CV885156

Overview
NameCV885156
Unique NameCV885156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885156_ssr327 microsatellite CV885156_ssr327:327..338. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig308 contig Csv1_Contig308:857..1657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885156 vs. ExPASy Swiss-Prot
Match: EIF3E_BOMMO (Eukaryotic translation initiation factor 3 subunit E OS=Bombyx mori GN=eIF3-S6 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.469e-44
Identity = 89/176 (50.57%), Postives = 124/176 (70.45%), Query Frame = -3
Query:  266 PHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKL 793
            PH+LRYLATA I+N+ RR   KD +KVIQQE  +Y+DPITEF+  +YVN+DF+ A++K+ +C+ V+L D FL           +   +EF+ENARL IFET+CRIHQ I + +LAE LN+  +EA+ WIVNLIRN++LDAKID+K G V+M     + Y+QL++    L+ R+  L
Sbjct:  259 PHILRYLATAVIINRSRRNALKDLVKVIQQEAYTYRDPITEFIEHLYVNFDFEAARRKLNQCQAVLLTDFFL-----------IACLEEFVENARLMIFETFCRIHQVISIGMLAENLNMQPDEAECWIVNLIRNARLDAKIDSKLGHVVMGAQPLSPYQQLVERIDSLAVRSEAL 423          
BLAST of CV885156 vs. ExPASy Swiss-Prot
Match: EIF3E_CAEEL (Eukaryotic translation initiation factor 3 subunit E OS=Caenorhabditis elegans GN=eif-3.E PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.709e-41
Identity = 89/183 (48.63%), Postives = 129/183 (70.49%), Query Frame = -3
Query:  254 APHLLRYLATAFIVNK-RRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLD-AKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKLVGQL 796
            APHLLRYLA A + +K R++   KD +KVI  E++SYKDP+T+FL C+Y+ YDFD AQ+ +++CEEV+ ND FL          T  L D F E+ARL IFE +CRIHQ I + +LA +LN++ EEA+RWIV+LIR  +++ AKID+K G V+M     +++EQ++++TK L+ R  ++  QL
Sbjct:  250 APHLLRYLAVAVVTSKSRQKNSLKDLVKVIDIERHSYKDPVTDFLTCLYIKYDFDEAQEMLQKCEEVLSNDFFL----------TAVLGD-FRESARLLIFEMFCRIHQCITIEMLARRLNMSQEEAERWIVDLIRTYRIEGAKIDSKLGQVVMGVKSVSIHEQVMENTKRLTLRAQQIALQL 421          
BLAST of CV885156 vs. ExPASy Swiss-Prot
Match: EIF3E_CAEBR (Eukaryotic translation initiation factor 3 subunit E OS=Caenorhabditis briggsae GN=eif-3.E PE=3 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 9.709e-41
Identity = 89/183 (48.63%), Postives = 129/183 (70.49%), Query Frame = -3
Query:  254 APHLLRYLATAFIVNK-RRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLD-AKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKLVGQL 796
            APHLLRYLA A + +K R++   KD +KVI  E++SYKDP+T+FL C+Y+ YDFD AQ+ +++CEEV+ ND FL          T  L D F E+ARL IFE +CRIHQ I + +LA +LN++ EEA+RWIV+LIR  +++ AKID+K G V+M     +++EQ++++TK L+ R  ++  QL
Sbjct:  129 APHLLRYLAVAVVTSKSRQKNSLKDLVKVIDIERHSYKDPVTDFLTCLYIKYDFDEAQEMLQKCEEVLSNDFFL----------TAVLGD-FRESARLLIFEMFCRIHQCITIEMLARRLNMSQEEAERWIVDLIRTYRIEGAKIDSKLGQVVMGVKSVSIHEQVMENTKRLTLRAQQIALQL 300          
BLAST of CV885156 vs. ExPASy Swiss-Prot
Match: EIF3E_ASPFU (Eukaryotic translation initiation factor 3 subunit E OS=Aspergillus fumigatus GN=int6 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.087e-39
Identity = 87/184 (47.28%), Postives = 119/184 (64.67%), Query Frame = -3
Query:  266 PHLLRYLATAFIVNKRR--------RPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKL 793
            P +LRYLA A I N+ R        + Q KD I+V++QE   Y DPIT+F+  +YV++DF+ AQKK+ E EEV+ +D FL           V   D F+E AR  I E+YC+IHQRID+  L+ +L LN +E ++WIVNLIR++++DAKID K GTVIM     +VY+Q+I+ TKG   RT  L
Sbjct:  273 PWILRYLAAAVITNRNRAHKNSSVYQKQLKDLIRVVRQEGYEYNDPITDFIKALYVDFDFEEAQKKLGEAEEVLRSDFFL-----------VSTTDAFVEAARHLISESYCKIHQRIDIKDLSTRLGLNQDEGEKWIVNLIRDTRVDAKIDYKEGTVIMNHPPQSVYQQVIEKTKGAFFRTQVL 445          
BLAST of CV885156 vs. ExPASy Swiss-Prot
Match: EIF3E_ASPFC (Eukaryotic translation initiation factor 3 subunit E OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=int6 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.087e-39
Identity = 87/184 (47.28%), Postives = 119/184 (64.67%), Query Frame = -3
Query:  266 PHLLRYLATAFIVNKRR--------RPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKL 793
            P +LRYLA A I N+ R        + Q KD I+V++QE   Y DPIT+F+  +YV++DF+ AQKK+ E EEV+ +D FL           V   D F+E AR  I E+YC+IHQRID+  L+ +L LN +E ++WIVNLIR++++DAKID K GTVIM     +VY+Q+I+ TKG   RT  L
Sbjct:  273 PWILRYLAAAVITNRNRAHKNSSVYQKQLKDLIRVVRQEGYEYNDPITDFIKALYVDFDFEEAQKKLGEAEEVLRSDFFL-----------VSTTDAFVEAARHLISESYCKIHQRIDIKDLSTRLGLNQDEGEKWIVNLIRDTRVDAKIDYKEGTVIMNHPPQSVYQQVIEKTKGAFFRTQVL 445          
BLAST of CV885156 vs. ExPASy Swiss-Prot
Match: EIF3E_EMENI (Eukaryotic translation initiation factor 3 subunit E OS=Emericella nidulans GN=int6 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.550e-38
Identity = 87/184 (47.28%), Postives = 118/184 (64.13%), Query Frame = -3
Query:  266 PHLLRYLATAFIVNKRR--------RPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKL 793
            P +LRYLA A I N+ R        + Q KD I+V++QE   Y DPIT+F+  +YV++DF+ AQKK+ E EEV+  D FL           V   D F+E AR  I E+YC+IHQRID+  L+ +L LN +E ++WIVNLIR++++DAKID K GTVIM     +VY+Q+I+ TKG   RT  L
Sbjct:  271 PWILRYLAAAVITNRNRAHKNSSVYQKQLKDLIRVVRQEGYEYSDPITDFVKALYVDFDFEEAQKKLGEAEEVLRGDFFL-----------VSAADAFVEAARHLISESYCKIHQRIDIKDLSTRLGLNQDEGEKWIVNLIRDTRVDAKIDYKEGTVIMNHPPQSVYQQVIEKTKGAFFRTQVL 443          
BLAST of CV885156 vs. ExPASy Swiss-Prot
Match: EIF3E_NEOFI (Eukaryotic translation initiation factor 3 subunit E OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=int6 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.644e-38
Identity = 86/184 (46.74%), Postives = 119/184 (64.67%), Query Frame = -3
Query:  266 PHLLRYLATAFIVNKRR--------RPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKL 793
            P +LRYLA A I N+ R        + Q KD I+V++QE   Y DPIT+F+  +YV++DF+ AQKK+ E E+V+ +D FL           V   D F+E AR  I E+YC+IHQRID+  L+ +L LN +E ++WIVNLIR++++DAKID K GTVIM     +VY+Q+I+ TKG   RT  L
Sbjct:  273 PWILRYLAAAVITNRNRAHKSSSVYQKQLKDLIRVVRQEGYEYNDPITDFVKALYVDFDFEEAQKKLGEAEDVLRSDFFL-----------VSTTDAFVEAARHLISESYCKIHQRIDIKDLSTRLGLNQDEGEKWIVNLIRDTRVDAKIDYKEGTVIMNHPPQSVYQQVIEKTKGAFFRTQVL 445          
BLAST of CV885156 vs. ExPASy Swiss-Prot
Match: EIF3E_ASPNC (Eukaryotic translation initiation factor 3 subunit E OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=int6 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.644e-38
Identity = 86/184 (46.74%), Postives = 119/184 (64.67%), Query Frame = -3
Query:  266 PHLLRYLATAFIVNKRR--------RPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKL 793
            P +LRYLA A I N+ R        + Q KD I+V++QE   Y DPIT+F+  +YV++DF+ AQKK+ E E+V+ +D FL           V   D F+E AR  I E+YC+IHQRID+  L+ +L LN +E ++WIVNLIR++++DAKID K GTVIM     +VY+Q+I+ TKG   RT  L
Sbjct:  274 PWILRYLAAAVITNRNRAHKNSNVYQKQLKDLIRVVRQEGYEYSDPITDFVKALYVDFDFEEAQKKLGEAEDVLRSDFFL-----------VSAADAFVEAARHLISESYCKIHQRIDIKDLSTRLGLNQDEGEKWIVNLIRDTRVDAKIDYKEGTVIMNHPPQSVYQQVIEKTKGAFFRTQVL 446          
BLAST of CV885156 vs. ExPASy Swiss-Prot
Match: EIF3E_ASPTN (Eukaryotic translation initiation factor 3 subunit E OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=int6 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.453e-38
Identity = 85/184 (46.20%), Postives = 119/184 (64.67%), Query Frame = -3
Query:  266 PHLLRYLATAFIVNKRR--------RPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKL 793
            P +LRYLA A I N+ R        + Q KD I+V++QE   Y DPIT+F+  +Y+++DF+ AQKK+ E E+V+ +D FL           V   D F+E AR  I E+YC+IHQRID+  L+ +L LN +E ++WIVNLIR++++DAKID K GTVIM     +VY+Q+I+ TKG   RT  L
Sbjct:  273 PWILRYLAAAVITNRNRAHKNSSAYQKQLKDLIRVVRQEGYEYSDPITDFVKALYIDFDFEEAQKKLGEAEDVLRSDFFL-----------VSAADAFVEAARHLISESYCKIHQRIDIKDLSTRLGLNQDEGEKWIVNLIRDTRVDAKIDYKEGTVIMNHPPQSVYQQVIEKTKGAFFRTQVL 445          
BLAST of CV885156 vs. ExPASy Swiss-Prot
Match: EIF3E_ASPCL (Eukaryotic translation initiation factor 3 subunit E OS=Aspergillus clavatus GN=int6 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.453e-38
Identity = 85/184 (46.20%), Postives = 119/184 (64.67%), Query Frame = -3
Query:  266 PHLLRYLATAFIVNKRR--------RPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKL 793
            P +LRYLA A I N+ R        + Q KD I+V++QE   Y DPIT+F+  +Y+++DF+ AQKK+ E E+V+ +D FL           V   D F+E AR  I E+YC+IHQRID+  L+ +L LN +E ++WIVNLIR++++DAKID K GTVIM     +VY+Q+I+ TKG   RT  L
Sbjct:  272 PWILRYLAAAVITNRNRAHKSSGSYQKQLKDLIRVVRQEGYEYSDPITDFVKALYIDFDFEEAQKKLGEAEDVLRSDFFL-----------VSAADAFVEAARHLISESYCKIHQRIDIKDLSTRLGLNQDEGEKWIVNLIRDTRVDAKIDYKEGTVIMNHPPQSVYQQVIEKTKGAFFRTQVL 444          
The following BLAST results are available for this feature:
BLAST of CV885156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
EIF3E_BOMMO2.469e-4450.57Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_CAEEL9.709e-4148.63Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_CAEBR9.709e-4148.63Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_ASPFU9.087e-3947.28Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_ASPFC9.087e-3947.28Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_EMENI1.550e-3847.28Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_NEOFI2.644e-3846.74Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_ASPNC2.644e-3846.74Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_ASPTN3.453e-3846.20Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_ASPCL3.453e-3846.20Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885156 ID=CV885156; Name=CV885156; organism=Citrus sinensis; type=EST; length=798bp
TTTTACAATTTCCAAGAATGACCTCTTTCGAAAGATACATGTTAATCTTT
GAATAATTAAACAAAGTTACAGCAAACACCGAGGACATAATCATAAACTC
TTCCAAAATTTGAAAGAAAAATGGAAATGAAATGATTTATCAATAGAATT
GCTCTCTTCTGAATCTAATTAAAGAAGCAATTTCCAGGGATGACAACTTG
CAACAAGTACTTCTGATAATTTATCGCGCAGCTTGTGTTTGTGCATGTTC
CAGAAGTTGACCGACTAATTTGTAAGTACGTCCTGAAAGTCCTTTGGTGT
GGTCAATCAATTGCTCATACACGTTGGGGTGGGTGGGTTCCATGATAACA
GTTCCCGACTTTGCATCAATCTTGGCATCAAGTTTTGAGTTCCGAATAAG
ATTCACAATCCATCTTTGAGCTTCCTCATAATTTAGATTCAACTTCTCAG
CAAGCACTGCCATATCAATGCGTTGATGAATTCGACAATAGGTCTCAAAG
ATGAATAGCCGAGCATTTTCGAGGAACTCATCTCTCAAAGGAACAGTAGC
AAAGTTGCTATCTTCAACTCGTTTGCCAAGGAAAGGATCATTCAATATCA
CTTCTTCACACTCCTTCATCTTCTTCTGTGCCCCATCAAAGTCATAATTG
ACGTACACACATGCCAAAAACTCTGTAATGGGATCTTTGTACGAGTTTTG
CTCTTGCTGGATAACCTTAATAAAATCTTTGAATTGAGGTCTCCTCCTTT
TGTTGACAATGAATGCAGTAGCTAAATAGCGTAAAAGATGGGGAGCCT
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