SNFLLWQ++   LY  +  WP+     +I AI ++ +
Sbjct:   28 GHRAGADKVHELLPEFINLKIPYITLYTFSSENWQRSNTEISFLMRLLNIYLKKELDN---LHKNGIKIKVIGRLNLLSDSLQKQINNAIELTKDNNKLTLCIAFSYGSRQEITDACTKI-IASGKTE---------------------------ILESDIQNALYDPEMPDVDLLIRPGGVFRISNFLLWQAAYAELYFSQKYWPDFNKEDIINAIDDYSK 218          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_SYNPX (Undecaprenyl pyrophosphate synthetase OS=Synechococcus sp. (strain WH8102) GN=uppS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.715e-17
Identity = 61/223 (27.35%), Postives = 96/223 (43.05%), Query Frame = -1
Query:  266 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQND--VTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 928
            GHRAG   L S L+ C +  +  ++ YAFS +N+ R  +E+ +                  L +  VR+ F+G+L  +   ++         T+ N  I   +C  Y    E+V   +                R   N   + ED DE+            L   ++     DPD+LIRTSGE+R+SNFLLWQ +   ++  +  WP+     L  A+L+FQ
Sbjct:   51 GHRAGVEALKSTLRLCSDWGIAALTAYAFSTENWSRPGDEVNFLMTLFERVLQKELRT---LEEEQVRIRFLGDLDALPLKLQELIGDATERTAANDGIHFNVCTNYGGRRELVRAAQRLA-------------RQAANGDLMPEDIDENS-----------LAAELFTAGEQDPDLLIRTSGEHRISNFLLWQLAYAEIHVTDVFWPDFNAEALKRALLDFQ 246          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_RICFE (Undecaprenyl pyrophosphate synthetase OS=Rickettsia felis GN=uppS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.715e-17
Identity = 59/222 (26.58%), Postives = 97/222 (43.69%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GH+AG   +  LL   + L++ Y+++Y FS +N++R+  E+ +                  L K GV++  IG L L+S  ++      +  T  N +I + I  +Y S +EIV    +     KK             +++E                D+   +Y    PD D+LIR  G  R+SNFLLWQ++   LY     WP      +I AI ++ +
Sbjct:   37 GHKAGADKIRELLPEFINLNIPYITLYTFSSENWQRSSTEVDFLIKLLSIYFKNELNS---LHKNGVKIKVIGRLNLLSSSLQKQINNAIELTKNNNKITLCIAFSYGSRQEIVDACTKIIASGKK-------------EISES---------------DIGHALYDPEMPDVDLLIRPGGVYRISNFLLWQAAYAELYFSPKYWPAFNKDDIIEAINDYSK 227          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_PHOLL (Undecaprenyl pyrophosphate synthetase OS=Photorhabdus luminescens subsp. laumondii GN=uppS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.715e-17
Identity = 54/207 (26.09%), Postives = 98/207 (47.34%), Query Frame = -1
Query:  308 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPE 928
            GHRAG   + S + +  + +++ +++YAFS +N+ R + E+                    L K+ +R+  IG++G  SE ++    + ++ T+ NT + + I   Y    +IV +V++     K    +       Q D+TE+                +  +M +   P  D++IRT GE+R+SNFLLWQ +    Y  + LWP+
Sbjct:   41 GHRAGIKAVRSAVSFSAKHNIESLTLYAFSSENWNRPEQEVSSLMELFIFALDSEIKS---LHKHNIRLSVIGDIGRFSERLQDRIHRSVKLTANNTGLQLNIAANYGGRWDIVQSVQKIAQQIKDNSLE-------QQDITEEL---------------VNNYMNLSQQPQVDLVIRTGGEHRISNFLLWQIAYAEFYFTDILWPD 222          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_AQUPY (Undecaprenyl pyrophosphate synthetase OS=Aquifex pyrophilus GN=uppS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.715e-17
Identity = 56/223 (25.11%), Postives = 105/223 (47.09%), Query Frame = -1
Query:  263 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 931
            AGH  G      ++++ +EL +K+++++AFS +N+ R + E+                +   L K G+RV FIG    +++ +    +++   + K   + + + + Y   ++I+  V++   + ++             ++TE+             L+DL         PDPD+LIRT+GE R+SNFLLW  +   LY  E LWP+      + A+ +F R
Sbjct:   29 AGHYKGAEVAEDIVEFAIELGIKHLTLFAFSTENWNRPKGEVEALFELLRRYLQTKKDK---LYKLGIRVRFIGRRDRINKELVKLMQEIEEESKKFKNLFLNLAVDYGGRDDILRAVKKAVKLQRE-------------EITEELFS---------SLLDLS------CSPDPDLLIRTAGEKRISNFLLWNLAYTELYFSETLWPDFSREEFLKALEDFSR 220          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: DDPS3_ARATH (Dehydrodolichyl diphosphate synthase 3 OS=Arabidopsis thaliana GN=At5g58780 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.715e-17
Identity = 60/222 (27.03%), Postives = 102/222 (45.95%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GH AG   L+   + C +L +  VS +AFS +N+ R + E++                  +  +   RV  IGNL  + E +    +++  AT    +  +++ + YS   +I+   +    + KK++    +         ED DE          L++ E       +P PD+LIRTSGE R+SNF LWQ +   L+    LWP+     L+ A++++QR
Sbjct:   95 GHEAGAKRLIEFSELCFKLGIHTVSAFAFSTENWGRHKIEVKCLMSLIQHYLKSKIQ---YFQREETRVSVIGNLTKIPESLLRTVQEIEEATRSYKKKHLILAIDYSGRLDILRACKS---IVKKSEKGLIRE--------EDVDE---------ALIERELLTNCTEFPSPDLLIRTSGEQRISNFFLWQLAYTELFFSPVLWPDFDKDKLLEALVSYQR 293          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_XANOR (Undecaprenyl pyrophosphate synthetase OS=Xanthomonas oryzae pv. oryzae GN=uppS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.464e-17
Identity = 62/209 (29.67%), Postives = 95/209 (45.45%), Query Frame = -1
Query:  308 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETC--LVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPE 928
            GHRAG   +   + +C+E  V  ++++AFS +N+ R Q+E+                  G L + GV+V FIG+    + P+R       R+T+ N R+V+ I  +Y   ++I          +   + QP             E  DE     +  + L DL         P PD+ IRT G+ R+SNFLLWQ +   L+  E LWPE
Sbjct:   40 GHRAGARAVNRTIDFCLEKGVSALTLFAFSSENWGRPQDEVDALMKLFLHALDREV---GELQRRGVQVRFIGDRSRFAAPLRDRMAGAERSTAANARLVLSIAASYGGRQDIATAARALAEDVAAGRLQP-------------EQIDEALLSSR--VALADL---------PAPDLFIRTGGDTRISNFLLWQLAYTELWFTETLWPE 221          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_VIBVY (Undecaprenyl pyrophosphate synthetase OS=Vibrio vulnificus (strain YJ016) GN=uppS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.464e-17
Identity = 60/220 (27.27%), Postives = 98/220 (44.55%), Query Frame = -1
Query:  269 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNF 928
            GH+ G   +   +    +L+++ ++++AFS +N++R + E+                +   L K  +R+  IG+    SE ++    +    T+ NT +VI +   Y    +I   V+       K   Q         D+TED               D+ KH+ M   P+ D+LIRTSGE R+SNF+LWQ +   +Y     WP+ G   LI AI  F
Sbjct:   36 GHKKGVSAVRKTIAAASKLNIQAITLFAFSSENWRRPEEEVGLLMELFITVLSSEVKK---LHKNNLRLRIIGDTSRFSERLQKKIVEAQELTASNTGMVINVAANYGGKWDITQAVQ-------KVAQQVALGDLSAEDITED---------------DIAKHLTMSDLPEVDLLIRTSGECRISNFMLWQMAYAEMYFTPVFWPDFGEESLIEAITWF 230          
The following BLAST results are available for this feature:
BLAST of CV885158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
UPPS_STRA52.565e-1729.91Undecaprenyl pyrophosphate synthetase OS=Streptoco... [more]
UPPS_STRA32.565e-1729.91Undecaprenyl pyrophosphate synthetase OS=Streptoco... [more]
UPPS_RICBR4.376e-1726.13Undecaprenyl pyrophosphate synthetase OS=Rickettsi... [more]
UPPS_SYNPX5.715e-1727.35Undecaprenyl pyrophosphate synthetase OS=Synechoco... [more]
UPPS_RICFE5.715e-1726.58Undecaprenyl pyrophosphate synthetase OS=Rickettsi... [more]
UPPS_PHOLL5.715e-1726.09Undecaprenyl pyrophosphate synthetase OS=Photorhab... [more]
UPPS_AQUPY5.715e-1725.11Undecaprenyl pyrophosphate synthetase OS=Aquifex p... [more]
DDPS3_ARATH5.715e-1727.03Dehydrodolichyl diphosphate synthase 3 OS=Arabidop... [more]
UPPS_XANOR7.464e-1729.67Undecaprenyl pyrophosphate synthetase OS=Xanthomon... [more]
UPPS_VIBVY7.464e-1727.27Undecaprenyl pyrophosphate synthetase OS=Vibrio vu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885158 ID=CV885158; Name=CV885158; organism=Citrus sinensis; type=EST; length=943bp
GTAATACATTCCATATGGTTTTATTTTGAAAAGTCACCTTTCATGGGGTT
TGTGGTAGCATATTATCCCATTAAGAATCTAACCGACCACGCAAACATAA
AGGACAGCATTTGCAGATGCTTATCTGTTTGAGCTTCCACCAAAACTCAC
CATGATGTGAACCTAGGAGCAGAAATCACACGATGTTGTTCAGATAGTAT
ATGGTTCTAGGGGGCAAAGGATACTAGAGCTGCTTCTTCTTCTTTTCCAA
ATAGGCGTGGTGTCGTTGAAAGTTCAAGATAGCCCAGATCAAGTGCCGCA
AACCAATTTCTGGCCACAGTGCTTCTGGGGCATACAACATGCAGTTGCTG
CTCTGCCAAAGAAGGAAATTGCTCAGGCGGTTCTCGCCAGAAGTTCGGAT
GAGGATGTCAGGATCTGGATATACACCCATGTACATATGCTTCTCAAGAT
CTACAAGCTTAATAGTATTTTTCTCCTTATTTTTATGCTCATCAGCATCT
TCAGTAACATCATTTTGAGGATTACGTGGCTTAAATGCTTGGGGCTGGGT
TTTCTTTGTAACGAGGCAGGTTTCTTCAACAGTATGGACGATCTCCTCAG
TGGAACTATATGCCAGGCAGATTAGAATCACGATCCTGGTGTTTTTGGAA
GTAGCTCTCATCACTTTTTCAGCTGCAACCCTAATAGGCTCACTCACTAG
TCCTAAGTTGCCTATGAAACATACTCTGACACCATATTTACTAAGAAAAC
CATCTTCCCGAAGCAGCAACTCCATCTTTTCCAACATTAGATCCATCAAA
TATCGAATCTCGTTTTGCGTTCGTTTGAAATTATCTATACTGAAGGCGTA
GATAGAGACATACTTCACACTCAATTCGACGCAGTACTTCAACAGGGACA
TGAGGGTCAAAAATCCAGCCCTGTGACCAGCCCCCTCTCCTGC
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