CV885158

Overview
NameCV885158
Unique NameCV885158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length943
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885158_ssr233 microsatellite CV885158_ssr233:233..244. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_ZYMMO (Undecaprenyl pyrophosphate synthetase OS=Zymomonas mobilis GN=uppS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.748e-17
Identity = 59/223 (26.46%), Postives = 107/223 (47.98%), Query Frame = -1
Query:  263 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 931
            AGH+ G   + + ++   E+ ++ +++YAFS +N++R  +E+                    + + G+ +  IG+   + + +     + +  T+ NTR+ ++  L Y + +E+VH       VTK+              + E A E +   +N I +  +E  +Y    P  D++IRTSGE RLSNFLLWQ++   L   + LWP+ G   L  A+  + R
Sbjct:   17 AGHKKGADAVKTTVRAAAEMGIEVLTLYAFSSENWRRPASEVADLMGLLRLCLRQEMHN---IKERGICLKVIGDYTRLDQDLVALLNQAIEITANNTRLTLVFALNYGAQDELVH-------VTKR--------------IAEKAKEGQLDPEN-IDVGTIESLLYTHDLPPLDLVIRTSGEKRLSNFLLWQAAYAELLFIDTLWPDFGSETLKAAVEEYAR 214          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_NITEU (Undecaprenyl pyrophosphate synthetase OS=Nitrosomonas europaea GN=uppS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.748e-17
Identity = 60/223 (26.91%), Postives = 102/223 (45.74%), Query Frame = -1
Query:  263 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 931
            AGH  G   +   +K C+E  V +++I+AFS +N++R   E++                   L + GVR   IG++      I    ++    T+ N+R+   +   Y    +I+  V +  ++T+          NP + VT D               D+ +H+ +   P+PD+ IRT GE R+SNFLLWQ +   LY  + LWP+     L  AI ++++
Sbjct:   41 AGHTQGVEAVRGTIKACIERGVSHLTIFAFSSENWRRPAEEVKLLMQLFLAALEREVTG---LHENGVRFRVIGDISKFDPKIVDFVQQGEALTAGNSRLNFTVAANYGGRWDIMQAVRK--MITE----------NPDSAVTFDEP-------------DIARHLALADAPEPDLFIRTGGECRISNFLLWQLAYTELYFTDTLWPDFDASALDEAIASYRK 235          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: DDPS1_ARATH (Dehydrodolichyl diphosphate synthase 1 OS=Arabidopsis thaliana GN=DPS PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.273e-16
Identity = 63/222 (28.38%), Postives = 100/222 (45.05%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GH AG   L+ + + C EL V  VS +AFS +N+ R + EI                +  F  +  VRV  IGN   + E +     ++  AT       +++ + YS   +I+H  +    + KK++    +         ED DE          L++ E       +P PD++IRTSGE R+SNF LWQ +   L+     WP+     L+ A+ ++QR
Sbjct:   95 GHEAGAKRLIDIAELCFELGVHTVSAFAFSTENWGRDKIEIDNLMSLIQHYRNKSNIK--FFHRSEVRVSVIGNKTKIPESLLKEIHEIEEATKGYKNKHLIMAVDYSGKFDIMHACKS---LVKKSEKGLIRE--------EDVDE---------ALIERELLTNCSDFPSPDLMIRTSGEQRISNFFLWQLAYSELFFSPVFWPDFDKDKLLEALASYQR 294          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_XANAC (Undecaprenyl pyrophosphate synthetase OS=Xanthomonas axonopodis pv. citri GN=uppS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.663e-16
Identity = 62/209 (29.67%), Postives = 96/209 (45.93%), Query Frame = -1
Query:  308 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETC--LVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPE 928
            GHRAG   +   + +C+E  V  ++++AFS +N+ R Q+E+                E   L + GV+V FIG+    + P+R       R+T+ N+R+V+ I  +Y   ++I          +   + QP             E  DE     +  + L DL         P PD+ IRT G+ R+SNFLLWQ +   L+  E LWPE
Sbjct:   39 GHRAGARAVNRTIDFCLEKGVSALTLFAFSSENWGRPQDEVDALMKLFLHALDREVEE---LQRRGVQVRFIGDRSRFAAPLRDRMAGAERSTAANSRLVLSIAASYGGRQDIASAARALAEDVAAGRLQP-------------EQIDEALLSSR--VALADL---------PAPDLFIRTGGDTRISNFLLWQLAYTELWFTETLWPE 220          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_RICTY (Undecaprenyl pyrophosphate synthetase OS=Rickettsia typhi GN=uppS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.663e-16
Identity = 56/222 (25.23%), Postives = 100/222 (45.05%), Query Frame = -1
Query:  263 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 928
            GH+AG   +  LL   + L++ Y+++Y FS +N++R+ +E+ +                  L + GV++  IG L L+   ++      +  T  N +I + I  +Y S +EIV    +                N +  V+E+               D++  +Y    PD D+LIR+ G  R+SNFLLWQ++   LY  +  WP+     +  AI ++ +
Sbjct:   28 GHKAGADKIRELLPEFINLNIPYITLYTFSSENWQRSSSEVNFLIKLLSLYLKNELDS---LHENGVKIKVIGRLNLLRSSLQKQINNAIELTQNNNKIKLCIAFSYGSRQEIVDACTKII-------------ANGKKQVSEN---------------DIQHALYDPEMPDVDLLIRSGGVYRISNFLLWQAAYAELYFSQKYWPDFNKDDIHEAINDYSK 218          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_HAEIN (Undecaprenyl pyrophosphate synthetase OS=Haemophilus influenzae GN=uppS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.663e-16
Identity = 58/224 (25.89%), Postives = 96/224 (42.86%), Query Frame = -1
Query:  257 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQRHH 928
            GH  G   +   + Y  ++ V+ +++YAFS +N+ R + EI                +   L K  + +  IG++   SE ++   +K    T KNT + + I   Y    +I+   ++     KK +          +D+     +H    +N                P  D+LIRTSGE R+SNFLLWQ +   LY  + LWP+        AI ++Q+ H
Sbjct:   34 GHTNGVTAVRKAVAYARQIGVEVLTLYAFSSENWSRPEQEISALMSLFMQALDREVKK---LHKNNICLKIIGDVSRFSETLQEKIKKAENLTEKNTALTLNIAANYGGCWDIIQAAKQIAEKVKKEEMSV-------SDINNSTFQHHLATQNA---------------PPVDLLIRTSGEQRISNFLLWQIAYAELYFSDVLWPDFNQLEFNRAIASYQQRH 232          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS1_CORDI (Undecaprenyl pyrophosphate synthetase 1 OS=Corynebacterium diphtheriae GN=uppS1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.663e-16
Identity = 51/206 (24.76%), Postives = 89/206 (43.20%), Query Frame = -1
Query:  311 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWP 928
            GHR G   +  ++++C    V+ V++Y  S +N  R  +E++                +        R+  +G+L L+ + +     +   +T+ NT + + + + Y   +EIV  V E                    D    A     +    I +  + KH+Y    PDPD++IRTSGE RLS FLLWQ++   ++  +  WP
Sbjct:   60 GHRVGAKKIGEMVRWCAHTDVELVTVYLLSTENLGRASDELQMLFDIIGDVVDELASPET-----NCRLRLVGHLDLLPDDVSRRLTQAQDSTNDNTGVFVNVAVGYGGRQEIVDAVRELI------------------DAEAAAGTTATEMAEKISVDSISKHLYTSGQPDPDLVIRTSGEQRLSGFLLWQAAYSEIWFTDTYWP 242          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_CHLMU (Undecaprenyl pyrophosphate synthetase OS=Chlamydia muridarum GN=uppS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.172e-16
Identity = 59/223 (26.46%), Postives = 102/223 (45.74%), Query Frame = -1
Query:  263 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQR 931
            +GHR G  ++  ++     L V+ ++++AFS +NF R++ E+                   FL    +R+  IG+L  + + ++    K + AT+  + + ++  + Y S  E+V   +E                    D+T     +K    N I    +  ++     PDPD+LIRT GE R+SNFLLWQ +   LY  + LWP+     L+ AI  +Q+
Sbjct:   49 SGHRRGADSIPQIVDTAALLGVEALTLFAFSTENFSRSKTEVAELFSLFNSQLHSKL---SFLHDREIRLRCIGDLSKLPQELQNNIAKAVSATTHYSHMELIFAINYGSKNELVRAFKEL-----------------HQDLT-----NKKISINEISEELISSYLDTSGLPDPDLLIRTGGEMRVSNFLLWQIAYTELYVTDVLWPDFTAHDLLEAIKTYQQ 246          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_BACSK (Undecaprenyl pyrophosphate synthetase OS=Bacillus clausii (strain KSM-K16) GN=uppS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.836e-16
Identity = 61/223 (27.35%), Postives = 103/223 (46.19%), Query Frame = -1
Query:  266 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNL-GLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 931
            AGHR G  T+  +++    L+++ +++YAFS +N+KR + E+ +                  L +  V+V  +G+  GL S  +  A ++ +  T  NT +++   L Y S  E+   +++   + KK Q     P +    +TE+                +  H+      DPD+LIRTSGE RLSNF+LWQ +       +  WP     H   A+L +Q
Sbjct:   52 AGHREGMKTVNKIVRAANTLNIEILTLYAFSTENWKRPKAEVEFLLKLPERYLKSELPT---LIEENVQVRLMGSKDGLPSYTLH-AVDEAIEKTKHNTGLILNFALNYGSRFELTSAMQQ---IAKKVQQGELMPEH----ITEET---------------ISAHLMSNHLRDPDLLIRTSGELRLSNFMLWQIAYSEFLFMDVYWPNFTEHHFYKAVLTYQ 248          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS1_STRAW (Undecaprenyl pyrophosphate synthetase 1 OS=Streptomyces avermitilis GN=uppS1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.836e-16
Identity = 62/227 (27.31%), Postives = 95/227 (41.85%), Query Frame = -1
Query:  257 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLE---KHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQRHH 928
            GHRAG   +   L +C E  V  V+++  S DNF R Q E+                 DG       RV  +G   ++   ++ A ++    T+    I++ + + Y   +EI   V    L                     DA E      +    VD++   KH+Y G  PDPD++IRTSGE RLS F+LWQ+++   Y  E  WP       + A+ ++   H
Sbjct:   53 GHRAGADKIEEFLGWCSETDVGVVTLWLLSTDNFDRPQEELG-PLLGIIEGVVRTLAADGRW-----RVHHVGTPDILPSQMQNALKEAEETTAHVDGILVNVAIGYGGRQEIADAVRSMLL---------------------DAHEKGTSIPDLADAVDVDLIGKHLYTGAQPDPDLVIRTSGEQRLSGFMLWQTAHSEYYFCEVFWPAFRKVDFLRALRDYAARH 252          
The following BLAST results are available for this feature:
BLAST of CV885158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
UPPS_ZYMMO9.748e-1726.46Undecaprenyl pyrophosphate synthetase OS=Zymomonas... [more]
UPPS_NITEU9.748e-1726.91Undecaprenyl pyrophosphate synthetase OS=Nitrosomo... [more]
DDPS1_ARATH1.273e-1628.38Dehydrodolichyl diphosphate synthase 1 OS=Arabidop... [more]
UPPS_XANAC1.663e-1629.67Undecaprenyl pyrophosphate synthetase OS=Xanthomon... [more]
UPPS_RICTY1.663e-1625.23Undecaprenyl pyrophosphate synthetase OS=Rickettsi... [more]
UPPS_HAEIN1.663e-1625.89Undecaprenyl pyrophosphate synthetase OS=Haemophil... [more]
UPPS1_CORDI1.663e-1624.76Undecaprenyl pyrophosphate synthetase 1 OS=Coryneb... [more]
UPPS_CHLMU2.172e-1626.46Undecaprenyl pyrophosphate synthetase OS=Chlamydia... [more]
UPPS_BACSK2.836e-1627.35Undecaprenyl pyrophosphate synthetase OS=Bacillus ... [more]
UPPS1_STRAW2.836e-1627.31Undecaprenyl pyrophosphate synthetase 1 OS=Strepto... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885158 ID=CV885158; Name=CV885158; organism=Citrus sinensis; type=EST; length=943bp
GTAATACATTCCATATGGTTTTATTTTGAAAAGTCACCTTTCATGGGGTT
TGTGGTAGCATATTATCCCATTAAGAATCTAACCGACCACGCAAACATAA
AGGACAGCATTTGCAGATGCTTATCTGTTTGAGCTTCCACCAAAACTCAC
CATGATGTGAACCTAGGAGCAGAAATCACACGATGTTGTTCAGATAGTAT
ATGGTTCTAGGGGGCAAAGGATACTAGAGCTGCTTCTTCTTCTTTTCCAA
ATAGGCGTGGTGTCGTTGAAAGTTCAAGATAGCCCAGATCAAGTGCCGCA
AACCAATTTCTGGCCACAGTGCTTCTGGGGCATACAACATGCAGTTGCTG
CTCTGCCAAAGAAGGAAATTGCTCAGGCGGTTCTCGCCAGAAGTTCGGAT
GAGGATGTCAGGATCTGGATATACACCCATGTACATATGCTTCTCAAGAT
CTACAAGCTTAATAGTATTTTTCTCCTTATTTTTATGCTCATCAGCATCT
TCAGTAACATCATTTTGAGGATTACGTGGCTTAAATGCTTGGGGCTGGGT
TTTCTTTGTAACGAGGCAGGTTTCTTCAACAGTATGGACGATCTCCTCAG
TGGAACTATATGCCAGGCAGATTAGAATCACGATCCTGGTGTTTTTGGAA
GTAGCTCTCATCACTTTTTCAGCTGCAACCCTAATAGGCTCACTCACTAG
TCCTAAGTTGCCTATGAAACATACTCTGACACCATATTTACTAAGAAAAC
CATCTTCCCGAAGCAGCAACTCCATCTTTTCCAACATTAGATCCATCAAA
TATCGAATCTCGTTTTGCGTTCGTTTGAAATTATCTATACTGAAGGCGTA
GATAGAGACATACTTCACACTCAATTCGACGCAGTACTTCAACAGGGACA
TGAGGGTCAAAAATCCAGCCCTGTGACCAGCCCCCTCTCCTGC
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