CV885155

Overview
NameCV885155
Unique NameCV885155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885155_ssr458 microsatellite CV885155_ssr458:458..469. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig308 contig Csv1_Contig308:860..1661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885155 vs. ExPASy Swiss-Prot
Match: EIF3E_COCIM (Eukaryotic translation initiation factor 3 subunit E OS=Coccidioides immitis GN=INT6 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.890e-38
Identity = 82/184 (44.57%), Postives = 122/184 (66.30%), Query Frame = 3
Query:    3 PHLLRYLATAFIVNKRR--------RPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKL 530
            P +LRYL  A I N++R        + Q KD I++++QE+  Y+DPIT+F+  +Y+++DF+ AQKK+ E EEV+ +D FL           V   D F+E+AR  I E+YC+IHQRID+  L+ +L L+ +E ++WIVNLIR++++DAKID K GTV+M     +VY+Q+I+ TKG   RT  L
Sbjct:  268 PWILRYLTAAVITNRQRVHKNSSLYQKQLKDLIRIVRQEEYEYQDPITDFIKALYIDFDFEEAQKKLGEAEEVLRSDFFL-----------VAAADAFVESARHLISESYCKIHQRIDIKDLSTRLGLSQDEGEKWIVNLIRDTRVDAKIDYKEGTVLMNHPPQSVYQQVIEKTKGGFFRTQVL 440          
BLAST of CV885155 vs. ExPASy Swiss-Prot
Match: EIF3E_ASPOR (Eukaryotic translation initiation factor 3 subunit E OS=Aspergillus oryzae GN=int6 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.890e-38
Identity = 85/184 (46.20%), Postives = 119/184 (64.67%), Query Frame = 3
Query:    3 PHLLRYLATAFIVNKRR--------RPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKL 530
            P +LRYLA A I N+ R        + Q KD I+V++QE   Y DPIT+F+  +Y+++DF+ AQKK+ E E+V+ +D FL           V   D F+E AR  I E+YC+IHQRID+  L+ +L LN +E ++WIVNLIR++++DAKID K GTVIM     +VY+Q+I+ TKG   RT  L
Sbjct:  273 PWILRYLAAAVITNRGRAHKSSSLYQKQLKDLIRVVRQEGYEYSDPITDFVKALYIDFDFEEAQKKLGEAEDVLRSDFFL-----------VSAADAFVEAARHLISESYCKIHQRIDIKDLSTRLGLNQDEGEKWIVNLIRDTRVDAKIDYKEGTVIMNHPPQSVYQQVIEKTKGAFFRTQVL 445          
BLAST of CV885155 vs. ExPASy Swiss-Prot
Match: EIF3E_SCLS1 (Eukaryotic translation initiation factor 3 subunit E OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=int6 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.312e-37
Identity = 81/183 (44.26%), Postives = 118/183 (64.48%), Query Frame = 3
Query:    3 PHLLRYLATAFIVNKRR-------RPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKL 530
            P +LRYL  A I N+ R       + Q KD I++++QE   Y DP+T+F+  +Y+++DF+ AQKK+ E EEV+ +D FL           V   + F+E AR  I E+YC+IHQRID+  L+ +L LN +E ++WIVNLIR++++DAKID K GTV+M     +VY+Q+I+ TKG   RT  L
Sbjct:  274 PWILRYLTAAVITNRNRTRNTGQYQKQLKDIIRIVKQENYEYSDPVTDFIKALYLDFDFEEAQKKLSEAEEVLRSDFFL-----------VAASENFVEAARHLISESYCKIHQRIDIKDLSARLGLNQDEGEKWIVNLIRDTRVDAKIDYKEGTVVMNHPPSSVYQQVIERTKGGFFRTQVL 445          
BLAST of CV885155 vs. ExPASy Swiss-Prot
Match: EIF3E_PHANO (Eukaryotic translation initiation factor 3 subunit E OS=Phaeosphaeria nodorum GN=INT6 PE=3 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 1.312e-37
Identity = 80/183 (43.72%), Postives = 121/183 (66.12%), Query Frame = 3
Query:    3 PHLLRYLATAFIVNKRR-------RPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKL 530
            P +LRYLA A I N+ +       + Q KD I++++QE   Y DP+T+F+  +Y+++DF+ AQKK+ E EE++ ND FL           +   D+F++ AR  I E+YC+IHQRID+  L+ +L L+ +E ++WIVNLIR++++DAKID K+GTVIM     +VY+Q+I+ TKG   RT  L
Sbjct:  258 PWILRYLAAAVITNRNKGRNSNQYQKQLKDLIRIVRQEGYEYSDPVTDFIKALYIDFDFEEAQKKLSETEEILKNDFFL-----------LGAADQFVDAARHLISESYCKIHQRIDIKDLSTRLGLSQDEGEKWIVNLIRDTRVDAKIDYKAGTVIMNHPPQSVYQQVIERTKGGFFRTQVL 429          
BLAST of CV885155 vs. ExPASy Swiss-Prot
Match: EIF3E_BRUMA (Eukaryotic translation initiation factor 3 subunit E OS=Brugia malayi GN=Bm1_11985 PE=3 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.714e-37
Identity = 87/182 (47.80%), Postives = 123/182 (67.58%), Query Frame = 3
Query:    3 PHLLRYLATAFIVNK-RRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLD-AKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKLVGQL 542
            PHLLRYLA A + +K +++   KD IKVI  E+++Y+ P+T FL C+Y+ YDFD AQKK+   EEV+ ND FL   +ED           F E+ARL IFE +CRIHQ I + +LAE+LN+   EA+RWIV+LIR  ++D AKID+K G V+M     +V+EQ++++TK L+ R  ++  QL
Sbjct:  249 PHLLRYLAVAVVTSKTKQKNSLKDLIKVIDIERHNYEXPVTXFLTCLYIKYDFDEAQKKV---EEVLSNDFFLTACLED-----------FRESARLLIFEMFCRIHQCISIQMLAERLNMQQVEAERWIVDLIRTYRIDGAKIDSKLGQVVMGAKTTSVHEQVMENTKRLTFRAQQIALQL 416          
BLAST of CV885155 vs. ExPASy Swiss-Prot
Match: EIF3E_BOTFB (Eukaryotic translation initiation factor 3 subunit E OS=Botryotinia fuckeliana (strain B05.10) GN=int6 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.923e-37
Identity = 80/183 (43.72%), Postives = 118/183 (64.48%), Query Frame = 3
Query:    3 PHLLRYLATAFIVNKRR-------RPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKL 530
            P +LRYL  A I N+ R       + Q KD I++++QE   Y DP+T+F+  +Y+++DF+ AQKK+ E EEV+ +D FL           V   + F+E AR  I E+YC+IHQRID+  L+ +L LN ++ ++WIVNLIR++++DAKID K GTV+M     +VY+Q+I+ TKG   RT  L
Sbjct:  275 PWILRYLTAAVITNRNRTRNTGQYQKQLKDIIRIVKQENYEYSDPVTDFIKALYLDFDFEEAQKKLSEAEEVLRSDFFL-----------VAASENFVEAARHLISESYCKIHQRIDIKDLSARLGLNQDDGEKWIVNLIRDTRVDAKIDYKEGTVVMNHPPSSVYQQVIERTKGGFFRTQVL 446          
BLAST of CV885155 vs. ExPASy Swiss-Prot
Match: EIF3E_MAGGR (Eukaryotic translation initiation factor 3 subunit E OS=Magnaporthe grisea GN=INT6 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.095e-35
Identity = 75/183 (40.98%), Postives = 117/183 (63.93%), Query Frame = 3
Query:    3 PHLLRYLATAFIVNKRR-------RPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKL 530
            P +LRYLA   I  + R       + Q KD +++++QE   Y DP+T+F+  +Y+++DF+ AQ+++   EEV+  D FL           + + D F++ AR   FE+YC+IH RID+  L+E+L LN +E ++WIVNLIR+++LDAKID + GTV+M   + +VY+Q+I+ TKG   RT  L
Sbjct:  269 PWILRYLAVVVIAGRGRARNTGAYQKQLKDVVRIVKQEGYEYSDPVTDFVRALYIDFDFEEAQRQLPRAEEVLRTDFFL-----------MSIGDSFVDAARHLFFESYCKIHARIDLKRLSEQLGLNVDEGEKWIVNLIRDTRLDAKIDFQEGTVVMNHPNSSVYQQVIERTKGGFFRTQVL 440          
BLAST of CV885155 vs. ExPASy Swiss-Prot
Match: EIF3E_YARLI (Eukaryotic translation initiation factor 3 subunit E OS=Yarrowia lipolytica GN=INT6 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.025e-34
Identity = 71/185 (38.38%), Postives = 116/185 (62.70%), Query Frame = 3
Query:    3 PHLLRYLATAFIVNKRR------RPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKLVGQ 539
            P +LRYL  A I           + + KD ++V+ QE+  Y+DP+T F+  +Y++Y F+ AQ ++ +CE+V+  D FL               D FLE+AR  + + YCR+HQR+D+A L++ LNL+ E+ ++WI NLI++S++DAKID    TVI+     +VY+Q+I+ TKGL+ R+ +++ Q
Sbjct:  244 PWILRYLVVAVIAGGHPHTASVFQKRLKDLVRVVGQEEYEYQDPLTRFVKSLYIDYSFEDAQNQLADCEKVLKQDFFLADSA-----------DAFLESARKLMSQVYCRVHQRVDIAQLSQTLNLSQEQGEKWIANLIKDSRMDAKIDESDSTVILNHPSVSVYQQVIEKTKGLTFRSSQVLNQ 417          
BLAST of CV885155 vs. ExPASy Swiss-Prot
Match: EIF3E_CHAGB (Eukaryotic translation initiation factor 3 subunit E OS=Chaetomium globosum GN=INT6 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.025e-34
Identity = 77/187 (41.18%), Postives = 119/187 (63.64%), Query Frame = 3
Query:    3 PHLLRYLATAFIVNKRR-------RPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKLVGQL 542
            P +LRYLA A I N+ R       + Q KD +++++QE   Y+DPIT F+  + +++DF+ AQ+++   EEV+ +D FL           +   D+F+++AR  IFE+YC+IH RI +  L+ +L LN + A++WIVNLIR+++LDAKID K GTV+M     +VY+Q+I+ TKG   RT  L   +
Sbjct:  270 PWILRYLAVAVITNRGRAKNPGIHQKQMKDVVRIVKQEAYEYQDPITRFVHALAIDFDFEEAQRQLVLAEEVLRSDFFL-----------LAHADDFVDSARHLIFESYCKIHARISLKDLSARLGLNADAAEKWIVNLIRDTRLDAKIDYKEGTVVMNHPPSSVYQQVIEKTKGGFFRTQVLTAAI 445          
BLAST of CV885155 vs. ExPASy Swiss-Prot
Match: EIF3E_NEUCR (Eukaryotic translation initiation factor 3 subunit E OS=Neurospora crassa GN=int-6 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.160e-34
Identity = 76/183 (41.53%), Postives = 118/183 (64.48%), Query Frame = 3
Query:    3 PHLLRYLATAFIVNKRR-------RPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKL 530
            P +LRYL  A I N+ R       + Q KD +++++QE   Y+DPIT F+  + +++DF+ AQ+++   EEV+ +D FL           +   D+F+++AR  IFE+YC+IH RI +  L+ +L LN ++A++WIVNLIR+++LDAKID K GTV+M     +VY+Q+I+ TKG   RT  L
Sbjct:  266 PWILRYLTVAVITNRGRAKNAGVHQKQMKDVVRIVKQEAYEYQDPITRFVHALCIDFDFEEAQQQLVLAEEVLRSDFFL-----------LAHADDFVDSARHLIFESYCKIHARISLKDLSARLGLNNDDAEKWIVNLIRDTRLDAKIDYKEGTVVMNHPPSSVYQQVIERTKGGFFRTQVL 437          
The following BLAST results are available for this feature:
BLAST of CV885155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
EIF3E_COCIM5.890e-3844.57Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_ASPOR5.890e-3846.20Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_SCLS11.312e-3744.26Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_PHANO1.312e-3743.72Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_BRUMA1.714e-3747.80Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_BOTFB2.923e-3743.72Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_MAGGR2.095e-3540.98Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_YARLI3.025e-3438.38Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_CHAGB3.025e-3441.18Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_NEUCR5.160e-3441.53Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885155 ID=CV885155; Name=CV885155; organism=Citrus sinensis; type=EST; length=799bp
CTCCCCATCTTTTACGCTATTTAGCTACTGCATTCATTGTCAACAAAAGG
AGGAGACCTCAATTCAAAGATTTTATTAAGGTTATCCAGCAAGAGCAAAA
CTCGTACAAAGATCCCATTACAGAGTTTTTGGCATGTGTGTACGTCAATT
ATGACTTTGATGGGGCACAGAAGAAGATGAAGGAGTGTGAAGAAGTGATA
TTGAATGATCCTTTCCTTGGCAAACGAGTTGAAGATAGCAACTTTGCTAC
TGTTCCTTTGAGAGATGAGTTCCTCGAAAATGCTCGGCTATTCATCTTTG
AGACCTATTGTCGAATTCATCAACGCATTGATATGGCAGTGCTTGCTGAG
AAGTTGAATCTAAATTATGAGGAAGCTCAAAGATGGATTGTGAATCTTAT
TCGGAACTCAAAACTTGATGCCAAGATTGATGCAAAGTCGGGAACTGTTA
TCATGGAACCCACCCACCCCAACGTGTATGAGCAATTGATTGACCACACC
AAAGGACTTTCAGGACGTACTTACAAATTAGTCGGTCAACTTCTGGAACA
TGCACAAACACAAGCTGCGCGATAAATTATCAGAAGTACTTGTTGCAAGT
TGTCATCCCTGGAAATTGCTTCTTTAATTAGATTCAGAAGAGAGCAATTC
TATTGATAAATCATTTCATTTCCATTTTTCTTTCAAATTTTGGAAGAGTT
TATGATTATGTCCTCGGTGTTTGCTGTAACTTTGTTTAATTATTCAAAGA
TTAACATGTATCTTTCTGAAAGAGGTCATTCTTGTGAAATTTGTTTGAA
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