CV885158

Overview
NameCV885158
Unique NameCV885158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length943
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885158_ssr233 microsatellite CV885158_ssr233:233..244. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_VIBVU (Undecaprenyl pyrophosphate synthetase OS=Vibrio vulnificus GN=uppS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.464e-17
Identity = 60/220 (27.27%), Postives = 98/220 (44.55%), Query Frame = -1
Query:  269 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNF 928
            GH+ G   +   +    +L+++ ++++AFS +N++R + E+                +   L K  +R+  IG+    SE ++    +    T+ NT +VI +   Y    +I   V+       K   Q         D+TED               D+ KH+ M   P+ D+LIRTSGE R+SNF+LWQ +   +Y     WP+ G   LI AI  F
Sbjct:   36 GHKKGVSAVRKTIAAASKLNIQAITLFAFSSENWRRPEEEVGLLMELFITVLSSEVKK---LHKNNLRLRIIGDTSRFSERLQKKIVEAQELTASNTGMVINVAANYGGKWDITQAVQ-------KVAQQVALGDLSAEDITED---------------DIAKHLTMSDLPEVDLLIRTSGECRISNFMLWQMAYAEMYFTPVFWPDFGEESLIEAITWF 230          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_STRR6 (Undecaprenyl pyrophosphate synthetase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=uppS PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 7.464e-17
Identity = 66/224 (29.46%), Postives = 100/224 (44.64%), Query Frame = -1
Query:  257 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQRHH 928
            GH+AG   L ++ K   +L VK +++YAFS +N+ R   E+++              E   L    V++  IG    + +    A  K    T  NT +++   L Y    EI   ++   L+++        P     D+TE+         N +    L K +      DPD++IRTSGE RLSNFL WQ +   LY  + LWP+     L  AIL + R H
Sbjct:   44 GHKAGMEALQTVTKAANKLGVKVITVYAFSTENWTRPDQEVKFIMNLPVEFYDNYVPE---LHANNVKIQMIGETDRLPKQTFEALTKAEELTKNNTGLILNFALNYGGRAEITQALK---LISQDVLDAKINP----GDITEELIG------NYLFTQHLPKDLR-----DPDLIIRTSGELRLSNFLPWQGAYSELYFTDTLWPDFDEAALQEAILAYNRRH 246          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_STRPN (Undecaprenyl pyrophosphate synthetase OS=Streptococcus pneumoniae GN=uppS PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.464e-17
Identity = 66/224 (29.46%), Postives = 100/224 (44.64%), Query Frame = -1
Query:  257 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQRHH 928
            GH+AG   L ++ K   +L VK +++YAFS +N+ R   E+++              E   L    V++  IG    + +    A  K    T  NT +++   L Y    EI   ++   L+++        P     D+TE+         N +    L K +      DPD++IRTSGE RLSNFL WQ +   LY  + LWP+     L  AIL + R H
Sbjct:   44 GHKAGMEALQTVTKAANKLGVKVITVYAFSTENWTRPDQEVKFIMNLPVEFYDNYVPE---LHANNVKIQMIGETDRLPKQTFEALTKAEELTKNNTGLILNFALNYGGRAEITQALK---LISQDVLDAKINP----GDITEELIG------NYLFTQHLPKDLR-----DPDLIIRTSGELRLSNFLPWQGAYSELYFTDTLWPDFDEAALQEAILAYNRRH 246          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_STRP3 (Undecaprenyl pyrophosphate synthetase OS=Streptococcus pyogenes serotype M3 GN=uppS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.464e-17
Identity = 64/220 (29.09%), Postives = 96/220 (43.64%), Query Frame = -1
Query:  269 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNF 928
            GH+AG   L  +     EL VK +++YAFS +N+ R Q+E+ +                  L +  V++  IG    + E    A    +  T +NT +++   L Y    EI   V     + +        P     D+TED           I    +  H+   +Y DPD++IRTSGE RLSNFL WQS+    Y    LWP+     L+ AI ++
Sbjct:   41 GHKAGMDALQEVTITASELGVKVLTVYAFSTENWSRPQDEVSFIMNLPVTFFDKYVPV---LHENNVKIQMIGETSRLPEDTLAALNAAIDKTKRNTGLILNFALNYGGRAEITSAVR---FIAQDVLDAKLNP----GDITEDL----------IANYLMTDHLPY-LYRDPDLIIRTSGELRLSNFLPWQSAYSEFYFTPVLWPDFKKAELLKAIADY 239          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_STAAW (Undecaprenyl pyrophosphate synthetase OS=Staphylococcus aureus (strain MW2) GN=uppS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.464e-17
Identity = 60/221 (27.15%), Postives = 98/221 (44.34%), Query Frame = -1
Query:  266 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 928
            GH  G  T+  + +   ++ VKY+++YAFS +N+ R ++E+ Y              E   L +  V+V  IG    + +    A       T+ NT + ++  + Y    E+VH+++             F   + Q   ++  DE             +  H+    YPDP++LIRTSGE R+SNFL+WQ S       + LWP+     LI  I  +Q
Sbjct:   49 GHYEGMQTIKKITRVASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPE---LIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNM-----------FDELHQQGLNSDIIDE-----------TYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQ 244          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_STAAS (Undecaprenyl pyrophosphate synthetase OS=Staphylococcus aureus (strain MSSA476) GN=uppS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.464e-17
Identity = 60/221 (27.15%), Postives = 98/221 (44.34%), Query Frame = -1
Query:  266 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 928
            GH  G  T+  + +   ++ VKY+++YAFS +N+ R ++E+ Y              E   L +  V+V  IG    + +    A       T+ NT + ++  + Y    E+VH+++             F   + Q   ++  DE             +  H+    YPDP++LIRTSGE R+SNFL+WQ S       + LWP+     LI  I  +Q
Sbjct:   49 GHYEGMQTIKKITRVASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPE---LIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNM-----------FDELHQQGLNSDIIDE-----------TYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQ 244          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_STAAR (Undecaprenyl pyrophosphate synthetase OS=Staphylococcus aureus (strain MRSA252) GN=uppS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.464e-17
Identity = 60/221 (27.15%), Postives = 98/221 (44.34%), Query Frame = -1
Query:  266 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 928
            GH  G  T+  + +   ++ VKY+++YAFS +N+ R ++E+ Y              E   L +  V+V  IG    + +    A       T+ NT + ++  + Y    E+VH+++             F   + Q   ++  DE             +  H+    YPDP++LIRTSGE R+SNFL+WQ S       + LWP+     LI  I  +Q
Sbjct:   49 GHYEGMQTIKKITRVASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPE---LIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNM-----------FDELHQQGLNSDIIDE-----------TYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQ 244          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_STAAN (Undecaprenyl pyrophosphate synthetase OS=Staphylococcus aureus (strain N315) GN=uppS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.464e-17
Identity = 60/221 (27.15%), Postives = 98/221 (44.34%), Query Frame = -1
Query:  266 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 928
            GH  G  T+  + +   ++ VKY+++YAFS +N+ R ++E+ Y              E   L +  V+V  IG    + +    A       T+ NT + ++  + Y    E+VH+++             F   + Q   ++  DE             +  H+    YPDP++LIRTSGE R+SNFL+WQ S       + LWP+     LI  I  +Q
Sbjct:   49 GHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPE---LIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNM-----------FDELHQQGLNSDIIDE-----------TYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQ 244          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_STAAM (Undecaprenyl pyrophosphate synthetase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=uppS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.464e-17
Identity = 60/221 (27.15%), Postives = 98/221 (44.34%), Query Frame = -1
Query:  266 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 928
            GH  G  T+  + +   ++ VKY+++YAFS +N+ R ++E+ Y              E   L +  V+V  IG    + +    A       T+ NT + ++  + Y    E+VH+++             F   + Q   ++  DE             +  H+    YPDP++LIRTSGE R+SNFL+WQ S       + LWP+     LI  I  +Q
Sbjct:   49 GHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPE---LIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNM-----------FDELHQQGLNSDIIDE-----------TYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQ 244          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_STAAC (Undecaprenyl pyrophosphate synthetase OS=Staphylococcus aureus (strain COL) GN=uppS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.464e-17
Identity = 60/221 (27.15%), Postives = 98/221 (44.34%), Query Frame = -1
Query:  266 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 928
            GH  G  T+  + +   ++ VKY+++YAFS +N+ R ++E+ Y              E   L +  V+V  IG    + +    A       T+ NT + ++  + Y    E+VH+++             F   + Q   ++  DE             +  H+    YPDP++LIRTSGE R+SNFL+WQ S       + LWP+     LI  I  +Q
Sbjct:   49 GHYEGMQTIKKITRVASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPE---LIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNM-----------FDELHQQGLNSDIIDE-----------TYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQ 244          
The following BLAST results are available for this feature:
BLAST of CV885158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
UPPS_VIBVU7.464e-1727.27Undecaprenyl pyrophosphate synthetase OS=Vibrio vu... [more]
UPPS_STRR67.464e-1729.46Undecaprenyl pyrophosphate synthetase OS=Streptoco... [more]
UPPS_STRPN7.464e-1729.46Undecaprenyl pyrophosphate synthetase OS=Streptoco... [more]
UPPS_STRP37.464e-1729.09Undecaprenyl pyrophosphate synthetase OS=Streptoco... [more]
UPPS_STAAW7.464e-1727.15Undecaprenyl pyrophosphate synthetase OS=Staphyloc... [more]
UPPS_STAAS7.464e-1727.15Undecaprenyl pyrophosphate synthetase OS=Staphyloc... [more]
UPPS_STAAR7.464e-1727.15Undecaprenyl pyrophosphate synthetase OS=Staphyloc... [more]
UPPS_STAAN7.464e-1727.15Undecaprenyl pyrophosphate synthetase OS=Staphyloc... [more]
UPPS_STAAM7.464e-1727.15Undecaprenyl pyrophosphate synthetase OS=Staphyloc... [more]
UPPS_STAAC7.464e-1727.15Undecaprenyl pyrophosphate synthetase OS=Staphyloc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885158 ID=CV885158; Name=CV885158; organism=Citrus sinensis; type=EST; length=943bp
GTAATACATTCCATATGGTTTTATTTTGAAAAGTCACCTTTCATGGGGTT
TGTGGTAGCATATTATCCCATTAAGAATCTAACCGACCACGCAAACATAA
AGGACAGCATTTGCAGATGCTTATCTGTTTGAGCTTCCACCAAAACTCAC
CATGATGTGAACCTAGGAGCAGAAATCACACGATGTTGTTCAGATAGTAT
ATGGTTCTAGGGGGCAAAGGATACTAGAGCTGCTTCTTCTTCTTTTCCAA
ATAGGCGTGGTGTCGTTGAAAGTTCAAGATAGCCCAGATCAAGTGCCGCA
AACCAATTTCTGGCCACAGTGCTTCTGGGGCATACAACATGCAGTTGCTG
CTCTGCCAAAGAAGGAAATTGCTCAGGCGGTTCTCGCCAGAAGTTCGGAT
GAGGATGTCAGGATCTGGATATACACCCATGTACATATGCTTCTCAAGAT
CTACAAGCTTAATAGTATTTTTCTCCTTATTTTTATGCTCATCAGCATCT
TCAGTAACATCATTTTGAGGATTACGTGGCTTAAATGCTTGGGGCTGGGT
TTTCTTTGTAACGAGGCAGGTTTCTTCAACAGTATGGACGATCTCCTCAG
TGGAACTATATGCCAGGCAGATTAGAATCACGATCCTGGTGTTTTTGGAA
GTAGCTCTCATCACTTTTTCAGCTGCAACCCTAATAGGCTCACTCACTAG
TCCTAAGTTGCCTATGAAACATACTCTGACACCATATTTACTAAGAAAAC
CATCTTCCCGAAGCAGCAACTCCATCTTTTCCAACATTAGATCCATCAAA
TATCGAATCTCGTTTTGCGTTCGTTTGAAATTATCTATACTGAAGGCGTA
GATAGAGACATACTTCACACTCAATTCGACGCAGTACTTCAACAGGGACA
TGAGGGTCAAAAATCCAGCCCTGTGACCAGCCCCCTCTCCTGC
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