CV885156

Overview
NameCV885156
Unique NameCV885156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885156_ssr327 microsatellite CV885156_ssr327:327..338. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig308 contig Csv1_Contig308:857..1657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885156 vs. ExPASy Swiss-Prot
Match: EI3EA_DANRE (Eukaryotic translation initiation factor 3 subunit E-A OS=Danio rerio GN=eif3ea PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 3.557e-51
Identity = 106/193 (54.92%), Postives = 139/193 (72.02%), Query Frame = -3
Query:  224 PHLLRYLATAFIVNK---RRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKLVGQLLEHAQTQAAR 793
            PH+LRYL TA I NK   +RR   KD +KVIQQE  +YKDPITEF+ C+YVN+DFD AQKK++ECE V++ND FL   +ED           F+ENARLFIFET+CRIHQ I + +LA+KLN+  EEA+RWIVNLIRN++LDAKID+K G V+M     + Y+Q+I+ TK LS R+ +++   +E  Q+ A R
Sbjct:  252 PHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDSAQKKLRECEAVLVNDFFLVACLED-----------FIENARLFIFETFCRIHQCISIGMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAISPYQQVIEKTKSLSFRS-QMLAMNIEKKQSNANR 432          
BLAST of CV885156 vs. ExPASy Swiss-Prot
Match: EI3EB_XENLA (Eukaryotic translation initiation factor 3 subunit E-B OS=Xenopus laevis GN=eif3e-B PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.924e-51
Identity = 104/193 (53.89%), Postives = 140/193 (72.54%), Query Frame = -3
Query:  224 PHLLRYLATAFIVNK---RRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKLVGQLLEHAQTQAAR 793
            PH+LRYL TA I NK   +RR   KD +KVIQQE  +YKDPITEF+ C+YV++DFDGAQKK++ECE V++ND FL   +ED           F+ENARLFIFET+CRIHQ I +++LA+KLN+  EEA+RWIVNLIRN++LDAKID+K G V+M     + Y+Q+I+ TK L+ R+ +++   +E    Q +R
Sbjct:  252 PHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVHFDFDGAQKKLRECESVLVNDFFLVACLED-----------FIENARLFIFETFCRIHQCISISMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLAFRS-QMLAMNIEKKSNQNSR 432          
BLAST of CV885156 vs. ExPASy Swiss-Prot
Match: EI3EB_DANRE (Eukaryotic translation initiation factor 3 subunit E-B OS=Danio rerio GN=eif3eb PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 1.035e-50
Identity = 102/179 (56.98%), Postives = 133/179 (74.30%), Query Frame = -3
Query:  266 PHLLRYLATAFIVNK---RRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKL 793
            PH+LRYL+TA I NK   +RR   KD +KVIQQE  +YKDPITEF+ C+YVN+DFD AQ+K++ECE V++ND FL   +ED           F+ENARLFIFET+CRIHQ I +++LA+KLN+  EEA+RWIVNLIRN++LDAKID+K G V+M     + Y+Q+I+ TK LS R+  L
Sbjct:  252 PHILRYLSTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDSAQRKLRECESVLVNDFFLVACLED-----------FIENARLFIFETFCRIHQCISISMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQML 419          
BLAST of CV885156 vs. ExPASy Swiss-Prot
Match: EIF3E_CHICK (Eukaryotic translation initiation factor 3 subunit E OS=Gallus gallus GN=EIF3E PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.765e-50
Identity = 103/193 (53.37%), Postives = 139/193 (72.02%), Query Frame = -3
Query:  224 PHLLRYLATAFIVNK---RRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKLVGQLLEHAQTQAAR 793
            PH+LRYL TA I NK   +RR   KD +KVIQQE  +Y+DPITEF+ C+YVN+DFDGAQKK++ECE V++ND FL   +ED           F+ENARLFIFET+CRIHQ I + +LA+KLN+  EEA+RWIVNLIRN++LDAK+D++ G V+M     + Y+Q+I+ TK LS R+ +++   +E    Q+ R
Sbjct:  251 PHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYRDPITEFVECLYVNFDFDGAQKKLRECETVLVNDFFLVACLED-----------FIENARLFIFETFCRIHQCISIGMLADKLNMTPEEAERWIVNLIRNARLDAKLDSELGHVVMGNNAVSPYQQVIEKTKSLSFRS-QMLAMNIEKKLNQSGR 431          
BLAST of CV885156 vs. ExPASy Swiss-Prot
Match: EIF3E_CULQU (Eukaryotic translation initiation factor 3 subunit E OS=Culex quinquefasciatus GN=eIF3-S6 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.827e-47
Identity = 95/176 (53.98%), Postives = 126/176 (71.59%), Query Frame = -3
Query:  266 PHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKL 793
            PH+LRYLATA I+N+ RR   KD IK+IQQE  +YKDPITEFL C+YVN+DF+GA+ K+ EC+ VI+ND F+           +    EF+ENARL IFET+CRIHQ I + +LA+KLN+  +EA+ WIVNLIRN++LDAKID+K G V+M     + Y+QL++    LS R+  L
Sbjct:  248 PHILRYLATAVIINRGRRNALKDLIKIIQQESYTYKDPITEFLECLYVNFDFEGARMKLHECQTVIINDFFI-----------IGCLQEFIENARLMIFETFCRIHQCITIGMLADKLNMEPDEAECWIVNLIRNARLDAKIDSKLGHVVMGTQPLSPYQQLVEKIDSLSVRSEAL 412          
BLAST of CV885156 vs. ExPASy Swiss-Prot
Match: EIF3E_DROYA (Eukaryotic translation initiation factor 3 subunit E OS=Drosophila yakuba GN=eIF3-S6 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.315e-47
Identity = 97/187 (51.87%), Postives = 132/187 (70.59%), Query Frame = -3
Query:  233 PHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKLVGQLLEHAQTQ 793
            PH++RYLATA ++N+ RR   KD IKVIQQE  +Y+DPITEFL C+YVN+DF+GA+ K+ EC+ VILND F+           V   +EF+E+ARL IFET+CRIHQ I +++LA+KLN+   EA+ WIVNLIRN++L+AKID+K G V+M     + Y+QL++    LS R+  L G L+E    Q
Sbjct:  248 PHIMRYLATAVVINRTRRNALKDLIKVIQQESYTYRDPITEFLECLYVNFDFEGARLKLHECQTVILNDFFI-----------VACLNEFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAECWIVNLIRNARLNAKIDSKLGHVVMGTQPLSPYQQLVEKIDSLSMRSEHLAG-LIERKSKQ 422          
BLAST of CV885156 vs. ExPASy Swiss-Prot
Match: EIF3E_DROVI (Eukaryotic translation initiation factor 3 subunit E OS=Drosophila virilis GN=eIF3-S6 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.315e-47
Identity = 97/187 (51.87%), Postives = 132/187 (70.59%), Query Frame = -3
Query:  233 PHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKLVGQLLEHAQTQ 793
            PH++RYLATA ++N+ RR   KD IKVIQQE  +Y+DPITEFL C+YVN+DF+GA+ K+ EC+ VILND F+           V   +EF+E+ARL IFET+CRIHQ I +++LA+KLN+   EA+ WIVNLIRN++L+AKID+K G V+M     + Y+QL++    LS R+  L G L+E    Q
Sbjct:  248 PHIMRYLATAVVINRTRRNALKDLIKVIQQESYTYRDPITEFLECLYVNFDFEGARLKLHECQTVILNDFFI-----------VACLNEFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAECWIVNLIRNARLNAKIDSKLGHVVMGTQPLSPYQQLVEKIDSLSMRSEHLAG-LIERKSKQ 422          
BLAST of CV885156 vs. ExPASy Swiss-Prot
Match: EIF3E_DROSI (Eukaryotic translation initiation factor 3 subunit E OS=Drosophila simulans GN=eIF3-S6 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.315e-47
Identity = 97/187 (51.87%), Postives = 132/187 (70.59%), Query Frame = -3
Query:  233 PHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKLVGQLLEHAQTQ 793
            PH++RYLATA ++N+ RR   KD IKVIQQE  +Y+DPITEFL C+YVN+DF+GA+ K+ EC+ VILND F+           V   +EF+E+ARL IFET+CRIHQ I +++LA+KLN+   EA+ WIVNLIRN++L+AKID+K G V+M     + Y+QL++    LS R+  L G L+E    Q
Sbjct:  248 PHIMRYLATAVVINRTRRNALKDLIKVIQQESYTYRDPITEFLECLYVNFDFEGARLKLHECQTVILNDFFI-----------VACLNEFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAECWIVNLIRNARLNAKIDSKLGHVVMGTQPLSPYQQLVEKIDSLSMRSEHLAG-LIERKSKQ 422          
BLAST of CV885156 vs. ExPASy Swiss-Prot
Match: EIF3E_DROSE (Eukaryotic translation initiation factor 3 subunit E OS=Drosophila sechellia GN=eIF3-S6 PE=3 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 5.315e-47
Identity = 97/187 (51.87%), Postives = 132/187 (70.59%), Query Frame = -3
Query:  233 PHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKLVGQLLEHAQTQ 793
            PH++RYLATA ++N+ RR   KD IKVIQQE  +Y+DPITEFL C+YVN+DF+GA+ K+ EC+ VILND F+           V   +EF+E+ARL IFET+CRIHQ I +++LA+KLN+   EA+ WIVNLIRN++L+AKID+K G V+M     + Y+QL++    LS R+  L G L+E    Q
Sbjct:  247 PHIMRYLATAVVINRTRRNALKDLIKVIQQESYTYRDPITEFLECLYVNFDFEGARLKLHECQTVILNDFFI-----------VACLNEFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAECWIVNLIRNARLNAKIDSKLGHVVMGTQPLSPYQQLVEKIDSLSMRSEHLAG-LIERKSKQ 421          
BLAST of CV885156 vs. ExPASy Swiss-Prot
Match: EIF3E_DROPS (Eukaryotic translation initiation factor 3 subunit E OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S6 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.315e-47
Identity = 97/187 (51.87%), Postives = 132/187 (70.59%), Query Frame = -3
Query:  233 PHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKLVGQLLEHAQTQ 793
            PH++RYLATA ++N+ RR   KD IKVIQQE  +Y+DPITEFL C+YVN+DF+GA+ K+ EC+ VILND F+           V   +EF+E+ARL IFET+CRIHQ I +++LA+KLN+   EA+ WIVNLIRN++L+AKID+K G V+M     + Y+QL++    LS R+  L G L+E    Q
Sbjct:  248 PHIMRYLATAVVINRTRRNALKDLIKVIQQESYTYRDPITEFLECLYVNFDFEGARLKLHECQTVILNDFFI-----------VACLNEFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAECWIVNLIRNARLNAKIDSKLGHVVMGTQPLSPYQQLVEKIDSLSMRSEHLAG-LIERKSKQ 422          
The following BLAST results are available for this feature:
BLAST of CV885156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
EI3EA_DANRE3.557e-5154.92Eukaryotic translation initiation factor 3 subunit... [more]
EI3EB_XENLA7.924e-5153.89Eukaryotic translation initiation factor 3 subunit... [more]
EI3EB_DANRE1.035e-5056.98Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_CHICK1.765e-5053.37Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_CULQU1.827e-4753.98Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_DROYA5.315e-4751.87Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_DROVI5.315e-4751.87Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_DROSI5.315e-4751.87Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_DROSE5.315e-4751.87Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_DROPS5.315e-4751.87Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885156 ID=CV885156; Name=CV885156; organism=Citrus sinensis; type=EST; length=798bp
TTTTACAATTTCCAAGAATGACCTCTTTCGAAAGATACATGTTAATCTTT
GAATAATTAAACAAAGTTACAGCAAACACCGAGGACATAATCATAAACTC
TTCCAAAATTTGAAAGAAAAATGGAAATGAAATGATTTATCAATAGAATT
GCTCTCTTCTGAATCTAATTAAAGAAGCAATTTCCAGGGATGACAACTTG
CAACAAGTACTTCTGATAATTTATCGCGCAGCTTGTGTTTGTGCATGTTC
CAGAAGTTGACCGACTAATTTGTAAGTACGTCCTGAAAGTCCTTTGGTGT
GGTCAATCAATTGCTCATACACGTTGGGGTGGGTGGGTTCCATGATAACA
GTTCCCGACTTTGCATCAATCTTGGCATCAAGTTTTGAGTTCCGAATAAG
ATTCACAATCCATCTTTGAGCTTCCTCATAATTTAGATTCAACTTCTCAG
CAAGCACTGCCATATCAATGCGTTGATGAATTCGACAATAGGTCTCAAAG
ATGAATAGCCGAGCATTTTCGAGGAACTCATCTCTCAAAGGAACAGTAGC
AAAGTTGCTATCTTCAACTCGTTTGCCAAGGAAAGGATCATTCAATATCA
CTTCTTCACACTCCTTCATCTTCTTCTGTGCCCCATCAAAGTCATAATTG
ACGTACACACATGCCAAAAACTCTGTAATGGGATCTTTGTACGAGTTTTG
CTCTTGCTGGATAACCTTAATAAAATCTTTGAATTGAGGTCTCCTCCTTT
TGTTGACAATGAATGCAGTAGCTAAATAGCGTAAAAGATGGGGAGCCT
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