CV885157

Overview
NameCV885157
Unique NameCV885157
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885157 vs. ExPASy Swiss-Prot
Match: UPPS_SALTI (Undecaprenyl pyrophosphate synthetase OS=Salmonella typhi GN=uppS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.313e-15
Identity = 60/230 (26.09%), Postives = 102/230 (44.35%), Query Frame = 1
Query:   85 HIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXXDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPE 774
            H+A I+DGN R+AKK        GH+AG  ++   + +     +  +++YAFS +N+ R   E+                    L ++ VR+  IG++   +  ++    K    T+ NT + + I   Y    +IV  V +   + +  Q    +P        +  DE +           L + + M      D++IRT GE+R+SNFLLWQ +   LY  + LWP+
Sbjct:   19 HVAIIMDGNGRWAKKQGKI-RAFGHKAGAKSVRRAVSFAANNGIDALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKS---LHRHNVRLRIIGDISRFNSRLQERIRKSEALTAHNTGLTLNIAANYGGRWDIVQGVRQ---LAELVQAGVLRP--------DQIDEER-----------LGQQICMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPD 222          
BLAST of CV885157 vs. ExPASy Swiss-Prot
Match: UPPS_BUCAI (Undecaprenyl pyrophosphate synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=uppS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.313e-15
Identity = 62/245 (25.31%), Postives = 108/245 (44.08%), Query Frame = 1
Query:   79 PNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXXDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNF 813
            P H+A I+DGN R+A +        GH+ GF  +   +K+ +  ++K +++YAFS +N+ R   EI+                   L K+ +R   IG++    + ++ +     + T  NT +++ I   Y    +I+ +V++                   N V     +     +NTI      +++        D++IRT GE R+SNFLLWQ +   LY  + LWP+        AI +F
Sbjct:   18 PCHVAIIMDGNGRWATRQGKI-RIMGHKEGFRAVKEAIKFSIANNLKILTLYAFSSENWNRPLFEIKALMELFLFALDTEIKN---LKKHNIRFKVIGDITCFDKKLQNSIHYAEQITFDNTGLILNIAANYGGRWDIIESVKKII-----------------NRVQRGILDVNKIHENTIS-----QYLSTSELLPVDLVIRTGGEKRISNFLLWQIAYSELYFTDVLWPDFNCHIFQHAIDSF 236          
BLAST of CV885157 vs. ExPASy Swiss-Prot
Match: UPPS_WIGBR (Undecaprenyl pyrophosphate synthetase OS=Wigglesworthia glossinidia brevipalpis GN=uppS PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.112e-14
Identity = 62/241 (25.73%), Postives = 112/241 (46.47%), Query Frame = 1
Query:   79 PNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXXDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWA 801
            P HIA I+DGN R+AK         GH+AG  +    +K+ +   +  +++YAFS +N+KR   E+                 D F  K  +R+  IG++   +  ++   +K  + T KN  + + I   Y    +I+  V++   + K+ +     P              +  E N  + + + + + +      D++IRT GE+R+SNFLLWQ +   L+  + LWP+    H+I++
Sbjct:   12 PRHIAIIMDGNGRWAKNRGKL-RIFGHKAGVESAKKAIKFAINNHLNALTLYAFSSENWKRPIQEVS--DLMELFSSVLNNAIDSF-KKNNIRLKIIGDISKFNLKLQKYIKKSEKITYKNNGLNLNIAANYGGRWDIIQGVKK---IAKQVKKGIIYP-------------DQINESNFCRFICMNELVPV------DLVIRTGGEHRISNFLLWQIAYSELFFTDVLWPDFD--HVIFS 224          
BLAST of CV885157 vs. ExPASy Swiss-Prot
Match: UPPS_SHEON (Undecaprenyl pyrophosphate synthetase OS=Shewanella oneidensis GN=uppS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.411e-14
Identity = 56/246 (22.76%), Postives = 109/246 (44.31%), Query Frame = 1
Query:   76 IPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXXDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNF 813
            +P H+A I+DGN R+A+         GH+AG   +   +    +L ++ ++++AFS +N++R   E+                    L K  V++  IG++   S  ++         T+ N+ +++ +   Y    +I+   ++   + +K +          +  TE+A               L +H+ M    + D++IRT G+ R+SNF+LWQ++   L   + LWP+   +    AI  F
Sbjct:   36 LPKHVAIIMDGNGRWAQTQGKP-RVMGHKAGVKAVRRAVSAASQLGIQSLTLFAFSSENWRRPDKEVSLLMELFFTVLQREIK---LLDKNQVKLNIIGDISRFSARLQKQIRAAEEKTAGNSGLILNVAANYGGRWDILQAAQK---LAEKVETGEMT----SSQFTEEA---------------LSEHLCMQNQSEVDLIIRTGGDYRISNFVLWQAAYAELVFLDTLWPDFDEQAFHEAIATF 255          
The following BLAST results are available for this feature:
BLAST of CV885157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 184
Match NameE-valueIdentityDescription
UPPS_SALTI1.313e-1526.09Undecaprenyl pyrophosphate synthetase OS=Salmonell... [more]
UPPS_BUCAI1.313e-1525.31Undecaprenyl pyrophosphate synthetase OS=Buchnera ... [more]
UPPS_WIGBR1.112e-1425.73Undecaprenyl pyrophosphate synthetase OS=Wiggleswo... [more]
UPPS_SHEON9.411e-1422.76Undecaprenyl pyrophosphate synthetase OS=Shewanell... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885157 ID=CV885157; Name=CV885157; organism=Citrus sinensis; type=EST; length=897bp
GAAGAAAGTAAACTGTGCAGGAAGCTGGGAGTTTTCATGAGGAAATGCGT
GTTTAGGATACTATCCGTGGGTGTTATTCCAAATCATATTGCATTCATAT
TGGACGGGAACCGAAGATTCGCCAAGAAGCACAATCTGGCAGGAGAGGGG
GCTGGTCACAGGGCTGGATTTTTGACCCTCATGTCCCTGTTGAAGTACTG
CGTCGAATTGAGTGTGAAGTATGTCTCTATCTACGCCTTCAGTATAGATA
ATTTCAAACGAACGCAAAACGAGATTCGATATTTGATGGATCTAATGTTG
GAAAAGATGGAGTTGCTGCTTCGGGAAGATGGTTTTCTTAGTAAATATGG
TGTCAGAGTATGTTTCATAGGCAACTTAGGACTAGTGAGTGAGCCTATTA
GGGTTGCAGCTGAAAAAGTGATGAGAGCTACTTCCAAAAACACCAGGATC
GTGATTCTAATCTGCCTGGCATATAGTTCCACTGAGGAGATCGTCCATAC
TGTTGAAGAAACCTGCCTCGTTACAAAGAAAACCCAGCCCCAAGCATTTA
AGCCACGTAATCCTCAAAATGATGTTACTGAAGATGCTGATGAGCATAAA
AATAAGGAGAAAAATACTATTAAGCTTGTAGATCTTGAGAAGCATATGTA
CATGGGTGTATATCCAGATCCTGACATCCTCATCCGAACTTCTGGCGAGA
ACCGCCTGAGCAATTTCCTTCTTTGGCAGAGCAGCAACTGCATGTTGTAT
GCCCCAGAAGCACTGTGGCCAGAAATTGGTTTGCGGCACTTGATCTGGGC
TATCTTGAACTTTCAACGACACCACGCCTATTTGGAAAAGAAGAAGAAGC
AGCTCTAGTATCCTTTGCCCCCTAGAACCATATACTATCTGAACAAC
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